Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14805

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14800 and CSW01_14805 are separated by 78 nucleotidesCSW01_14805 and CSW01_14810 are separated by 471 nucleotidesCSW01_14810 and CSW01_14815 are separated by 237 nucleotides CSW01_14800: CSW01_14800 - transposase, at 177,190 to 178,425 _14800 CSW01_14805: CSW01_14805 - tryptophanase, at 178,504 to 179,922 _14805 CSW01_14810: CSW01_14810 - tryptophanase leader peptide, at 180,394 to 180,465 _14810 CSW01_14815: CSW01_14815 - hypothetical protein, at 180,703 to 180,915 _14815 Position (kb) 178 179 180Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 177.529 kb on + strand, within CSW01_14800at 177.529 kb on + strand, within CSW01_14800at 177.577 kb on + strand, within CSW01_14800at 177.868 kb on + strand, within CSW01_14800at 177.900 kb on + strand, within CSW01_14800at 177.949 kb on + strand, within CSW01_14800at 177.993 kb on - strand, within CSW01_14800at 178.049 kb on - strand, within CSW01_14800at 178.169 kb on - strand, within CSW01_14800at 178.193 kb on + strand, within CSW01_14800at 178.219 kb on - strand, within CSW01_14800at 178.279 kb on - strand, within CSW01_14800at 178.287 kb on + strand, within CSW01_14800at 178.287 kb on + strand, within CSW01_14800at 178.295 kb on - strand, within CSW01_14800at 178.319 kb on + strandat 178.384 kb on - strandat 178.564 kb on + strandat 178.564 kb on + strandat 178.571 kb on + strandat 178.579 kb on - strandat 178.677 kb on - strand, within CSW01_14805at 178.743 kb on - strand, within CSW01_14805at 178.783 kb on + strand, within CSW01_14805at 178.783 kb on + strand, within CSW01_14805at 178.824 kb on - strand, within CSW01_14805at 178.892 kb on - strand, within CSW01_14805at 178.913 kb on - strand, within CSW01_14805at 178.954 kb on + strand, within CSW01_14805at 179.007 kb on - strand, within CSW01_14805at 179.048 kb on + strand, within CSW01_14805at 179.083 kb on + strand, within CSW01_14805at 179.083 kb on + strand, within CSW01_14805at 179.135 kb on - strand, within CSW01_14805at 179.167 kb on - strand, within CSW01_14805at 179.194 kb on + strand, within CSW01_14805at 179.288 kb on + strand, within CSW01_14805at 179.337 kb on - strand, within CSW01_14805at 179.375 kb on + strand, within CSW01_14805at 179.477 kb on + strand, within CSW01_14805at 179.500 kb on + strand, within CSW01_14805at 179.500 kb on + strand, within CSW01_14805at 179.508 kb on - strand, within CSW01_14805at 179.594 kb on + strand, within CSW01_14805at 179.604 kb on + strand, within CSW01_14805at 179.612 kb on - strand, within CSW01_14805at 179.666 kb on + strand, within CSW01_14805at 179.698 kb on + strand, within CSW01_14805at 179.706 kb on - strand, within CSW01_14805at 179.707 kb on - strand, within CSW01_14805at 179.714 kb on + strand, within CSW01_14805at 179.756 kb on + strand, within CSW01_14805at 179.756 kb on + strand, within CSW01_14805at 179.764 kb on - strand, within CSW01_14805at 179.775 kb on + strand, within CSW01_14805at 179.775 kb on + strand, within CSW01_14805at 179.790 kb on + strandat 179.795 kb on - strandat 179.810 kb on + strandat 179.819 kb on - strandat 179.847 kb on + strandat 179.855 kb on - strandat 179.860 kb on + strandat 179.860 kb on - strandat 179.868 kb on - strandat 180.050 kb on - strandat 180.096 kb on + strandat 180.163 kb on + strandat 180.163 kb on + strandat 180.168 kb on + strandat 180.176 kb on - strandat 180.176 kb on - strandat 180.178 kb on - strandat 180.178 kb on - strandat 180.179 kb on + strandat 180.179 kb on + strandat 180.194 kb on + strandat 180.197 kb on - strandat 180.203 kb on - strandat 180.256 kb on + strandat 180.258 kb on - strandat 180.264 kb on - strandat 180.282 kb on + strandat 180.284 kb on + strandat 180.284 kb on + strandat 180.291 kb on - strandat 180.293 kb on + strandat 180.293 kb on - strandat 180.319 kb on + strandat 180.391 kb on + strandat 180.391 kb on + strandat 180.429 kb on + strand, within CSW01_14810at 180.429 kb on + strand, within CSW01_14810at 180.437 kb on - strand, within CSW01_14810at 180.437 kb on - strand, within CSW01_14810at 180.437 kb on - strand, within CSW01_14810at 180.448 kb on + strand, within CSW01_14810at 180.451 kb on - strand, within CSW01_14810at 180.527 kb on + strandat 180.603 kb on - strandat 180.652 kb on + strandat 180.652 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.658 kb on + strandat 180.662 kb on - strandat 180.663 kb on + strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.666 kb on - strandat 180.697 kb on - strandat 180.766 kb on + strand, within CSW01_14815at 180.786 kb on + strand, within CSW01_14815at 180.855 kb on + strand, within CSW01_14815at 180.863 kb on - strand, within CSW01_14815at 180.888 kb on - strand, within CSW01_14815at 180.901 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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177,529 + CSW01_14800 0.27 -1.9
177,529 + CSW01_14800 0.27 +0.6
177,577 + CSW01_14800 0.31 +0.8
177,868 + CSW01_14800 0.55 +1.0
177,900 + CSW01_14800 0.57 -3.3
177,949 + CSW01_14800 0.61 -0.5
177,993 - CSW01_14800 0.65 +1.5
178,049 - CSW01_14800 0.69 +0.0
178,169 - CSW01_14800 0.79 +1.9
178,193 + CSW01_14800 0.81 -1.2
178,219 - CSW01_14800 0.83 -0.8
178,279 - CSW01_14800 0.88 +0.4
178,287 + CSW01_14800 0.89 -1.8
178,287 + CSW01_14800 0.89 -0.5
178,295 - CSW01_14800 0.89 +0.4
178,319 + -0.3
178,384 - +1.0
178,564 + -0.0
178,564 + +0.3
178,571 + +0.7
178,579 - +2.5
178,677 - CSW01_14805 0.12 -0.3
178,743 - CSW01_14805 0.17 -0.2
178,783 + CSW01_14805 0.20 -2.1
178,783 + CSW01_14805 0.20 +2.0
178,824 - CSW01_14805 0.23 +1.0
178,892 - CSW01_14805 0.27 +0.6
178,913 - CSW01_14805 0.29 -0.5
178,954 + CSW01_14805 0.32 +0.9
179,007 - CSW01_14805 0.35 +0.6
179,048 + CSW01_14805 0.38 -0.6
179,083 + CSW01_14805 0.41 -1.3
179,083 + CSW01_14805 0.41 -2.5
179,135 - CSW01_14805 0.44 -3.6
179,167 - CSW01_14805 0.47 -0.4
179,194 + CSW01_14805 0.49 -0.4
179,288 + CSW01_14805 0.55 -3.8
179,337 - CSW01_14805 0.59 +0.0
179,375 + CSW01_14805 0.61 -0.1
179,477 + CSW01_14805 0.69 -0.4
179,500 + CSW01_14805 0.70 -0.1
179,500 + CSW01_14805 0.70 -0.9
179,508 - CSW01_14805 0.71 -2.8
179,594 + CSW01_14805 0.77 +0.9
179,604 + CSW01_14805 0.78 +0.9
179,612 - CSW01_14805 0.78 +1.6
179,666 + CSW01_14805 0.82 +0.5
179,698 + CSW01_14805 0.84 +0.4
179,706 - CSW01_14805 0.85 -2.6
179,707 - CSW01_14805 0.85 -2.2
179,714 + CSW01_14805 0.85 +0.7
179,756 + CSW01_14805 0.88 -1.3
179,756 + CSW01_14805 0.88 +1.8
179,764 - CSW01_14805 0.89 +1.6
179,775 + CSW01_14805 0.90 -0.0
179,775 + CSW01_14805 0.90 +1.8
179,790 + +0.1
179,795 - -2.0
179,810 + -0.3
179,819 - -0.2
179,847 + +0.4
179,855 - +1.1
179,860 + +0.7
179,860 - -0.7
179,868 - +1.6
180,050 - +0.0
180,096 + +0.1
180,163 + +0.6
180,163 + +0.3
180,168 + -1.0
180,176 - +0.2
180,176 - -3.4
180,178 - -0.1
180,178 - -0.8
180,179 + -3.0
180,179 + -3.0
180,194 + +0.2
180,197 - -0.5
180,203 - -0.4
180,256 + -1.4
180,258 - +0.6
180,264 - +0.5
180,282 + +0.4
180,284 + +1.1
180,284 + +0.4
180,291 - -2.1
180,293 + -2.9
180,293 - +0.2
180,319 + -0.2
180,391 + +0.8
180,391 + +0.9
180,429 + CSW01_14810 0.49 -1.6
180,429 + CSW01_14810 0.49 -1.8
180,437 - CSW01_14810 0.60 +0.4
180,437 - CSW01_14810 0.60 -0.4
180,437 - CSW01_14810 0.60 +2.0
180,448 + CSW01_14810 0.75 -1.4
180,451 - CSW01_14810 0.79 -2.8
180,527 + +1.5
180,603 - -0.4
180,652 + +1.3
180,652 + -2.2
180,658 + -0.3
180,658 + +1.3
180,658 + +0.2
180,658 + -2.8
180,658 + +0.7
180,658 + -0.4
180,658 + +0.1
180,662 - -1.2
180,663 + -0.1
180,666 - -0.2
180,666 - -3.0
180,666 - +0.7
180,666 - -0.9
180,666 - +0.2
180,666 - +0.1
180,666 - +0.5
180,666 - +0.3
180,697 - -2.8
180,766 + CSW01_14815 0.30 +1.1
180,786 + CSW01_14815 0.39 +1.8
180,855 + CSW01_14815 0.71 -2.9
180,863 - CSW01_14815 0.75 -1.1
180,888 - CSW01_14815 0.87 -0.1
180,901 + -1.4

Or see this region's nucleotide sequence