Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_16385 and CSW01_16390 are separated by 136 nucleotides CSW01_16390 and CSW01_16395 are separated by 135 nucleotides CSW01_16395 and CSW01_16400 overlap by 11 nucleotides CSW01_16400 and CSW01_16405 are separated by 264 nucleotides CSW01_16405 and CSW01_16410 are separated by 75 nucleotides
CSW01_16385: CSW01_16385 - N-acetyltransferase, at 396,213 to 396,689
_16385
CSW01_16390: CSW01_16390 - lipocalin, at 396,826 to 397,341
_16390
CSW01_16395: CSW01_16395 - type II toxin-antitoxin system RelE/ParE family toxin, at 397,477 to 397,767
_16395
CSW01_16400: CSW01_16400 - type II toxin-antitoxin system Phd/YefM family antitoxin, at 397,757 to 398,005
_16400
CSW01_16405: CSW01_16405 - hemagglutinin, at 398,270 to 398,461
_16405
CSW01_16410: CSW01_16410 - site-specific DNA-methyltransferase, at 398,537 to 399,229
_16410
Position (kb) 397
398 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 396.604 kb on + strand, within CSW01_16385 at 396.661 kb on - strand at 396.704 kb on - strand at 397.512 kb on - strand, within CSW01_16395 at 397.628 kb on + strand, within CSW01_16395 at 398.080 kb on - strand at 398.311 kb on + strand, within CSW01_16405 at 398.326 kb on - strand, within CSW01_16405 at 398.336 kb on - strand, within CSW01_16405 at 398.336 kb on - strand, within CSW01_16405 at 398.390 kb on + strand, within CSW01_16405 at 398.499 kb on + strand at 398.507 kb on - strand at 398.611 kb on + strand, within CSW01_16410 at 398.634 kb on + strand, within CSW01_16410 at 398.642 kb on - strand, within CSW01_16410 at 398.644 kb on + strand, within CSW01_16410 at 398.644 kb on + strand, within CSW01_16410 at 398.644 kb on - strand, within CSW01_16410 at 398.649 kb on + strand, within CSW01_16410 at 398.652 kb on - strand, within CSW01_16410 at 398.652 kb on - strand, within CSW01_16410 at 398.657 kb on - strand, within CSW01_16410 at 398.657 kb on - strand, within CSW01_16410 at 398.668 kb on - strand, within CSW01_16410 at 398.706 kb on + strand, within CSW01_16410 at 398.763 kb on + strand, within CSW01_16410
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 396,604 + CSW01_16385 0.82 +0.2 396,661 - +0.2 396,704 - -3.3 397,512 - CSW01_16395 0.12 -0.7 397,628 + CSW01_16395 0.52 -2.8 398,080 - +0.1 398,311 + CSW01_16405 0.21 -0.6 398,326 - CSW01_16405 0.29 -0.1 398,336 - CSW01_16405 0.34 -0.2 398,336 - CSW01_16405 0.34 -2.1 398,390 + CSW01_16405 0.62 -0.3 398,499 + -0.2 398,507 - +1.6 398,611 + CSW01_16410 0.11 +0.2 398,634 + CSW01_16410 0.14 -2.9 398,642 - CSW01_16410 0.15 +5.2 398,644 + CSW01_16410 0.15 -0.7 398,644 + CSW01_16410 0.15 +0.1 398,644 - CSW01_16410 0.15 +1.0 398,649 + CSW01_16410 0.16 +0.8 398,652 - CSW01_16410 0.17 -2.5 398,652 - CSW01_16410 0.17 -0.7 398,657 - CSW01_16410 0.17 +0.5 398,657 - CSW01_16410 0.17 -2.1 398,668 - CSW01_16410 0.19 +1.1 398,706 + CSW01_16410 0.24 -0.8 398,763 + CSW01_16410 0.33 +1.6
Or see this region's nucleotide sequence