Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_15080

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_15075 and CSW01_15080 are separated by 298 nucleotidesCSW01_15080 and CSW01_15085 are separated by 347 nucleotides CSW01_15075: CSW01_15075 - hemolysin, at 237,585 to 239,810 _15075 CSW01_15080: CSW01_15080 - methyl-accepting chemotaxis protein HlyB, at 240,109 to 241,755 _15080 CSW01_15085: CSW01_15085 - lipase, at 242,103 to 243,041 _15085 Position (kb) 240 241 242Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 239.177 kb on + strand, within CSW01_15075at 239.189 kb on + strand, within CSW01_15075at 239.194 kb on + strand, within CSW01_15075at 239.220 kb on + strand, within CSW01_15075at 239.228 kb on - strand, within CSW01_15075at 239.228 kb on - strand, within CSW01_15075at 239.228 kb on - strand, within CSW01_15075at 239.237 kb on + strand, within CSW01_15075at 239.241 kb on - strand, within CSW01_15075at 239.261 kb on + strand, within CSW01_15075at 239.268 kb on - strand, within CSW01_15075at 239.274 kb on + strand, within CSW01_15075at 239.280 kb on - strand, within CSW01_15075at 239.293 kb on + strand, within CSW01_15075at 239.298 kb on + strand, within CSW01_15075at 239.338 kb on + strand, within CSW01_15075at 239.402 kb on - strand, within CSW01_15075at 239.429 kb on + strand, within CSW01_15075at 239.466 kb on + strand, within CSW01_15075at 239.557 kb on + strand, within CSW01_15075at 239.677 kb on + strandat 239.750 kb on - strandat 239.838 kb on - strandat 240.021 kb on + strandat 240.021 kb on + strandat 240.029 kb on - strandat 240.187 kb on + strandat 240.204 kb on - strandat 240.228 kb on + strandat 240.295 kb on + strand, within CSW01_15080at 240.303 kb on - strand, within CSW01_15080at 240.441 kb on + strand, within CSW01_15080at 240.510 kb on + strand, within CSW01_15080at 240.515 kb on + strand, within CSW01_15080at 240.644 kb on + strand, within CSW01_15080at 240.652 kb on - strand, within CSW01_15080at 240.670 kb on + strand, within CSW01_15080at 240.685 kb on - strand, within CSW01_15080at 240.685 kb on - strand, within CSW01_15080at 240.743 kb on + strand, within CSW01_15080at 240.882 kb on - strand, within CSW01_15080at 240.959 kb on + strand, within CSW01_15080at 240.967 kb on - strand, within CSW01_15080at 241.014 kb on + strand, within CSW01_15080at 241.014 kb on + strand, within CSW01_15080at 241.022 kb on - strand, within CSW01_15080at 241.022 kb on - strand, within CSW01_15080at 241.022 kb on - strand, within CSW01_15080at 241.022 kb on - strand, within CSW01_15080at 241.022 kb on - strand, within CSW01_15080at 241.022 kb on - strand, within CSW01_15080at 241.027 kb on - strand, within CSW01_15080at 241.164 kb on - strand, within CSW01_15080at 241.169 kb on + strand, within CSW01_15080at 241.199 kb on - strand, within CSW01_15080at 241.294 kb on + strand, within CSW01_15080at 241.393 kb on - strand, within CSW01_15080at 241.436 kb on - strand, within CSW01_15080at 241.438 kb on + strand, within CSW01_15080at 241.438 kb on + strand, within CSW01_15080at 241.453 kb on + strand, within CSW01_15080at 241.484 kb on + strand, within CSW01_15080at 241.617 kb on + strandat 241.678 kb on + strandat 241.684 kb on + strandat 241.686 kb on - strandat 241.687 kb on - strandat 241.879 kb on - strandat 242.102 kb on - strandat 242.146 kb on - strandat 242.153 kb on - strandat 242.184 kb on + strandat 242.190 kb on + strandat 242.192 kb on - strandat 242.197 kb on - strand, within CSW01_15085at 242.205 kb on - strand, within CSW01_15085at 242.211 kb on - strand, within CSW01_15085at 242.217 kb on + strand, within CSW01_15085at 242.237 kb on - strand, within CSW01_15085at 242.302 kb on + strand, within CSW01_15085at 242.314 kb on + strand, within CSW01_15085at 242.324 kb on + strand, within CSW01_15085at 242.324 kb on + strand, within CSW01_15085at 242.344 kb on - strand, within CSW01_15085at 242.348 kb on + strand, within CSW01_15085at 242.363 kb on + strand, within CSW01_15085at 242.525 kb on - strand, within CSW01_15085at 242.526 kb on - strand, within CSW01_15085at 242.540 kb on - strand, within CSW01_15085at 242.594 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.600 kb on - strand, within CSW01_15085at 242.678 kb on - strand, within CSW01_15085at 242.705 kb on + strand, within CSW01_15085at 242.705 kb on + strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.713 kb on - strand, within CSW01_15085at 242.740 kb on + strand, within CSW01_15085

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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239,177 + CSW01_15075 0.72 +0.0
239,189 + CSW01_15075 0.72 -1.7
239,194 + CSW01_15075 0.72 -2.1
239,220 + CSW01_15075 0.73 +0.3
239,228 - CSW01_15075 0.74 -0.5
239,228 - CSW01_15075 0.74 -1.9
239,228 - CSW01_15075 0.74 -0.5
239,237 + CSW01_15075 0.74 -1.5
239,241 - CSW01_15075 0.74 -2.4
239,261 + CSW01_15075 0.75 +0.1
239,268 - CSW01_15075 0.76 -2.7
239,274 + CSW01_15075 0.76 -2.0
239,280 - CSW01_15075 0.76 +1.9
239,293 + CSW01_15075 0.77 +0.3
239,298 + CSW01_15075 0.77 -2.0
239,338 + CSW01_15075 0.79 +2.0
239,402 - CSW01_15075 0.82 -2.1
239,429 + CSW01_15075 0.83 -1.2
239,466 + CSW01_15075 0.85 +2.0
239,557 + CSW01_15075 0.89 +0.6
239,677 + +1.1
239,750 - -0.3
239,838 - -1.2
240,021 + -0.3
240,021 + -2.1
240,029 - +0.4
240,187 + -1.9
240,204 - -1.5
240,228 + +1.2
240,295 + CSW01_15080 0.11 -3.2
240,303 - CSW01_15080 0.12 -0.6
240,441 + CSW01_15080 0.20 +0.4
240,510 + CSW01_15080 0.24 +1.3
240,515 + CSW01_15080 0.25 +0.2
240,644 + CSW01_15080 0.32 -0.3
240,652 - CSW01_15080 0.33 +0.3
240,670 + CSW01_15080 0.34 +1.1
240,685 - CSW01_15080 0.35 -0.8
240,685 - CSW01_15080 0.35 -0.0
240,743 + CSW01_15080 0.38 +2.2
240,882 - CSW01_15080 0.47 -0.0
240,959 + CSW01_15080 0.52 -2.7
240,967 - CSW01_15080 0.52 +0.6
241,014 + CSW01_15080 0.55 -2.2
241,014 + CSW01_15080 0.55 +0.4
241,022 - CSW01_15080 0.55 +1.1
241,022 - CSW01_15080 0.55 -1.9
241,022 - CSW01_15080 0.55 +1.9
241,022 - CSW01_15080 0.55 -2.6
241,022 - CSW01_15080 0.55 +1.8
241,022 - CSW01_15080 0.55 +1.8
241,027 - CSW01_15080 0.56 +0.5
241,164 - CSW01_15080 0.64 -1.7
241,169 + CSW01_15080 0.64 +0.6
241,199 - CSW01_15080 0.66 +0.3
241,294 + CSW01_15080 0.72 +1.1
241,393 - CSW01_15080 0.78 +0.1
241,436 - CSW01_15080 0.81 +0.0
241,438 + CSW01_15080 0.81 +0.7
241,438 + CSW01_15080 0.81 +0.6
241,453 + CSW01_15080 0.82 +1.6
241,484 + CSW01_15080 0.83 -2.5
241,617 + -0.6
241,678 + -1.4
241,684 + -2.2
241,686 - -1.9
241,687 - -3.6
241,879 - -0.4
242,102 - -0.2
242,146 - +1.3
242,153 - -0.3
242,184 + +0.7
242,190 + +0.2
242,192 - +2.1
242,197 - CSW01_15085 0.10 -1.9
242,205 - CSW01_15085 0.11 +0.9
242,211 - CSW01_15085 0.12 +0.4
242,217 + CSW01_15085 0.12 -0.2
242,237 - CSW01_15085 0.14 +1.2
242,302 + CSW01_15085 0.21 +0.9
242,314 + CSW01_15085 0.22 -3.4
242,324 + CSW01_15085 0.24 +0.8
242,324 + CSW01_15085 0.24 +1.1
242,344 - CSW01_15085 0.26 -0.7
242,348 + CSW01_15085 0.26 +0.5
242,363 + CSW01_15085 0.28 +0.5
242,525 - CSW01_15085 0.45 -0.1
242,526 - CSW01_15085 0.45 -0.4
242,540 - CSW01_15085 0.47 +1.5
242,594 - CSW01_15085 0.52 -0.3
242,600 - CSW01_15085 0.53 -0.1
242,600 - CSW01_15085 0.53 -0.2
242,600 - CSW01_15085 0.53 +1.0
242,600 - CSW01_15085 0.53 -1.9
242,600 - CSW01_15085 0.53 +1.3
242,678 - CSW01_15085 0.61 -0.0
242,705 + CSW01_15085 0.64 -1.8
242,705 + CSW01_15085 0.64 -0.8
242,713 - CSW01_15085 0.65 -3.3
242,713 - CSW01_15085 0.65 +0.6
242,713 - CSW01_15085 0.65 -1.0
242,740 + CSW01_15085 0.68 +0.7

Or see this region's nucleotide sequence