Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14960

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14950 and CSW01_14955 are separated by 1 nucleotidesCSW01_14955 and CSW01_14960 are separated by 65 nucleotidesCSW01_14960 and CSW01_14965 are separated by 115 nucleotidesCSW01_14965 and CSW01_14970 are separated by 164 nucleotides CSW01_14950: CSW01_14950 - sodium:proton antiporter, at 209,743 to 211,086 _14950 CSW01_14955: CSW01_14955 - potassium channel protein, at 211,088 to 211,930 _14955 CSW01_14960: CSW01_14960 - hypothetical protein, at 211,996 to 212,544 _14960 CSW01_14965: CSW01_14965 - hypothetical protein, at 212,660 to 213,037 _14965 CSW01_14970: CSW01_14970 - guanosine monophosphate reductase, at 213,202 to 214,245 _14970 Position (kb) 211 212 213Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 211.005 kb on + strandat 211.094 kb on - strandat 211.158 kb on + strandat 211.198 kb on - strand, within CSW01_14955at 211.213 kb on - strand, within CSW01_14955at 211.396 kb on + strand, within CSW01_14955at 211.397 kb on + strand, within CSW01_14955at 211.397 kb on + strand, within CSW01_14955at 211.405 kb on - strand, within CSW01_14955at 211.431 kb on - strand, within CSW01_14955at 211.468 kb on - strand, within CSW01_14955at 211.489 kb on + strand, within CSW01_14955at 211.527 kb on + strand, within CSW01_14955at 211.532 kb on + strand, within CSW01_14955at 211.540 kb on - strand, within CSW01_14955at 211.611 kb on + strand, within CSW01_14955at 211.619 kb on - strand, within CSW01_14955at 211.669 kb on - strand, within CSW01_14955at 211.711 kb on - strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.714 kb on + strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.721 kb on - strand, within CSW01_14955at 211.722 kb on - strand, within CSW01_14955at 211.752 kb on - strand, within CSW01_14955at 211.765 kb on + strand, within CSW01_14955at 211.770 kb on + strand, within CSW01_14955at 211.778 kb on - strand, within CSW01_14955at 211.778 kb on - strand, within CSW01_14955at 211.918 kb on + strandat 211.926 kb on - strandat 211.926 kb on - strandat 211.926 kb on - strandat 211.960 kb on + strandat 211.960 kb on + strandat 211.991 kb on - strandat 212.068 kb on - strand, within CSW01_14960at 212.104 kb on - strand, within CSW01_14960at 212.109 kb on - strand, within CSW01_14960at 212.244 kb on - strand, within CSW01_14960at 212.248 kb on - strand, within CSW01_14960at 212.340 kb on + strand, within CSW01_14960at 212.363 kb on - strand, within CSW01_14960at 212.405 kb on + strand, within CSW01_14960at 212.408 kb on - strand, within CSW01_14960at 212.418 kb on - strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.443 kb on + strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.451 kb on - strand, within CSW01_14960at 212.562 kb on - strandat 212.613 kb on + strandat 212.760 kb on + strand, within CSW01_14965at 212.949 kb on - strand, within CSW01_14965at 212.982 kb on - strand, within CSW01_14965at 213.125 kb on + strandat 213.125 kb on + strandat 213.133 kb on - strandat 213.159 kb on + strandat 213.200 kb on - strandat 213.377 kb on + strand, within CSW01_14970at 213.387 kb on + strand, within CSW01_14970at 213.388 kb on + strand, within CSW01_14970at 213.393 kb on + strand, within CSW01_14970at 213.395 kb on - strand, within CSW01_14970at 213.401 kb on - strand, within CSW01_14970at 213.432 kb on + strand, within CSW01_14970at 213.433 kb on + strand, within CSW01_14970at 213.433 kb on + strand, within CSW01_14970at 213.440 kb on - strand, within CSW01_14970at 213.440 kb on - strand, within CSW01_14970at 213.489 kb on + strand, within CSW01_14970

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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211,005 + +0.5
211,094 - -3.8
211,158 + -0.3
211,198 - CSW01_14955 0.13 -0.1
211,213 - CSW01_14955 0.15 -1.5
211,396 + CSW01_14955 0.37 -0.7
211,397 + CSW01_14955 0.37 +0.7
211,397 + CSW01_14955 0.37 +0.6
211,405 - CSW01_14955 0.38 -2.2
211,431 - CSW01_14955 0.41 +2.1
211,468 - CSW01_14955 0.45 +0.7
211,489 + CSW01_14955 0.48 -0.0
211,527 + CSW01_14955 0.52 -0.5
211,532 + CSW01_14955 0.53 -3.6
211,540 - CSW01_14955 0.54 -4.0
211,611 + CSW01_14955 0.62 -1.0
211,619 - CSW01_14955 0.63 +0.5
211,669 - CSW01_14955 0.69 -0.3
211,711 - CSW01_14955 0.74 +1.8
211,714 + CSW01_14955 0.74 +0.4
211,714 + CSW01_14955 0.74 +0.3
211,714 + CSW01_14955 0.74 +0.5
211,714 + CSW01_14955 0.74 -0.3
211,721 - CSW01_14955 0.75 +1.3
211,721 - CSW01_14955 0.75 +0.8
211,721 - CSW01_14955 0.75 +0.9
211,722 - CSW01_14955 0.75 -0.3
211,752 - CSW01_14955 0.79 -0.9
211,765 + CSW01_14955 0.80 +0.7
211,770 + CSW01_14955 0.81 -2.4
211,778 - CSW01_14955 0.82 -0.0
211,778 - CSW01_14955 0.82 +0.3
211,918 + -0.1
211,926 - +0.2
211,926 - -2.6
211,926 - -1.1
211,960 + -0.8
211,960 + +1.8
211,991 - +0.6
212,068 - CSW01_14960 0.13 -0.6
212,104 - CSW01_14960 0.20 -0.3
212,109 - CSW01_14960 0.21 +1.9
212,244 - CSW01_14960 0.45 -2.0
212,248 - CSW01_14960 0.46 -2.7
212,340 + CSW01_14960 0.63 -0.8
212,363 - CSW01_14960 0.67 +0.0
212,405 + CSW01_14960 0.74 +0.3
212,408 - CSW01_14960 0.75 -1.6
212,418 - CSW01_14960 0.77 +0.5
212,443 + CSW01_14960 0.81 -0.7
212,443 + CSW01_14960 0.81 +0.4
212,443 + CSW01_14960 0.81 -0.9
212,443 + CSW01_14960 0.81 -0.4
212,443 + CSW01_14960 0.81 +0.5
212,443 + CSW01_14960 0.81 -1.9
212,451 - CSW01_14960 0.83 +0.4
212,451 - CSW01_14960 0.83 -2.0
212,451 - CSW01_14960 0.83 -1.2
212,451 - CSW01_14960 0.83 -0.3
212,562 - -1.0
212,613 + -0.8
212,760 + CSW01_14965 0.26 -0.3
212,949 - CSW01_14965 0.76 +0.4
212,982 - CSW01_14965 0.85 -0.5
213,125 + +0.4
213,125 + -2.9
213,133 - +0.8
213,159 + +0.6
213,200 - -0.1
213,377 + CSW01_14970 0.17 +1.4
213,387 + CSW01_14970 0.18 -0.5
213,388 + CSW01_14970 0.18 +1.3
213,393 + CSW01_14970 0.18 +0.6
213,395 - CSW01_14970 0.18 -1.5
213,401 - CSW01_14970 0.19 +1.3
213,432 + CSW01_14970 0.22 +1.9
213,433 + CSW01_14970 0.22 -1.4
213,433 + CSW01_14970 0.22 +0.8
213,440 - CSW01_14970 0.23 +0.8
213,440 - CSW01_14970 0.23 +1.1
213,489 + CSW01_14970 0.27 -0.5

Or see this region's nucleotide sequence