Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14990 and CSW01_14995 are separated by 67 nucleotides CSW01_14995 and CSW01_15000 are separated by 43 nucleotides CSW01_15000 and CSW01_15005 overlap by 26 nucleotides CSW01_15005 and CSW01_15010 are separated by 148 nucleotides
CSW01_14990: CSW01_14990 - hypothetical protein, at 218,874 to 219,752
_14990
CSW01_14995: CSW01_14995 - IS200/IS605 family transposase IS1004, at 219,820 to 220,257
_14995
CSW01_15000: CSW01_15000 - rfbP protein, at 220,301 to 220,414
_15000
CSW01_15005: CSW01_15005 - HNH endonuclease, at 220,389 to 220,613
_15005
CSW01_15010: CSW01_15010 - ATP-dependent RNA helicase RhlE, at 220,762 to 222,117
_15010
Position (kb) 220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 219.327 kb on + strand, within CSW01_14990 at 219.347 kb on + strand, within CSW01_14990 at 219.396 kb on + strand, within CSW01_14990 at 219.396 kb on + strand, within CSW01_14990 at 219.396 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.397 kb on + strand, within CSW01_14990 at 219.404 kb on + strand, within CSW01_14990 at 219.404 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.405 kb on - strand, within CSW01_14990 at 219.460 kb on - strand, within CSW01_14990 at 219.519 kb on + strand, within CSW01_14990 at 219.536 kb on - strand, within CSW01_14990 at 219.536 kb on - strand, within CSW01_14990 at 219.538 kb on + strand, within CSW01_14990 at 219.538 kb on + strand, within CSW01_14990 at 219.538 kb on - strand, within CSW01_14990 at 219.546 kb on - strand, within CSW01_14990 at 219.546 kb on - strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.548 kb on + strand, within CSW01_14990 at 219.551 kb on - strand, within CSW01_14990 at 219.554 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.556 kb on - strand, within CSW01_14990 at 219.721 kb on - strand at 220.388 kb on + strand, within CSW01_15000 at 220.408 kb on + strand at 220.421 kb on + strand, within CSW01_15005 at 220.443 kb on + strand, within CSW01_15005 at 220.560 kb on + strand, within CSW01_15005 at 220.626 kb on + strand at 220.725 kb on + strand at 220.891 kb on + strand at 220.899 kb on - strand, within CSW01_15010 at 221.098 kb on + strand, within CSW01_15010 at 221.121 kb on + strand, within CSW01_15010 at 221.246 kb on - strand, within CSW01_15010 at 221.262 kb on + strand, within CSW01_15010 at 221.320 kb on - strand, within CSW01_15010 at 221.390 kb on + strand, within CSW01_15010
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 219,327 + CSW01_14990 0.52 -1.0 219,347 + CSW01_14990 0.54 -3.1 219,396 + CSW01_14990 0.59 -0.3 219,396 + CSW01_14990 0.59 +1.0 219,396 + CSW01_14990 0.59 -0.8 219,397 + CSW01_14990 0.59 +0.7 219,397 + CSW01_14990 0.59 -0.2 219,397 + CSW01_14990 0.59 -0.1 219,397 + CSW01_14990 0.59 -0.5 219,397 + CSW01_14990 0.59 -2.1 219,397 + CSW01_14990 0.59 -3.1 219,397 + CSW01_14990 0.59 -0.1 219,397 + CSW01_14990 0.59 +1.1 219,397 + CSW01_14990 0.59 +0.3 219,397 + CSW01_14990 0.59 -0.7 219,397 + CSW01_14990 0.59 +0.6 219,397 + CSW01_14990 0.59 -3.5 219,397 + CSW01_14990 0.59 +0.3 219,397 + CSW01_14990 0.59 +0.9 219,397 + CSW01_14990 0.59 -3.1 219,397 + CSW01_14990 0.59 -2.1 219,397 + CSW01_14990 0.59 -0.2 219,397 + CSW01_14990 0.59 -0.1 219,404 + CSW01_14990 0.60 -0.8 219,404 - CSW01_14990 0.60 +1.5 219,405 - CSW01_14990 0.60 -2.8 219,405 - CSW01_14990 0.60 -0.7 219,405 - CSW01_14990 0.60 +1.0 219,405 - CSW01_14990 0.60 +0.2 219,405 - CSW01_14990 0.60 -0.2 219,405 - CSW01_14990 0.60 -1.3 219,405 - CSW01_14990 0.60 -2.6 219,405 - CSW01_14990 0.60 +0.1 219,405 - CSW01_14990 0.60 -0.3 219,405 - CSW01_14990 0.60 -0.5 219,460 - CSW01_14990 0.67 +0.0 219,519 + CSW01_14990 0.73 -0.5 219,536 - CSW01_14990 0.75 +0.4 219,536 - CSW01_14990 0.75 -0.0 219,538 + CSW01_14990 0.76 -0.2 219,538 + CSW01_14990 0.76 -3.0 219,538 - CSW01_14990 0.76 -2.9 219,546 - CSW01_14990 0.76 -1.8 219,546 - CSW01_14990 0.76 -0.7 219,548 + CSW01_14990 0.77 +0.2 219,548 + CSW01_14990 0.77 +0.6 219,548 + CSW01_14990 0.77 -0.6 219,548 + CSW01_14990 0.77 -1.8 219,548 + CSW01_14990 0.77 -1.0 219,548 + CSW01_14990 0.77 +0.4 219,548 + CSW01_14990 0.77 -0.5 219,551 - CSW01_14990 0.77 +0.5 219,554 - CSW01_14990 0.77 -0.2 219,556 - CSW01_14990 0.78 +0.1 219,556 - CSW01_14990 0.78 -2.6 219,556 - CSW01_14990 0.78 +0.7 219,556 - CSW01_14990 0.78 -1.5 219,556 - CSW01_14990 0.78 -0.8 219,556 - CSW01_14990 0.78 +0.5 219,556 - CSW01_14990 0.78 -0.8 219,556 - CSW01_14990 0.78 -0.4 219,556 - CSW01_14990 0.78 +0.1 219,556 - CSW01_14990 0.78 +0.4 219,556 - CSW01_14990 0.78 -2.5 219,556 - CSW01_14990 0.78 +0.6 219,556 - CSW01_14990 0.78 -0.2 219,556 - CSW01_14990 0.78 -0.3 219,556 - CSW01_14990 0.78 -2.7 219,556 - CSW01_14990 0.78 -1.1 219,556 - CSW01_14990 0.78 -0.3 219,556 - CSW01_14990 0.78 -1.6 219,721 - +1.0 220,388 + CSW01_15000 0.76 +1.7 220,408 + -0.4 220,421 + CSW01_15005 0.14 +0.5 220,443 + CSW01_15005 0.24 +0.7 220,560 + CSW01_15005 0.76 +0.7 220,626 + +0.1 220,725 + -0.0 220,891 + +1.5 220,899 - CSW01_15010 0.10 -0.6 221,098 + CSW01_15010 0.25 -1.9 221,121 + CSW01_15010 0.26 -3.2 221,246 - CSW01_15010 0.36 -1.0 221,262 + CSW01_15010 0.37 -2.1 221,320 - CSW01_15010 0.41 -0.1 221,390 + CSW01_15010 0.46 +1.5
Or see this region's nucleotide sequence