Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14290

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14285 and CSW01_14290 overlap by 20 nucleotidesCSW01_14290 and CSW01_14295 are separated by 118 nucleotides CSW01_14285: CSW01_14285 - GGDEF domain-containing protein, at 56,582 to 58,162 _14285 CSW01_14290: CSW01_14290 - hypothetical protein, at 58,143 to 59,666 _14290 CSW01_14295: CSW01_14295 - lactate dehydrogenase, at 59,785 to 61,254 _14295 Position (kb) 58 59 60Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 57.257 kb on - strand, within CSW01_14285at 57.257 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.302 kb on - strand, within CSW01_14285at 57.368 kb on - strand, within CSW01_14285at 57.373 kb on - strand, within CSW01_14285at 57.415 kb on + strand, within CSW01_14285at 57.476 kb on - strand, within CSW01_14285at 57.476 kb on - strand, within CSW01_14285at 57.478 kb on + strand, within CSW01_14285at 57.526 kb on + strand, within CSW01_14285at 57.539 kb on - strand, within CSW01_14285at 57.546 kb on + strand, within CSW01_14285at 57.554 kb on - strand, within CSW01_14285at 57.576 kb on - strand, within CSW01_14285at 57.754 kb on - strand, within CSW01_14285at 57.755 kb on + strand, within CSW01_14285at 57.798 kb on - strand, within CSW01_14285at 57.818 kb on - strand, within CSW01_14285at 57.849 kb on + strand, within CSW01_14285at 57.849 kb on + strand, within CSW01_14285at 57.859 kb on - strand, within CSW01_14285at 57.905 kb on + strand, within CSW01_14285at 57.983 kb on + strand, within CSW01_14285at 58.043 kb on + strandat 58.186 kb on + strandat 58.215 kb on + strandat 58.262 kb on - strandat 58.262 kb on - strandat 58.363 kb on + strand, within CSW01_14290at 58.410 kb on - strand, within CSW01_14290at 58.460 kb on - strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.489 kb on + strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.497 kb on - strand, within CSW01_14290at 58.499 kb on + strand, within CSW01_14290at 58.539 kb on + strand, within CSW01_14290at 58.649 kb on + strand, within CSW01_14290at 58.816 kb on + strand, within CSW01_14290at 58.818 kb on + strand, within CSW01_14290at 58.826 kb on + strand, within CSW01_14290at 58.867 kb on - strand, within CSW01_14290at 58.967 kb on + strand, within CSW01_14290at 58.967 kb on + strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 58.975 kb on - strand, within CSW01_14290at 59.056 kb on - strand, within CSW01_14290at 59.102 kb on + strand, within CSW01_14290at 59.105 kb on - strand, within CSW01_14290at 59.105 kb on - strand, within CSW01_14290at 59.226 kb on - strand, within CSW01_14290at 59.231 kb on - strand, within CSW01_14290at 59.272 kb on - strand, within CSW01_14290at 59.317 kb on + strand, within CSW01_14290at 59.317 kb on + strand, within CSW01_14290at 59.427 kb on + strand, within CSW01_14290at 59.427 kb on + strand, within CSW01_14290at 59.427 kb on + strand, within CSW01_14290at 59.435 kb on - strand, within CSW01_14290at 59.477 kb on - strand, within CSW01_14290at 59.502 kb on + strand, within CSW01_14290at 59.524 kb on - strandat 59.535 kb on + strandat 59.540 kb on - strandat 59.547 kb on + strandat 59.555 kb on - strandat 59.569 kb on + strandat 59.625 kb on + strandat 59.669 kb on - strandat 59.760 kb on + strandat 59.768 kb on + strandat 59.768 kb on + strandat 59.768 kb on + strandat 60.005 kb on - strand, within CSW01_14295at 60.022 kb on + strand, within CSW01_14295at 60.043 kb on - strand, within CSW01_14295at 60.106 kb on + strand, within CSW01_14295at 60.145 kb on + strand, within CSW01_14295at 60.145 kb on + strand, within CSW01_14295at 60.244 kb on - strand, within CSW01_14295at 60.244 kb on - strand, within CSW01_14295at 60.292 kb on - strand, within CSW01_14295at 60.325 kb on + strand, within CSW01_14295at 60.326 kb on + strand, within CSW01_14295at 60.326 kb on + strand, within CSW01_14295at 60.333 kb on - strand, within CSW01_14295at 60.372 kb on - strand, within CSW01_14295at 60.454 kb on + strand, within CSW01_14295at 60.462 kb on + strand, within CSW01_14295at 60.462 kb on - strand, within CSW01_14295at 60.478 kb on - strand, within CSW01_14295at 60.478 kb on - strand, within CSW01_14295at 60.548 kb on + strand, within CSW01_14295at 60.582 kb on - strand, within CSW01_14295at 60.652 kb on + strand, within CSW01_14295at 60.652 kb on - strand, within CSW01_14295

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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57,257 - CSW01_14285 0.43 -0.1
57,257 - CSW01_14285 0.43 +0.7
57,302 - CSW01_14285 0.46 +0.1
57,302 - CSW01_14285 0.46 +0.2
57,368 - CSW01_14285 0.50 +1.3
57,373 - CSW01_14285 0.50 +0.4
57,415 + CSW01_14285 0.53 +2.4
57,476 - CSW01_14285 0.57 -4.0
57,476 - CSW01_14285 0.57 +0.8
57,478 + CSW01_14285 0.57 -0.7
57,526 + CSW01_14285 0.60 +0.6
57,539 - CSW01_14285 0.61 -2.1
57,546 + CSW01_14285 0.61 -2.2
57,554 - CSW01_14285 0.61 -4.6
57,576 - CSW01_14285 0.63 -1.8
57,754 - CSW01_14285 0.74 -2.9
57,755 + CSW01_14285 0.74 -1.8
57,798 - CSW01_14285 0.77 -3.1
57,818 - CSW01_14285 0.78 +0.4
57,849 + CSW01_14285 0.80 -0.6
57,849 + CSW01_14285 0.80 -0.1
57,859 - CSW01_14285 0.81 -3.1
57,905 + CSW01_14285 0.84 -1.2
57,983 + CSW01_14285 0.89 -1.6
58,043 + -0.4
58,186 + +0.4
58,215 + -1.1
58,262 - -3.4
58,262 - -0.1
58,363 + CSW01_14290 0.14 -0.6
58,410 - CSW01_14290 0.18 +0.8
58,460 - CSW01_14290 0.21 +0.6
58,489 + CSW01_14290 0.23 +1.6
58,489 + CSW01_14290 0.23 -0.0
58,489 + CSW01_14290 0.23 -2.8
58,489 + CSW01_14290 0.23 -3.1
58,489 + CSW01_14290 0.23 -0.2
58,489 + CSW01_14290 0.23 -0.2
58,489 + CSW01_14290 0.23 -0.8
58,497 - CSW01_14290 0.23 -3.2
58,497 - CSW01_14290 0.23 +0.0
58,497 - CSW01_14290 0.23 +1.2
58,497 - CSW01_14290 0.23 +0.3
58,499 + CSW01_14290 0.23 +0.7
58,539 + CSW01_14290 0.26 -1.6
58,649 + CSW01_14290 0.33 -0.1
58,816 + CSW01_14290 0.44 +2.2
58,818 + CSW01_14290 0.44 +0.3
58,826 + CSW01_14290 0.45 +0.2
58,867 - CSW01_14290 0.48 +0.9
58,967 + CSW01_14290 0.54 -3.9
58,967 + CSW01_14290 0.54 -2.4
58,975 - CSW01_14290 0.55 +0.2
58,975 - CSW01_14290 0.55 -1.0
58,975 - CSW01_14290 0.55 -1.1
58,975 - CSW01_14290 0.55 -3.5
58,975 - CSW01_14290 0.55 +0.2
59,056 - CSW01_14290 0.60 -0.1
59,102 + CSW01_14290 0.63 +1.8
59,105 - CSW01_14290 0.63 -1.6
59,105 - CSW01_14290 0.63 -0.1
59,226 - CSW01_14290 0.71 +0.5
59,231 - CSW01_14290 0.71 -1.3
59,272 - CSW01_14290 0.74 +0.4
59,317 + CSW01_14290 0.77 -0.2
59,317 + CSW01_14290 0.77 -1.6
59,427 + CSW01_14290 0.84 +0.4
59,427 + CSW01_14290 0.84 -2.5
59,427 + CSW01_14290 0.84 -4.2
59,435 - CSW01_14290 0.85 -0.2
59,477 - CSW01_14290 0.88 -0.8
59,502 + CSW01_14290 0.89 -0.9
59,524 - +0.3
59,535 + -1.6
59,540 - +1.5
59,547 + +0.2
59,555 - -1.9
59,569 + -0.8
59,625 + -0.4
59,669 - +0.7
59,760 + +0.2
59,768 + +1.7
59,768 + +1.0
59,768 + +0.2
60,005 - CSW01_14295 0.15 -0.6
60,022 + CSW01_14295 0.16 +2.5
60,043 - CSW01_14295 0.18 -1.9
60,106 + CSW01_14295 0.22 -1.8
60,145 + CSW01_14295 0.24 -3.3
60,145 + CSW01_14295 0.24 -0.3
60,244 - CSW01_14295 0.31 -1.1
60,244 - CSW01_14295 0.31 +0.6
60,292 - CSW01_14295 0.34 +1.1
60,325 + CSW01_14295 0.37 +0.3
60,326 + CSW01_14295 0.37 +0.8
60,326 + CSW01_14295 0.37 +0.1
60,333 - CSW01_14295 0.37 -1.5
60,372 - CSW01_14295 0.40 +1.4
60,454 + CSW01_14295 0.46 -1.6
60,462 + CSW01_14295 0.46 -1.0
60,462 - CSW01_14295 0.46 +0.2
60,478 - CSW01_14295 0.47 +0.2
60,478 - CSW01_14295 0.47 +0.0
60,548 + CSW01_14295 0.52 +0.5
60,582 - CSW01_14295 0.54 +0.9
60,652 + CSW01_14295 0.59 -1.0
60,652 - CSW01_14295 0.59 -3.6

Or see this region's nucleotide sequence