Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_14080 and CSW01_14085 are separated by 87 nucleotides CSW01_14085 and CSW01_14090 are separated by 114 nucleotides CSW01_14090 and CSW01_14095 are separated by 103 nucleotides
CSW01_14080: CSW01_14080 - DUF3283 domain-containing protein, at 4,445 to 4,723
_14080
CSW01_14085: CSW01_14085 - transcriptional regulator, at 4,811 to 5,530
_14085
CSW01_14090: CSW01_14090 - NAD(P)-dependent oxidoreductase, at 5,645 to 6,520
_14090
CSW01_14095: CSW01_14095 - methyl-accepting chemotaxis protein, at 6,624 to 8,285
_14095
Position (kb) 5
6
7 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4.682 kb on - strand, within CSW01_14080 at 4.755 kb on + strand at 4.867 kb on + strand at 4.875 kb on - strand at 5.111 kb on - strand, within CSW01_14085 at 5.130 kb on + strand, within CSW01_14085 at 5.393 kb on + strand, within CSW01_14085 at 5.429 kb on + strand, within CSW01_14085 at 5.429 kb on + strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.437 kb on - strand, within CSW01_14085 at 5.503 kb on + strand at 5.758 kb on - strand, within CSW01_14090 at 5.830 kb on - strand, within CSW01_14090 at 5.860 kb on + strand, within CSW01_14090 at 5.912 kb on + strand, within CSW01_14090 at 5.934 kb on + strand, within CSW01_14090 at 5.948 kb on + strand, within CSW01_14090 at 5.949 kb on - strand, within CSW01_14090 at 5.956 kb on + strand, within CSW01_14090 at 5.964 kb on - strand, within CSW01_14090 at 5.964 kb on - strand, within CSW01_14090 at 6.019 kb on + strand, within CSW01_14090 at 6.079 kb on - strand, within CSW01_14090 at 6.086 kb on + strand, within CSW01_14090 at 6.138 kb on + strand, within CSW01_14090 at 6.146 kb on - strand, within CSW01_14090 at 6.229 kb on - strand, within CSW01_14090 at 6.240 kb on + strand, within CSW01_14090 at 6.398 kb on + strand, within CSW01_14090 at 6.404 kb on + strand, within CSW01_14090 at 6.406 kb on - strand, within CSW01_14090 at 6.460 kb on - strand at 6.480 kb on - strand at 6.485 kb on - strand at 6.485 kb on - strand at 6.569 kb on + strand at 6.569 kb on + strand at 6.577 kb on - strand at 6.586 kb on + strand at 6.609 kb on - strand at 6.671 kb on + strand at 6.704 kb on - strand at 6.785 kb on - strand at 6.816 kb on + strand, within CSW01_14095 at 6.818 kb on + strand, within CSW01_14095 at 6.818 kb on + strand, within CSW01_14095 at 6.895 kb on - strand, within CSW01_14095 at 6.943 kb on + strand, within CSW01_14095 at 6.969 kb on + strand, within CSW01_14095 at 7.013 kb on - strand, within CSW01_14095 at 7.021 kb on - strand, within CSW01_14095 at 7.041 kb on + strand, within CSW01_14095 at 7.063 kb on + strand, within CSW01_14095 at 7.118 kb on - strand, within CSW01_14095 at 7.203 kb on + strand, within CSW01_14095 at 7.203 kb on + strand, within CSW01_14095 at 7.203 kb on + strand, within CSW01_14095 at 7.203 kb on + strand, within CSW01_14095 at 7.211 kb on - strand, within CSW01_14095 at 7.211 kb on - strand, within CSW01_14095 at 7.221 kb on - strand, within CSW01_14095 at 7.414 kb on + strand, within CSW01_14095 at 7.477 kb on - strand, within CSW01_14095
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 4,682 - CSW01_14080 0.85 -1.0 4,755 + -1.0 4,867 + +1.0 4,875 - -2.6 5,111 - CSW01_14085 0.42 -0.1 5,130 + CSW01_14085 0.44 -1.2 5,393 + CSW01_14085 0.81 +1.8 5,429 + CSW01_14085 0.86 -3.3 5,429 + CSW01_14085 0.86 -1.6 5,437 - CSW01_14085 0.87 -0.6 5,437 - CSW01_14085 0.87 +0.6 5,437 - CSW01_14085 0.87 +1.5 5,437 - CSW01_14085 0.87 -0.6 5,503 + -0.7 5,758 - CSW01_14090 0.13 -0.5 5,830 - CSW01_14090 0.21 +0.9 5,860 + CSW01_14090 0.25 +0.6 5,912 + CSW01_14090 0.30 -1.1 5,934 + CSW01_14090 0.33 -0.0 5,948 + CSW01_14090 0.35 -1.2 5,949 - CSW01_14090 0.35 +0.5 5,956 + CSW01_14090 0.36 +0.4 5,964 - CSW01_14090 0.36 -2.8 5,964 - CSW01_14090 0.36 +0.8 6,019 + CSW01_14090 0.43 +0.4 6,079 - CSW01_14090 0.50 +1.8 6,086 + CSW01_14090 0.50 +0.1 6,138 + CSW01_14090 0.56 +0.7 6,146 - CSW01_14090 0.57 +0.2 6,229 - CSW01_14090 0.67 +0.5 6,240 + CSW01_14090 0.68 +0.6 6,398 + CSW01_14090 0.86 +0.5 6,404 + CSW01_14090 0.87 -0.3 6,406 - CSW01_14090 0.87 -3.0 6,460 - +2.2 6,480 - -2.0 6,485 - -0.6 6,485 - -2.2 6,569 + +0.7 6,569 + +1.0 6,577 - -0.1 6,586 + +1.6 6,609 - -3.4 6,671 + -0.5 6,704 - +2.0 6,785 - +0.4 6,816 + CSW01_14095 0.12 -0.3 6,818 + CSW01_14095 0.12 +0.7 6,818 + CSW01_14095 0.12 +0.5 6,895 - CSW01_14095 0.16 +1.6 6,943 + CSW01_14095 0.19 +0.4 6,969 + CSW01_14095 0.21 -2.6 7,013 - CSW01_14095 0.23 -2.5 7,021 - CSW01_14095 0.24 -0.0 7,041 + CSW01_14095 0.25 -0.0 7,063 + CSW01_14095 0.26 -0.5 7,118 - CSW01_14095 0.30 -2.0 7,203 + CSW01_14095 0.35 -4.1 7,203 + CSW01_14095 0.35 -0.8 7,203 + CSW01_14095 0.35 -1.4 7,203 + CSW01_14095 0.35 +1.8 7,211 - CSW01_14095 0.35 +1.5 7,211 - CSW01_14095 0.35 +2.4 7,221 - CSW01_14095 0.36 +0.7 7,414 + CSW01_14095 0.48 -2.2 7,477 - CSW01_14095 0.51 -1.6
Or see this region's nucleotide sequence