Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15145

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15135 and CSW01_15140 are separated by 57 nucleotidesCSW01_15140 and CSW01_15145 are separated by 269 nucleotidesCSW01_15145 and CSW01_15150 are separated by 80 nucleotidesCSW01_15150 and CSW01_15155 are separated by 117 nucleotides CSW01_15135: CSW01_15135 - TonB-dependent siderophore receptor, at 253,609 to 255,588 _15135 CSW01_15140: CSW01_15140 - DUF2218 domain-containing protein, at 255,646 to 255,966 _15140 CSW01_15145: CSW01_15145 - acetate kinase, at 256,236 to 257,429 _15145 CSW01_15150: CSW01_15150 - hypothetical protein, at 257,510 to 257,806 _15150 CSW01_15155: CSW01_15155 - phosphoribosyl-AMP cyclohydrolase, at 257,924 to 258,493 _15155 Position (kb) 256 257 258Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 255.283 kb on + strand, within CSW01_15135at 255.343 kb on - strand, within CSW01_15135at 255.365 kb on - strand, within CSW01_15135at 255.365 kb on - strand, within CSW01_15135at 255.400 kb on - strandat 255.557 kb on + strandat 255.557 kb on + strandat 255.565 kb on - strandat 255.565 kb on - strandat 255.610 kb on - strandat 255.610 kb on - strandat 255.632 kb on - strandat 255.685 kb on + strand, within CSW01_15140at 255.693 kb on - strand, within CSW01_15140at 255.695 kb on - strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.806 kb on + strand, within CSW01_15140at 255.810 kb on + strand, within CSW01_15140at 255.814 kb on - strand, within CSW01_15140at 255.814 kb on - strand, within CSW01_15140at 256.006 kb on - strandat 256.006 kb on - strandat 256.205 kb on + strandat 256.213 kb on - strandat 256.223 kb on + strandat 256.246 kb on + strandat 256.324 kb on + strandat 256.325 kb on - strandat 256.325 kb on - strandat 256.332 kb on - strandat 256.332 kb on - strandat 256.352 kb on + strandat 256.446 kb on + strand, within CSW01_15145at 256.483 kb on + strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.484 kb on - strand, within CSW01_15145at 256.562 kb on - strand, within CSW01_15145at 256.676 kb on - strand, within CSW01_15145at 256.773 kb on + strand, within CSW01_15145at 256.875 kb on - strand, within CSW01_15145at 257.009 kb on - strand, within CSW01_15145at 257.079 kb on - strand, within CSW01_15145at 257.170 kb on + strand, within CSW01_15145at 257.178 kb on - strand, within CSW01_15145at 257.242 kb on - strand, within CSW01_15145at 257.266 kb on + strand, within CSW01_15145at 257.274 kb on - strand, within CSW01_15145at 257.352 kb on - strandat 257.354 kb on + strandat 257.362 kb on - strandat 257.362 kb on - strandat 257.474 kb on - strandat 257.510 kb on + strandat 257.518 kb on - strandat 257.524 kb on - strandat 257.534 kb on - strandat 257.534 kb on - strandat 257.534 kb on - strandat 257.571 kb on - strand, within CSW01_15150at 257.637 kb on + strand, within CSW01_15150at 257.637 kb on + strand, within CSW01_15150at 257.674 kb on + strand, within CSW01_15150at 257.785 kb on + strandat 257.840 kb on + strandat 257.840 kb on + strandat 257.954 kb on + strandat 257.962 kb on - strandat 257.962 kb on - strandat 258.010 kb on - strand, within CSW01_15155at 258.064 kb on + strand, within CSW01_15155at 258.171 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.221 kb on + strand, within CSW01_15155at 258.229 kb on - strand, within CSW01_15155at 258.231 kb on + strand, within CSW01_15155at 258.303 kb on + strand, within CSW01_15155at 258.398 kb on + strand, within CSW01_15155at 258.401 kb on + strand, within CSW01_15155

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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255,283 + CSW01_15135 0.85 -0.4
255,343 - CSW01_15135 0.88 +1.1
255,365 - CSW01_15135 0.89 +0.7
255,365 - CSW01_15135 0.89 +1.2
255,400 - -1.0
255,557 + -0.7
255,557 + +1.0
255,565 - +2.0
255,565 - +1.1
255,610 - -0.0
255,610 - -0.7
255,632 - +0.0
255,685 + CSW01_15140 0.12 -1.4
255,693 - CSW01_15140 0.15 +1.1
255,695 - CSW01_15140 0.15 +0.8
255,806 + CSW01_15140 0.50 +0.5
255,806 + CSW01_15140 0.50 -1.2
255,806 + CSW01_15140 0.50 -1.6
255,810 + CSW01_15140 0.51 -0.3
255,814 - CSW01_15140 0.52 -0.4
255,814 - CSW01_15140 0.52 -0.3
256,006 - -0.8
256,006 - -0.8
256,205 + -4.5
256,213 - -0.0
256,223 + -1.1
256,246 + +1.0
256,324 + -1.0
256,325 - -0.2
256,325 - -0.6
256,332 - -0.4
256,332 - +1.6
256,352 + -1.3
256,446 + CSW01_15145 0.18 -0.1
256,483 + CSW01_15145 0.21 +0.1
256,484 - CSW01_15145 0.21 -0.7
256,484 - CSW01_15145 0.21 -1.3
256,484 - CSW01_15145 0.21 -0.4
256,562 - CSW01_15145 0.27 +0.1
256,676 - CSW01_15145 0.37 -3.0
256,773 + CSW01_15145 0.45 -0.1
256,875 - CSW01_15145 0.54 -3.5
257,009 - CSW01_15145 0.65 -3.6
257,079 - CSW01_15145 0.71 +0.3
257,170 + CSW01_15145 0.78 +0.7
257,178 - CSW01_15145 0.79 +0.4
257,242 - CSW01_15145 0.84 +0.4
257,266 + CSW01_15145 0.86 -0.1
257,274 - CSW01_15145 0.87 +0.8
257,352 - -0.6
257,354 + +0.4
257,362 - -4.1
257,362 - -0.4
257,474 - -0.4
257,510 + -2.2
257,518 - +1.3
257,524 - -2.8
257,534 - -1.9
257,534 - -1.8
257,534 - -1.2
257,571 - CSW01_15150 0.21 -3.2
257,637 + CSW01_15150 0.43 +0.8
257,637 + CSW01_15150 0.43 -2.1
257,674 + CSW01_15150 0.55 -0.3
257,785 + +1.0
257,840 + +0.9
257,840 + +0.8
257,954 + -2.1
257,962 - +1.3
257,962 - +0.2
258,010 - CSW01_15155 0.15 -2.2
258,064 + CSW01_15155 0.25 +0.5
258,171 + CSW01_15155 0.43 +1.0
258,221 + CSW01_15155 0.52 -0.2
258,221 + CSW01_15155 0.52 +1.9
258,221 + CSW01_15155 0.52 +0.7
258,229 - CSW01_15155 0.54 -0.2
258,231 + CSW01_15155 0.54 +0.7
258,303 + CSW01_15155 0.66 +0.9
258,398 + CSW01_15155 0.83 +0.3
258,401 + CSW01_15155 0.84 -0.1

Or see this region's nucleotide sequence