Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14115 and CSW01_14120 are separated by 85 nucleotides CSW01_14120 and CSW01_14125 are separated by 205 nucleotides
CSW01_14115: CSW01_14115 - glycogen/starch/alpha-glucan phosphorylase, at 12,271 to 14,724
_14115
CSW01_14120: CSW01_14120 - 4-alpha-glucanotransferase, at 14,810 to 16,990
_14120
CSW01_14125: CSW01_14125 - 1,4-alpha-glucan branching enzyme, at 17,196 to 19,385
_14125
Position (kb) 14
15
16
17 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 13.938 kb on + strand, within CSW01_14115 at 14.021 kb on + strand, within CSW01_14115 at 14.087 kb on - strand, within CSW01_14115 at 14.110 kb on + strand, within CSW01_14115 at 14.156 kb on + strand, within CSW01_14115 at 14.220 kb on - strand, within CSW01_14115 at 14.230 kb on + strand, within CSW01_14115 at 14.256 kb on + strand, within CSW01_14115 at 14.276 kb on - strand, within CSW01_14115 at 14.276 kb on - strand, within CSW01_14115 at 14.283 kb on + strand, within CSW01_14115 at 14.290 kb on + strand, within CSW01_14115 at 14.372 kb on + strand, within CSW01_14115 at 14.389 kb on + strand, within CSW01_14115 at 14.404 kb on - strand, within CSW01_14115 at 14.404 kb on - strand, within CSW01_14115 at 14.423 kb on + strand, within CSW01_14115 at 14.433 kb on + strand, within CSW01_14115 at 14.441 kb on - strand, within CSW01_14115 at 14.462 kb on - strand, within CSW01_14115 at 14.469 kb on - strand, within CSW01_14115 at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.503 kb on + strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.511 kb on - strand at 14.639 kb on - strand at 14.674 kb on + strand at 14.682 kb on - strand at 14.708 kb on + strand at 14.708 kb on + strand at 14.708 kb on + strand at 14.708 kb on + strand at 14.711 kb on + strand at 14.713 kb on + strand at 14.713 kb on + strand at 14.713 kb on + strand at 14.716 kb on - strand at 14.718 kb on + strand at 14.726 kb on - strand at 14.737 kb on + strand at 14.778 kb on - strand at 14.813 kb on + strand at 14.884 kb on - strand at 15.022 kb on + strand at 15.030 kb on - strand, within CSW01_14120 at 15.054 kb on + strand, within CSW01_14120 at 15.062 kb on - strand, within CSW01_14120 at 15.062 kb on - strand, within CSW01_14120 at 15.062 kb on - strand, within CSW01_14120 at 15.118 kb on + strand, within CSW01_14120 at 15.190 kb on + strand, within CSW01_14120 at 15.198 kb on - strand, within CSW01_14120 at 15.239 kb on - strand, within CSW01_14120 at 15.286 kb on - strand, within CSW01_14120 at 15.302 kb on + strand, within CSW01_14120 at 15.343 kb on + strand, within CSW01_14120 at 15.343 kb on + strand, within CSW01_14120 at 15.343 kb on + strand, within CSW01_14120 at 15.351 kb on - strand, within CSW01_14120 at 15.351 kb on - strand, within CSW01_14120 at 15.375 kb on - strand, within CSW01_14120 at 15.444 kb on + strand, within CSW01_14120 at 15.466 kb on + strand, within CSW01_14120 at 15.491 kb on + strand, within CSW01_14120 at 15.527 kb on + strand, within CSW01_14120 at 15.570 kb on + strand, within CSW01_14120 at 15.642 kb on + strand, within CSW01_14120 at 15.687 kb on - strand, within CSW01_14120 at 15.749 kb on + strand, within CSW01_14120 at 15.749 kb on + strand, within CSW01_14120 at 15.836 kb on - strand, within CSW01_14120 at 15.842 kb on + strand, within CSW01_14120 at 15.842 kb on + strand, within CSW01_14120 at 15.850 kb on - strand, within CSW01_14120 at 15.850 kb on - strand, within CSW01_14120 at 15.850 kb on - strand, within CSW01_14120 at 15.850 kb on - strand, within CSW01_14120 at 15.850 kb on - strand, within CSW01_14120 at 15.934 kb on + strand, within CSW01_14120 at 16.159 kb on + strand, within CSW01_14120 at 16.164 kb on + strand, within CSW01_14120 at 16.172 kb on - strand, within CSW01_14120 at 16.239 kb on - strand, within CSW01_14120 at 16.264 kb on - strand, within CSW01_14120 at 16.275 kb on - strand, within CSW01_14120 at 16.300 kb on - strand, within CSW01_14120 at 16.373 kb on + strand, within CSW01_14120 at 16.373 kb on + strand, within CSW01_14120 at 16.381 kb on - strand, within CSW01_14120 at 16.405 kb on - strand, within CSW01_14120 at 16.526 kb on - strand, within CSW01_14120 at 16.557 kb on + strand, within CSW01_14120 at 16.557 kb on + strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.565 kb on - strand, within CSW01_14120 at 16.623 kb on - strand, within CSW01_14120 at 16.772 kb on + strand, within CSW01_14120 at 16.780 kb on - strand at 17.072 kb on + strand at 17.080 kb on - strand at 17.189 kb on - strand at 17.286 kb on + strand at 17.301 kb on + strand at 17.427 kb on - strand, within CSW01_14125 at 17.441 kb on + strand, within CSW01_14125 at 17.475 kb on - strand, within CSW01_14125 at 17.520 kb on - strand, within CSW01_14125 at 17.586 kb on - strand, within CSW01_14125 at 17.629 kb on - strand, within CSW01_14125 at 17.679 kb on - strand, within CSW01_14125 at 17.829 kb on + strand, within CSW01_14125 at 17.837 kb on - strand, within CSW01_14125 at 17.921 kb on + strand, within CSW01_14125
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 13,938 + CSW01_14115 0.68 +0.0 14,021 + CSW01_14115 0.71 +2.2 14,087 - CSW01_14115 0.74 -1.3 14,110 + CSW01_14115 0.75 -2.3 14,156 + CSW01_14115 0.77 -0.8 14,220 - CSW01_14115 0.79 -1.8 14,230 + CSW01_14115 0.80 +0.5 14,256 + CSW01_14115 0.81 -1.0 14,276 - CSW01_14115 0.82 -0.7 14,276 - CSW01_14115 0.82 +0.6 14,283 + CSW01_14115 0.82 +0.1 14,290 + CSW01_14115 0.82 +0.5 14,372 + CSW01_14115 0.86 +1.6 14,389 + CSW01_14115 0.86 +0.5 14,404 - CSW01_14115 0.87 +0.2 14,404 - CSW01_14115 0.87 -3.7 14,423 + CSW01_14115 0.88 -3.3 14,433 + CSW01_14115 0.88 +1.6 14,441 - CSW01_14115 0.88 -1.4 14,462 - CSW01_14115 0.89 -2.1 14,469 - CSW01_14115 0.90 -2.2 14,503 + +2.1 14,503 + +0.8 14,503 + +0.5 14,503 + +1.4 14,503 + -2.2 14,503 + -1.4 14,503 + +1.2 14,503 + -0.4 14,503 + +0.6 14,503 + +1.3 14,503 + +0.8 14,503 + -2.2 14,511 - -1.0 14,511 - -2.1 14,511 - -2.0 14,511 - -1.6 14,511 - +2.4 14,511 - +0.3 14,639 - -0.7 14,674 + -1.8 14,682 - -2.6 14,708 + +4.0 14,708 + -0.0 14,708 + +0.2 14,708 + -0.6 14,711 + -1.6 14,713 + -2.5 14,713 + -1.1 14,713 + +0.2 14,716 - +0.2 14,718 + -3.0 14,726 - -3.0 14,737 + -3.3 14,778 - +1.1 14,813 + +0.6 14,884 - -1.2 15,022 + -3.0 15,030 - CSW01_14120 0.10 +0.7 15,054 + CSW01_14120 0.11 -1.8 15,062 - CSW01_14120 0.12 -3.1 15,062 - CSW01_14120 0.12 -2.0 15,062 - CSW01_14120 0.12 -1.8 15,118 + CSW01_14120 0.14 -3.2 15,190 + CSW01_14120 0.17 +1.0 15,198 - CSW01_14120 0.18 -0.2 15,239 - CSW01_14120 0.20 +0.4 15,286 - CSW01_14120 0.22 -1.8 15,302 + CSW01_14120 0.23 -2.4 15,343 + CSW01_14120 0.24 -1.4 15,343 + CSW01_14120 0.24 -0.3 15,343 + CSW01_14120 0.24 -2.6 15,351 - CSW01_14120 0.25 +1.4 15,351 - CSW01_14120 0.25 +3.7 15,375 - CSW01_14120 0.26 -0.8 15,444 + CSW01_14120 0.29 -1.2 15,466 + CSW01_14120 0.30 +1.4 15,491 + CSW01_14120 0.31 -0.3 15,527 + CSW01_14120 0.33 +0.4 15,570 + CSW01_14120 0.35 -3.4 15,642 + CSW01_14120 0.38 -1.7 15,687 - CSW01_14120 0.40 -0.6 15,749 + CSW01_14120 0.43 -2.7 15,749 + CSW01_14120 0.43 -3.2 15,836 - CSW01_14120 0.47 +0.1 15,842 + CSW01_14120 0.47 -1.0 15,842 + CSW01_14120 0.47 +0.6 15,850 - CSW01_14120 0.48 +1.2 15,850 - CSW01_14120 0.48 +1.1 15,850 - CSW01_14120 0.48 -1.9 15,850 - CSW01_14120 0.48 -3.6 15,850 - CSW01_14120 0.48 -1.7 15,934 + CSW01_14120 0.52 -1.8 16,159 + CSW01_14120 0.62 -2.2 16,164 + CSW01_14120 0.62 -2.3 16,172 - CSW01_14120 0.62 -1.0 16,239 - CSW01_14120 0.66 -0.1 16,264 - CSW01_14120 0.67 -0.0 16,275 - CSW01_14120 0.67 -1.2 16,300 - CSW01_14120 0.68 -0.2 16,373 + CSW01_14120 0.72 -2.2 16,373 + CSW01_14120 0.72 -1.0 16,381 - CSW01_14120 0.72 +0.2 16,405 - CSW01_14120 0.73 -0.2 16,526 - CSW01_14120 0.79 +2.2 16,557 + CSW01_14120 0.80 -1.0 16,557 + CSW01_14120 0.80 +0.0 16,565 - CSW01_14120 0.80 -1.6 16,565 - CSW01_14120 0.80 -0.7 16,565 - CSW01_14120 0.80 -1.0 16,565 - CSW01_14120 0.80 -2.4 16,623 - CSW01_14120 0.83 -1.7 16,772 + CSW01_14120 0.90 -3.0 16,780 - -2.1 17,072 + -0.4 17,080 - +0.7 17,189 - +1.4 17,286 + -1.8 17,301 + -0.8 17,427 - CSW01_14125 0.11 +0.9 17,441 + CSW01_14125 0.11 -0.3 17,475 - CSW01_14125 0.13 -2.8 17,520 - CSW01_14125 0.15 +0.5 17,586 - CSW01_14125 0.18 +2.5 17,629 - CSW01_14125 0.20 -1.2 17,679 - CSW01_14125 0.22 +1.3 17,829 + CSW01_14125 0.29 +1.3 17,837 - CSW01_14125 0.29 +1.9 17,921 + CSW01_14125 0.33 -1.2
Or see this region's nucleotide sequence