Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_15495 and CSW01_15500 are separated by 353 nucleotides CSW01_15500 and CSW01_15505 are separated by 194 nucleotides CSW01_15505 and CSW01_15510 are separated by 161 nucleotides
CSW01_15495: CSW01_15495 - DUF645 domain-containing protein, at 316,390 to 316,572
_15495
CSW01_15500: CSW01_15500 - DUF645 domain-containing protein, at 316,926 to 317,108
_15500
CSW01_15505: CSW01_15505 - HNH endonuclease, at 317,303 to 317,980
_15505
CSW01_15510: CSW01_15510 - deoxyguanosinetriphosphate triphosphohydrolase, at 318,142 to 319,350
_15510
Position (kb) 317
318 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 316.315 kb on + strand at 316.361 kb on + strand at 316.393 kb on - strand at 316.400 kb on - strand at 316.861 kb on + strand at 317.016 kb on - strand, within CSW01_15500 at 317.526 kb on + strand, within CSW01_15505 at 317.526 kb on + strand, within CSW01_15505 at 317.534 kb on - strand, within CSW01_15505 at 317.588 kb on - strand, within CSW01_15505 at 317.588 kb on - strand, within CSW01_15505 at 317.671 kb on - strand, within CSW01_15505 at 317.690 kb on + strand, within CSW01_15505 at 317.698 kb on - strand, within CSW01_15505 at 317.698 kb on - strand, within CSW01_15505 at 317.698 kb on - strand, within CSW01_15505 at 317.777 kb on + strand, within CSW01_15505 at 317.792 kb on + strand, within CSW01_15505 at 317.792 kb on + strand, within CSW01_15505 at 318.200 kb on - strand at 318.274 kb on + strand, within CSW01_15510 at 318.274 kb on + strand, within CSW01_15510 at 318.334 kb on - strand, within CSW01_15510 at 318.335 kb on + strand, within CSW01_15510 at 318.368 kb on + strand, within CSW01_15510 at 318.369 kb on + strand, within CSW01_15510 at 318.376 kb on - strand, within CSW01_15510 at 318.407 kb on + strand, within CSW01_15510 at 318.415 kb on - strand, within CSW01_15510 at 318.427 kb on + strand, within CSW01_15510 at 318.454 kb on - strand, within CSW01_15510 at 318.462 kb on - strand, within CSW01_15510 at 318.602 kb on + strand, within CSW01_15510 at 318.639 kb on - strand, within CSW01_15510 at 318.660 kb on - strand, within CSW01_15510 at 318.685 kb on + strand, within CSW01_15510 at 318.787 kb on + strand, within CSW01_15510 at 318.812 kb on + strand, within CSW01_15510 at 318.820 kb on - strand, within CSW01_15510 at 318.867 kb on + strand, within CSW01_15510 at 318.867 kb on + strand, within CSW01_15510 at 318.867 kb on + strand, within CSW01_15510 at 318.867 kb on + strand, within CSW01_15510 at 318.867 kb on + strand, within CSW01_15510 at 318.874 kb on + strand, within CSW01_15510 at 318.875 kb on - strand, within CSW01_15510 at 318.882 kb on - strand, within CSW01_15510 at 318.955 kb on - strand, within CSW01_15510 at 318.965 kb on - strand, within CSW01_15510
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 316,315 + -1.0 316,361 + +0.2 316,393 - +0.1 316,400 - -0.7 316,861 + +1.0 317,016 - CSW01_15500 0.49 +0.9 317,526 + CSW01_15505 0.33 +1.7 317,526 + CSW01_15505 0.33 -2.4 317,534 - CSW01_15505 0.34 -0.6 317,588 - CSW01_15505 0.42 -0.1 317,588 - CSW01_15505 0.42 -1.4 317,671 - CSW01_15505 0.54 +0.1 317,690 + CSW01_15505 0.57 -0.3 317,698 - CSW01_15505 0.58 +0.5 317,698 - CSW01_15505 0.58 +0.5 317,698 - CSW01_15505 0.58 -0.7 317,777 + CSW01_15505 0.70 -4.2 317,792 + CSW01_15505 0.72 +1.7 317,792 + CSW01_15505 0.72 +0.5 318,200 - -1.2 318,274 + CSW01_15510 0.11 -0.2 318,274 + CSW01_15510 0.11 +0.3 318,334 - CSW01_15510 0.16 +0.4 318,335 + CSW01_15510 0.16 -0.3 318,368 + CSW01_15510 0.19 +0.7 318,369 + CSW01_15510 0.19 +0.9 318,376 - CSW01_15510 0.19 -0.2 318,407 + CSW01_15510 0.22 +0.5 318,415 - CSW01_15510 0.23 -3.2 318,427 + CSW01_15510 0.24 -1.1 318,454 - CSW01_15510 0.26 +2.1 318,462 - CSW01_15510 0.26 +0.9 318,602 + CSW01_15510 0.38 -1.8 318,639 - CSW01_15510 0.41 -0.4 318,660 - CSW01_15510 0.43 -1.6 318,685 + CSW01_15510 0.45 +0.1 318,787 + CSW01_15510 0.53 -0.4 318,812 + CSW01_15510 0.55 -0.4 318,820 - CSW01_15510 0.56 -1.3 318,867 + CSW01_15510 0.60 +0.7 318,867 + CSW01_15510 0.60 +1.2 318,867 + CSW01_15510 0.60 -1.5 318,867 + CSW01_15510 0.60 -0.4 318,867 + CSW01_15510 0.60 -2.1 318,874 + CSW01_15510 0.61 -1.0 318,875 - CSW01_15510 0.61 +0.9 318,882 - CSW01_15510 0.61 +0.1 318,955 - CSW01_15510 0.67 +2.9 318,965 - CSW01_15510 0.68 -0.5
Or see this region's nucleotide sequence