Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13685

Experiment: ICP1_phage_2.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep2
2,916,092	-		CSW01_13680	0.70	-0.5
2,916,093	+		CSW01_13680	0.70	+0.4
2,916,165	-		CSW01_13680	0.74	-1.0
2,916,196	+		CSW01_13680	0.75	+0.6
2,916,304	-		CSW01_13680	0.80	-1.7
2,916,362	-		CSW01_13680	0.83	-0.1
2,916,362	-		CSW01_13680	0.83	+0.2
2,916,377	+		CSW01_13680	0.84	-0.7
2,916,377	+		CSW01_13680	0.84	+0.4
2,916,387	+		CSW01_13680	0.84	+2.1
2,916,393	-		CSW01_13680	0.85	+1.0
2,916,394	+		CSW01_13680	0.85	-1.1
2,916,402	-		CSW01_13680	0.85	+1.5
2,916,405	+		CSW01_13680	0.85	+0.5
2,916,412	-		CSW01_13680	0.86	-0.8
2,916,413	-		CSW01_13680	0.86	+0.3
2,916,425	+		CSW01_13680	0.86	+0.2
2,916,435	+		CSW01_13680	0.87	+0.8
2,916,443	-		CSW01_13680	0.87	-0.0
2,916,544	+				+1.7
2,916,608	-				+1.2
2,916,608	-				-0.7
2,916,608	-				+0.5
2,916,610	+				+2.0
2,916,653	+				+0.2
2,916,677	+				+0.5
2,916,677	+				-0.3
2,916,677	+				+1.4
2,916,677	+				+0.7
2,916,677	+				-4.0
2,916,685	-				+0.4
2,916,685	-				-4.8
2,916,834	+				-0.0
2,916,950	+				-1.0
2,916,972	-				+2.1
2,917,008	-				-0.5
2,917,010	+				+1.3
2,917,018	-				-0.2
2,917,029	+				-2.5
2,917,078	+				-2.3
2,917,086	-				+1.8
2,917,091	-				+0.5
2,917,201	+		CSW01_13685	0.13	-3.0
2,917,223	+		CSW01_13685	0.14	+1.0
2,917,223	+		CSW01_13685	0.14	-3.0
2,917,288	+		CSW01_13685	0.19	+1.3
2,917,316	-		CSW01_13685	0.21	+0.9
2,917,392	+		CSW01_13685	0.26	-0.3
2,917,392	+		CSW01_13685	0.26	+1.1
2,917,474	+		CSW01_13685	0.31	-0.5
2,917,492	-		CSW01_13685	0.33	+0.1
2,917,495	+		CSW01_13685	0.33	-2.3
2,917,497	+		CSW01_13685	0.33	-0.5
2,917,515	+		CSW01_13685	0.34	+0.5
2,917,515	+		CSW01_13685	0.34	-0.9
2,917,531	+		CSW01_13685	0.35	-0.0
2,917,531	+		CSW01_13685	0.35	+1.9
2,917,531	+		CSW01_13685	0.35	+2.4
2,917,531	+		CSW01_13685	0.35	+0.3
2,917,531	+		CSW01_13685	0.35	+0.5
2,917,531	+		CSW01_13685	0.35	-1.9
2,917,539	-		CSW01_13685	0.36	+0.3
2,917,539	-		CSW01_13685	0.36	-0.7
2,917,539	-		CSW01_13685	0.36	+1.1
2,917,539	-		CSW01_13685	0.36	+1.6
2,917,539	-		CSW01_13685	0.36	-0.7
2,917,597	+		CSW01_13685	0.40	-2.0
2,917,625	+		CSW01_13685	0.42	-1.1
2,917,625	+		CSW01_13685	0.42	+3.6
2,917,653	+		CSW01_13685	0.44	-3.9
2,917,653	-		CSW01_13685	0.44	-3.8
2,917,655	+		CSW01_13685	0.44	+0.0
2,917,658	+		CSW01_13685	0.44	-1.2
2,917,663	-		CSW01_13685	0.45	+1.0
2,917,667	+		CSW01_13685	0.45	+0.3
2,917,717	-		CSW01_13685	0.48	-0.7
2,917,745	+		CSW01_13685	0.50	+1.7
2,917,753	-		CSW01_13685	0.51	-0.7
2,917,760	-		CSW01_13685	0.51	-3.3
2,917,782	+		CSW01_13685	0.53	+0.1
2,917,795	-		CSW01_13685	0.54	+0.3
2,917,806	+		CSW01_13685	0.54	-0.3
2,917,829	+		CSW01_13685	0.56	+1.9
2,917,829	+		CSW01_13685	0.56	+1.2
2,917,829	+		CSW01_13685	0.56	+0.1
2,917,837	-		CSW01_13685	0.57	-0.8
2,917,916	+		CSW01_13685	0.62	-2.5
2,917,917	+		CSW01_13685	0.62	-0.2
2,917,925	-		CSW01_13685	0.63	-4.3
2,917,943	+		CSW01_13685	0.64	-3.0
2,917,951	-		CSW01_13685	0.65	+1.2
2,917,994	+		CSW01_13685	0.67	+0.2
2,918,000	-		CSW01_13685	0.68	+0.1
2,918,056	-		CSW01_13685	0.72	-1.5
2,918,128	+		CSW01_13685	0.77	-1.5
2,918,136	-		CSW01_13685	0.77	+0.5
2,918,151	+		CSW01_13685	0.78	-0.7
2,918,235	-		CSW01_13685	0.84	+0.9
2,918,252	-		CSW01_13685	0.85	+0.5
2,918,252	-		CSW01_13685	0.85	-3.1
2,918,252	-		CSW01_13685	0.85	-2.4
2,918,261	+		CSW01_13685	0.86	+1.0
2,918,269	-		CSW01_13685	0.87	+1.0
2,918,282	-		CSW01_13685	0.87	+0.7
2,918,341	+				-0.1
2,918,349	-				+0.6
2,918,370	-				-0.4
2,918,377	+				+0.5
2,918,385	-				+1.3
2,918,392	+				-0.5
2,918,405	-				-0.9
2,918,474	+				+0.1
2,918,474	+				-0.2
2,918,474	+				-0.1
2,918,536	+				+0.9
2,918,537	-				-1.4
2,918,544	-				-0.4
2,918,574	-				+0.5
2,918,603	+				+0.8
2,918,604	+				+1.1
2,918,604	+				-0.2
2,918,604	+				-0.0
2,918,611	-				+0.6
2,918,612	-				-1.0
2,918,612	-				+1.3
2,918,620	+		CSW01_13690	0.10	+1.1
2,918,620	+		CSW01_13690	0.10	-1.8
2,918,643	-		CSW01_13690	0.12	-0.5
2,918,690	-		CSW01_13690	0.15	-2.1
2,918,700	+		CSW01_13690	0.16	-0.7
2,918,758	+		CSW01_13690	0.21	+1.8
2,918,770	+		CSW01_13690	0.21	-2.9
2,918,783	-		CSW01_13690	0.22	-1.3
2,918,829	+		CSW01_13690	0.26	-0.3
2,918,834	+		CSW01_13690	0.26	+1.4
2,918,837	-		CSW01_13690	0.27	+1.6
2,918,841	+		CSW01_13690	0.27	-3.7
2,918,871	-		CSW01_13690	0.29	+0.9
2,918,878	+		CSW01_13690	0.30	-2.8
2,918,888	+		CSW01_13690	0.30	-0.1
2,918,888	+		CSW01_13690	0.30	+1.3
2,918,888	+		CSW01_13690	0.30	+0.2
2,918,888	+		CSW01_13690	0.30	-0.1
2,918,888	+		CSW01_13690	0.30	+0.1
2,918,891	-		CSW01_13690	0.31	-1.1
2,918,896	-		CSW01_13690	0.31	-0.6
2,918,896	-		CSW01_13690	0.31	-2.5
2,918,896	-		CSW01_13690	0.31	+1.6
2,918,896	-		CSW01_13690	0.31	-0.2
2,918,896	-		CSW01_13690	0.31	+1.0
2,918,956	+		CSW01_13690	0.36	+0.2
2,918,956	+		CSW01_13690	0.36	-0.7
2,918,956	+		CSW01_13690	0.36	+1.0
2,918,957	+		CSW01_13690	0.36	+1.5
2,918,964	-		CSW01_13690	0.36	-0.8
2,919,018	+		CSW01_13690	0.40	-1.0
2,919,018	+		CSW01_13690	0.40	+0.2
2,919,023	+		CSW01_13690	0.41	+0.4
2,919,031	-		CSW01_13690	0.41	-2.4
2,919,075	+		CSW01_13690	0.45	+0.1
2,919,075	+		CSW01_13690	0.45	-0.6
2,919,075	+		CSW01_13690	0.45	-1.3
2,919,075	+		CSW01_13690	0.45	-1.9
2,919,075	+		CSW01_13690	0.45	-0.5
2,919,075	+		CSW01_13690	0.45	-0.4
2,919,083	-		CSW01_13690	0.45	+0.8
2,919,083	-		CSW01_13690	0.45	+2.3
2,919,083	-		CSW01_13690	0.45	-0.6
2,919,083	-		CSW01_13690	0.45	-0.8
2,919,083	-		CSW01_13690	0.45	-0.3
2,919,083	-		CSW01_13690	0.45	-0.4
2,919,083	-		CSW01_13690	0.45	-1.4
2,919,083	-		CSW01_13690	0.45	-3.4
2,919,083	-		CSW01_13690	0.45	-0.5
2,919,083	-		CSW01_13690	0.45	-0.1
2,919,083	-		CSW01_13690	0.45	+0.4
2,919,083	-		CSW01_13690	0.45	+0.2
2,919,083	-		CSW01_13690	0.45	+1.1
2,919,092	+		CSW01_13690	0.46	+0.7
2,919,092	+		CSW01_13690	0.46	+2.7
2,919,092	+		CSW01_13690	0.46	-0.8
2,919,109	+		CSW01_13690	0.47	+1.2
2,919,117	-		CSW01_13690	0.48	+1.9
2,919,215	-		CSW01_13690	0.55	+2.3
2,919,215	-		CSW01_13690	0.55	-1.1
2,919,216	-		CSW01_13690	0.55	-0.5
2,919,366	+		CSW01_13690	0.67	+2.4
2,919,430	+		CSW01_13690	0.72	+0.5
2,919,436	-		CSW01_13690	0.72	+1.1
2,919,438	-		CSW01_13690	0.72	-3.0
2,919,444	+		CSW01_13690	0.73	+1.6