Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15305

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15300 and CSW01_15305 are separated by 177 nucleotidesCSW01_15305 and CSW01_15310 are separated by 94 nucleotidesCSW01_15310 and CSW01_15315 are separated by 216 nucleotides CSW01_15300: CSW01_15300 - D-alanyl-D-alanine carboxypeptidase, at 288,376 to 289,545 _15300 CSW01_15305: CSW01_15305 - XRE family transcriptional regulator, at 289,723 to 290,070 _15305 CSW01_15310: CSW01_15310 - exoribonuclease R, at 290,165 to 290,599 _15310 CSW01_15315: CSW01_15315 - carbonic anhydrase, at 290,816 to 291,535 _15315 Position (kb) 289 290 291Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 288.867 kb on + strand, within CSW01_15300at 288.868 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.898 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.900 kb on + strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.906 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.908 kb on - strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.910 kb on + strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.918 kb on - strand, within CSW01_15300at 288.925 kb on + strand, within CSW01_15300at 288.989 kb on - strand, within CSW01_15300at 289.024 kb on - strand, within CSW01_15300at 289.032 kb on - strand, within CSW01_15300at 289.069 kb on + strand, within CSW01_15300at 289.074 kb on + strand, within CSW01_15300at 289.077 kb on - strand, within CSW01_15300at 289.082 kb on - strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.087 kb on + strand, within CSW01_15300at 289.088 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.093 kb on + strand, within CSW01_15300at 289.133 kb on + strand, within CSW01_15300at 289.166 kb on + strand, within CSW01_15300at 289.194 kb on + strand, within CSW01_15300at 289.196 kb on + strand, within CSW01_15300at 289.291 kb on + strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.299 kb on - strand, within CSW01_15300at 289.301 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.316 kb on + strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.324 kb on - strand, within CSW01_15300at 289.401 kb on - strand, within CSW01_15300at 289.493 kb on + strandat 289.509 kb on - strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.514 kb on + strandat 289.515 kb on + strandat 289.522 kb on - strandat 289.532 kb on - strandat 289.627 kb on + strandat 289.633 kb on - strandat 289.633 kb on - strandat 289.656 kb on - strandat 289.684 kb on + strandat 289.743 kb on + strandat 289.743 kb on + strandat 289.745 kb on + strandat 289.751 kb on - strandat 289.872 kb on + strand, within CSW01_15305at 289.892 kb on + strand, within CSW01_15305at 289.913 kb on - strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.960 kb on + strand, within CSW01_15305at 289.968 kb on - strand, within CSW01_15305at 289.968 kb on - strand, within CSW01_15305at 290.086 kb on - strandat 290.342 kb on - strand, within CSW01_15310at 290.342 kb on - strand, within CSW01_15310at 290.601 kb on + strandat 290.601 kb on + strandat 290.601 kb on + strandat 290.609 kb on - strandat 290.762 kb on - strandat 290.778 kb on - strandat 290.865 kb on + strandat 290.887 kb on + strandat 290.887 kb on + strandat 290.932 kb on + strand, within CSW01_15315at 290.979 kb on + strand, within CSW01_15315at 290.992 kb on + strand, within CSW01_15315at 291.037 kb on + strand, within CSW01_15315at 291.045 kb on - strand, within CSW01_15315at 291.045 kb on - strand, within CSW01_15315at 291.063 kb on + strand, within CSW01_15315

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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288,867 + CSW01_15300 0.42 +1.6
288,868 + CSW01_15300 0.42 +0.9
288,898 + CSW01_15300 0.45 +0.9
288,898 + CSW01_15300 0.45 +1.4
288,900 + CSW01_15300 0.45 -1.9
288,900 + CSW01_15300 0.45 +1.5
288,900 + CSW01_15300 0.45 -1.2
288,900 + CSW01_15300 0.45 +2.2
288,900 + CSW01_15300 0.45 -0.2
288,900 + CSW01_15300 0.45 +0.9
288,900 + CSW01_15300 0.45 -2.3
288,900 + CSW01_15300 0.45 -2.3
288,906 - CSW01_15300 0.45 +0.8
288,906 - CSW01_15300 0.45 -1.3
288,908 - CSW01_15300 0.45 +0.1
288,908 - CSW01_15300 0.45 +0.5
288,908 - CSW01_15300 0.45 -0.2
288,908 - CSW01_15300 0.45 -0.2
288,908 - CSW01_15300 0.45 +0.9
288,908 - CSW01_15300 0.45 +0.9
288,908 - CSW01_15300 0.45 -1.2
288,908 - CSW01_15300 0.45 +0.3
288,908 - CSW01_15300 0.45 -2.7
288,910 + CSW01_15300 0.46 -0.6
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +2.5
288,910 + CSW01_15300 0.46 -0.4
288,910 + CSW01_15300 0.46 +0.9
288,910 + CSW01_15300 0.46 -0.0
288,910 + CSW01_15300 0.46 +0.8
288,910 + CSW01_15300 0.46 -1.2
288,910 + CSW01_15300 0.46 -0.7
288,910 + CSW01_15300 0.46 +0.4
288,910 + CSW01_15300 0.46 +0.8
288,910 + CSW01_15300 0.46 +1.7
288,910 + CSW01_15300 0.46 -1.7
288,910 + CSW01_15300 0.46 +1.0
288,910 + CSW01_15300 0.46 +1.3
288,910 + CSW01_15300 0.46 +0.5
288,918 - CSW01_15300 0.46 -2.2
288,918 - CSW01_15300 0.46 +0.4
288,918 - CSW01_15300 0.46 +1.0
288,918 - CSW01_15300 0.46 +0.0
288,918 - CSW01_15300 0.46 +0.0
288,918 - CSW01_15300 0.46 +1.8
288,918 - CSW01_15300 0.46 +0.4
288,918 - CSW01_15300 0.46 -2.6
288,918 - CSW01_15300 0.46 +0.6
288,918 - CSW01_15300 0.46 +0.3
288,918 - CSW01_15300 0.46 -2.4
288,918 - CSW01_15300 0.46 -0.2
288,918 - CSW01_15300 0.46 -0.7
288,918 - CSW01_15300 0.46 -1.7
288,925 + CSW01_15300 0.47 -0.5
288,989 - CSW01_15300 0.52 -2.5
289,024 - CSW01_15300 0.55 +0.4
289,032 - CSW01_15300 0.56 -1.2
289,069 + CSW01_15300 0.59 -0.5
289,074 + CSW01_15300 0.60 +0.3
289,077 - CSW01_15300 0.60 -0.7
289,082 - CSW01_15300 0.60 +0.3
289,087 + CSW01_15300 0.61 -0.6
289,087 + CSW01_15300 0.61 -2.2
289,087 + CSW01_15300 0.61 -0.6
289,088 + CSW01_15300 0.61 -1.9
289,093 + CSW01_15300 0.61 +1.5
289,093 + CSW01_15300 0.61 -0.5
289,093 + CSW01_15300 0.61 -2.7
289,133 + CSW01_15300 0.65 -2.5
289,166 + CSW01_15300 0.68 -0.4
289,194 + CSW01_15300 0.70 -0.2
289,196 + CSW01_15300 0.70 +1.1
289,291 + CSW01_15300 0.78 -1.0
289,299 - CSW01_15300 0.79 -3.7
289,299 - CSW01_15300 0.79 -0.7
289,299 - CSW01_15300 0.79 +0.9
289,301 + CSW01_15300 0.79 +0.1
289,316 + CSW01_15300 0.80 -2.3
289,316 + CSW01_15300 0.80 +0.6
289,316 + CSW01_15300 0.80 -1.6
289,316 + CSW01_15300 0.80 +1.0
289,324 - CSW01_15300 0.81 -0.8
289,324 - CSW01_15300 0.81 +2.1
289,324 - CSW01_15300 0.81 -1.4
289,401 - CSW01_15300 0.88 -2.2
289,493 + -0.4
289,509 - -0.7
289,514 + +1.2
289,514 + -2.9
289,514 + -2.1
289,515 + +1.8
289,522 - +1.0
289,532 - +0.3
289,627 + -0.5
289,633 - +0.5
289,633 - +0.1
289,656 - -1.3
289,684 + +1.0
289,743 + -1.7
289,743 + -2.7
289,745 + -0.7
289,751 - -0.7
289,872 + CSW01_15305 0.43 -0.7
289,892 + CSW01_15305 0.49 +1.1
289,913 - CSW01_15305 0.55 +0.5
289,960 + CSW01_15305 0.68 -3.5
289,960 + CSW01_15305 0.68 -2.4
289,960 + CSW01_15305 0.68 -1.0
289,960 + CSW01_15305 0.68 -1.7
289,968 - CSW01_15305 0.70 -0.3
289,968 - CSW01_15305 0.70 +0.7
290,086 - +1.7
290,342 - CSW01_15310 0.41 -0.7
290,342 - CSW01_15310 0.41 +0.5
290,601 + +0.6
290,601 + -0.2
290,601 + +0.3
290,609 - -2.3
290,762 - -0.4
290,778 - +0.6
290,865 + +0.1
290,887 + +1.7
290,887 + -3.0
290,932 + CSW01_15315 0.16 +0.0
290,979 + CSW01_15315 0.23 +0.2
290,992 + CSW01_15315 0.24 -2.8
291,037 + CSW01_15315 0.31 +0.2
291,045 - CSW01_15315 0.32 -0.4
291,045 - CSW01_15315 0.32 +0.6
291,063 + CSW01_15315 0.34 +0.9

Or see this region's nucleotide sequence