Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16725 and CSW01_16730 are separated by 68 nucleotides CSW01_16730 and CSW01_16735 are separated by 185 nucleotides CSW01_16735 and CSW01_16740 overlap by 7 nucleotides CSW01_16740 and CSW01_16745 overlap by 35 nucleotides CSW01_16745 and CSW01_16750 are separated by 219 nucleotides
CSW01_16725: CSW01_16725 - DUF3800 domain-containing protein, at 427,410 to 428,282
_16725
CSW01_16730: CSW01_16730 - glutathione S-transferase, at 428,351 to 429,031
_16730
CSW01_16735: CSW01_16735 - DUF4160 domain-containing protein, at 429,217 to 429,492
_16735
CSW01_16740: CSW01_16740 - DUF2442 domain-containing protein, at 429,486 to 430,007
_16740
CSW01_16745: CSW01_16745 - hypothetical protein, at 429,973 to 430,086
_16745
CSW01_16750: CSW01_16750 - DUF645 domain-containing protein, at 430,306 to 430,431
_16750
Position (kb) 429
430 Strain fitness (log2 ratio) -2
-1
0
1
2 at 428.353 kb on + strand at 428.458 kb on + strand, within CSW01_16730 at 428.467 kb on - strand, within CSW01_16730 at 428.664 kb on + strand, within CSW01_16730 at 428.684 kb on - strand, within CSW01_16730 at 428.711 kb on + strand, within CSW01_16730 at 428.744 kb on + strand, within CSW01_16730 at 428.752 kb on - strand, within CSW01_16730 at 428.759 kb on - strand, within CSW01_16730 at 429.285 kb on + strand, within CSW01_16735 at 429.293 kb on - strand, within CSW01_16735 at 429.349 kb on + strand, within CSW01_16735 at 430.022 kb on - strand, within CSW01_16745
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 428,353 + +0.3 428,458 + CSW01_16730 0.16 +0.9 428,467 - CSW01_16730 0.17 -0.3 428,664 + CSW01_16730 0.46 +1.1 428,684 - CSW01_16730 0.49 -2.0 428,711 + CSW01_16730 0.53 -0.7 428,744 + CSW01_16730 0.58 -0.7 428,752 - CSW01_16730 0.59 -1.6 428,759 - CSW01_16730 0.60 -0.1 429,285 + CSW01_16735 0.25 +1.5 429,293 - CSW01_16735 0.28 -0.7 429,349 + CSW01_16735 0.48 +0.5 430,022 - CSW01_16745 0.43 +2.2
Or see this region's nucleotide sequence