Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_14170

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_14165 and CSW01_14170 are separated by 115 nucleotidesCSW01_14170 and CSW01_14175 are separated by 277 nucleotides CSW01_14165: CSW01_14165 - fucose 4-O-acetylase, at 28,057 to 29,097 _14165 CSW01_14170: CSW01_14170 - AEC family transporter, at 29,213 to 30,205 _14170 CSW01_14175: CSW01_14175 - Anion transporter, at 30,483 to 31,871 _14175 Position (kb) 29 30 31Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 28.346 kb on + strand, within CSW01_14165at 28.348 kb on + strand, within CSW01_14165at 28.354 kb on - strand, within CSW01_14165at 28.368 kb on + strand, within CSW01_14165at 28.368 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.375 kb on + strand, within CSW01_14165at 28.393 kb on + strand, within CSW01_14165at 28.423 kb on - strand, within CSW01_14165at 28.455 kb on - strand, within CSW01_14165at 28.536 kb on - strand, within CSW01_14165at 28.552 kb on + strand, within CSW01_14165at 28.575 kb on + strand, within CSW01_14165at 28.575 kb on + strand, within CSW01_14165at 28.575 kb on + strand, within CSW01_14165at 28.576 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.583 kb on - strand, within CSW01_14165at 28.890 kb on + strand, within CSW01_14165at 28.956 kb on + strand, within CSW01_14165at 29.049 kb on + strandat 29.057 kb on - strandat 29.081 kb on - strandat 29.090 kb on - strandat 29.196 kb on + strandat 29.211 kb on + strandat 29.219 kb on - strandat 29.258 kb on + strandat 29.266 kb on - strandat 29.335 kb on + strand, within CSW01_14170at 29.359 kb on + strand, within CSW01_14170at 29.432 kb on + strand, within CSW01_14170at 29.432 kb on + strand, within CSW01_14170at 29.440 kb on - strand, within CSW01_14170at 29.440 kb on - strand, within CSW01_14170at 29.531 kb on - strand, within CSW01_14170at 29.546 kb on + strand, within CSW01_14170at 29.601 kb on - strand, within CSW01_14170at 29.691 kb on + strand, within CSW01_14170at 29.776 kb on + strand, within CSW01_14170at 29.816 kb on - strand, within CSW01_14170at 29.870 kb on + strand, within CSW01_14170at 29.906 kb on - strand, within CSW01_14170at 29.945 kb on + strand, within CSW01_14170at 30.013 kb on + strand, within CSW01_14170at 30.073 kb on + strand, within CSW01_14170at 30.184 kb on - strandat 30.189 kb on - strandat 30.340 kb on - strandat 30.462 kb on - strandat 30.462 kb on - strandat 30.587 kb on + strandat 30.603 kb on + strandat 30.653 kb on + strand, within CSW01_14175at 30.736 kb on + strand, within CSW01_14175at 30.800 kb on + strand, within CSW01_14175at 30.800 kb on + strand, within CSW01_14175at 30.817 kb on + strand, within CSW01_14175at 30.827 kb on + strand, within CSW01_14175at 30.827 kb on + strand, within CSW01_14175at 30.885 kb on + strand, within CSW01_14175at 31.051 kb on + strand, within CSW01_14175

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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28,346 + CSW01_14165 0.28 -2.8
28,348 + CSW01_14165 0.28 -1.4
28,354 - CSW01_14165 0.29 +0.4
28,368 + CSW01_14165 0.30 +1.1
28,368 + CSW01_14165 0.30 -2.6
28,375 + CSW01_14165 0.31 +0.8
28,375 + CSW01_14165 0.31 +0.4
28,375 + CSW01_14165 0.31 +0.5
28,375 + CSW01_14165 0.31 -3.0
28,393 + CSW01_14165 0.32 -0.2
28,423 - CSW01_14165 0.35 -1.7
28,455 - CSW01_14165 0.38 -1.0
28,536 - CSW01_14165 0.46 -1.0
28,552 + CSW01_14165 0.48 -0.4
28,575 + CSW01_14165 0.50 -1.2
28,575 + CSW01_14165 0.50 +1.1
28,575 + CSW01_14165 0.50 -2.5
28,576 - CSW01_14165 0.50 +0.4
28,583 - CSW01_14165 0.51 +0.2
28,583 - CSW01_14165 0.51 +1.9
28,583 - CSW01_14165 0.51 +0.7
28,583 - CSW01_14165 0.51 -1.0
28,583 - CSW01_14165 0.51 -1.4
28,890 + CSW01_14165 0.80 +0.7
28,956 + CSW01_14165 0.86 -0.3
29,049 + -3.2
29,057 - +0.6
29,081 - -0.1
29,090 - -0.1
29,196 + -0.1
29,211 + +0.3
29,219 - +0.6
29,258 + +0.9
29,266 - -1.3
29,335 + CSW01_14170 0.12 +0.1
29,359 + CSW01_14170 0.15 +1.5
29,432 + CSW01_14170 0.22 -3.1
29,432 + CSW01_14170 0.22 +0.2
29,440 - CSW01_14170 0.23 +0.8
29,440 - CSW01_14170 0.23 -0.4
29,531 - CSW01_14170 0.32 +1.6
29,546 + CSW01_14170 0.34 -0.3
29,601 - CSW01_14170 0.39 -0.2
29,691 + CSW01_14170 0.48 -2.0
29,776 + CSW01_14170 0.57 -1.4
29,816 - CSW01_14170 0.61 -0.1
29,870 + CSW01_14170 0.66 -2.3
29,906 - CSW01_14170 0.70 +2.0
29,945 + CSW01_14170 0.74 -0.4
30,013 + CSW01_14170 0.81 -1.1
30,073 + CSW01_14170 0.87 -1.0
30,184 - +0.9
30,189 - +0.4
30,340 - +0.5
30,462 - +1.7
30,462 - +0.2
30,587 + +2.2
30,603 + +0.5
30,653 + CSW01_14175 0.12 -3.1
30,736 + CSW01_14175 0.18 -1.2
30,800 + CSW01_14175 0.23 +0.8
30,800 + CSW01_14175 0.23 -1.7
30,817 + CSW01_14175 0.24 +0.1
30,827 + CSW01_14175 0.25 +1.5
30,827 + CSW01_14175 0.25 -0.3
30,885 + CSW01_14175 0.29 +0.3
31,051 + CSW01_14175 0.41 -0.4

Or see this region's nucleotide sequence