Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_13200

Experiment: ICP1_phage_2.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep2
2,807,105	-		CSW01_13195	0.48	-0.0
2,807,133	-		CSW01_13195	0.49	+0.2
2,807,134	-		CSW01_13195	0.49	+0.4
2,807,158	+		CSW01_13195	0.51	+1.0
2,807,162	-		CSW01_13195	0.51	+1.0
2,807,178	+		CSW01_13195	0.52	+0.2
2,807,178	+		CSW01_13195	0.52	-0.4
2,807,178	+		CSW01_13195	0.52	-2.7
2,807,186	-		CSW01_13195	0.52	+1.1
2,807,186	-		CSW01_13195	0.52	-1.8
2,807,186	-		CSW01_13195	0.52	-0.2
2,807,186	-		CSW01_13195	0.52	+0.9
2,807,186	-		CSW01_13195	0.52	+0.7
2,807,208	+		CSW01_13195	0.53	+1.4
2,807,240	+		CSW01_13195	0.55	-4.5
2,807,330	-		CSW01_13195	0.60	-0.2
2,807,340	+		CSW01_13195	0.61	+1.1
2,807,349	-		CSW01_13195	0.61	+0.7
2,807,349	-		CSW01_13195	0.61	-3.4
2,807,381	+		CSW01_13195	0.63	-0.2
2,807,381	+		CSW01_13195	0.63	-2.7
2,807,381	+		CSW01_13195	0.63	+1.1
2,807,381	+		CSW01_13195	0.63	+0.6
2,807,381	+		CSW01_13195	0.63	-4.4
2,807,381	+		CSW01_13195	0.63	-3.6
2,807,389	-		CSW01_13195	0.63	-1.2
2,807,389	-		CSW01_13195	0.63	-0.3
2,807,389	-		CSW01_13195	0.63	+1.8
2,807,389	-		CSW01_13195	0.63	-0.1
2,807,417	+		CSW01_13195	0.65	-1.7
2,807,425	-		CSW01_13195	0.65	-1.3
2,807,425	-		CSW01_13195	0.65	-2.0
2,807,450	-		CSW01_13195	0.67	+1.6
2,807,450	-		CSW01_13195	0.67	-0.4
2,807,500	-		CSW01_13195	0.69	-2.6
2,807,525	-		CSW01_13195	0.71	+0.8
2,807,556	-		CSW01_13195	0.73	-1.4
2,807,566	+		CSW01_13195	0.73	-1.9
2,807,574	+		CSW01_13195	0.74	+0.8
2,807,620	+		CSW01_13195	0.76	-3.5
2,807,620	+		CSW01_13195	0.76	+1.7
2,807,628	-		CSW01_13195	0.77	-1.1
2,807,628	-		CSW01_13195	0.77	+0.2
2,807,635	+		CSW01_13195	0.77	-0.0
2,807,635	-		CSW01_13195	0.77	+1.3
2,807,635	-		CSW01_13195	0.77	+0.1
2,807,677	+		CSW01_13195	0.79	+0.6
2,807,677	+		CSW01_13195	0.79	+0.2
2,807,685	-		CSW01_13195	0.80	-0.7
2,807,698	-		CSW01_13195	0.80	+0.8
2,807,738	-		CSW01_13195	0.83	+0.5
2,807,758	-		CSW01_13195	0.84	-1.4
2,807,779	-		CSW01_13195	0.85	+0.2
2,807,821	+		CSW01_13195	0.87	-2.3
2,807,821	+		CSW01_13195	0.87	-0.8
2,807,821	+		CSW01_13195	0.87	-4.0
2,807,821	+		CSW01_13195	0.87	+1.4
2,807,821	+		CSW01_13195	0.87	-1.3
2,807,821	+		CSW01_13195	0.87	+0.9
2,807,829	-		CSW01_13195	0.88	-1.7
2,807,829	-		CSW01_13195	0.88	-0.4
2,807,829	-		CSW01_13195	0.88	+0.2
2,807,843	+		CSW01_13195	0.89	-0.2
2,807,849	+		CSW01_13195	0.89	-0.5
2,807,853	+		CSW01_13195	0.89	-1.0
2,807,879	+				+0.3
2,807,879	+				+1.7
2,807,879	+				+1.4
2,807,879	+				+0.9
2,807,879	+				+1.0
2,807,887	-				-0.3
2,807,887	-				+0.9
2,807,916	-				-1.7
2,807,954	+				-3.6
2,807,954	+				-1.1
2,807,954	+				-0.6
2,807,954	+				-2.5
2,807,954	+				-0.8
2,807,954	+				+0.6
2,807,954	+				-2.4
2,807,954	+				+2.3
2,807,954	+				-2.0
2,807,954	+				+0.8
2,807,954	+				+1.2
2,807,962	-				+0.8
2,807,962	-				+0.1
2,807,962	-				+1.9
2,807,962	-				+1.2
2,807,962	-				-0.2
2,807,962	-				-1.2
2,807,962	-				-3.3
2,807,962	-				+0.1
2,807,962	-				+1.2
2,807,962	-				+1.3
2,807,962	-				-0.4
2,807,971	+				-0.1
2,807,971	+				+0.8
2,807,978	+				-0.9
2,807,978	+				-3.6
2,807,979	-				+0.7
2,807,979	-				-1.1
2,807,985	-				-3.1
2,807,986	-				-0.5
2,807,986	-				+0.7
2,807,986	-				+2.8
2,807,995	-				-0.0
2,808,043	-				-1.4
2,808,056	+				+0.7
2,808,085	-				+0.2
2,808,117	+		CSW01_13200	0.15	+0.6
2,808,117	+		CSW01_13200	0.15	+0.2
2,808,117	+		CSW01_13200	0.15	-1.5
2,808,117	+		CSW01_13200	0.15	-0.2
2,808,117	+		CSW01_13200	0.15	+0.5
2,808,119	+		CSW01_13200	0.15	-0.4
2,808,139	+		CSW01_13200	0.18	+1.6
2,808,144	+		CSW01_13200	0.19	-2.5
2,808,158	+		CSW01_13200	0.22	-0.4
2,808,229	+		CSW01_13200	0.34	+1.9
2,808,229	-		CSW01_13200	0.34	-1.0
2,808,230	+		CSW01_13200	0.34	-1.4
2,808,231	+		CSW01_13200	0.34	+1.3
2,808,275	+		CSW01_13200	0.41	-1.4
2,808,293	-		CSW01_13200	0.45	-0.7
2,808,324	+		CSW01_13200	0.50	+0.8
2,808,324	+		CSW01_13200	0.50	-2.9
2,808,332	-		CSW01_13200	0.51	+1.6
2,808,368	-		CSW01_13200	0.57	-1.7
2,808,373	+		CSW01_13200	0.58	-0.5
2,808,378	+		CSW01_13200	0.59	+0.1
2,808,381	-		CSW01_13200	0.59	-0.1
2,808,386	-		CSW01_13200	0.60	-0.5
2,808,437	+		CSW01_13200	0.69	-0.9
2,808,467	+		CSW01_13200	0.74	+1.0
2,808,475	+		CSW01_13200	0.75	-1.9
2,808,475	+		CSW01_13200	0.75	-3.1
2,808,553	+		CSW01_13200	0.88	-1.3
2,808,553	+		CSW01_13200	0.88	+0.3
2,808,556	-		CSW01_13200	0.89	-3.8
2,808,576	-				-3.9
2,808,596	+				+0.5
2,808,612	+				+0.8
2,808,630	-				-2.7
2,808,630	-				-4.2
2,808,881	+				+0.4
2,808,889	-				-1.5
2,808,889	-				+1.2
2,808,889	-				-0.8
2,808,889	-				-1.3
2,808,889	-				+1.1
2,808,889	-				-2.9
2,808,898	+				+1.5
2,808,931	+				-2.1
2,808,936	+		CSW01_13205	0.10	+0.8
2,808,941	+		CSW01_13205	0.10	+0.0
2,808,941	+		CSW01_13205	0.10	+1.0
2,808,941	+		CSW01_13205	0.10	+2.4
2,808,941	+		CSW01_13205	0.10	-0.1
2,808,941	+		CSW01_13205	0.10	+0.5
2,808,941	+		CSW01_13205	0.10	-2.4
2,808,941	+		CSW01_13205	0.10	-0.4
2,808,941	+		CSW01_13205	0.10	+0.6
2,808,941	+		CSW01_13205	0.10	+0.7
2,808,941	+		CSW01_13205	0.10	-0.1
2,808,946	+		CSW01_13205	0.11	-2.1
2,808,946	+		CSW01_13205	0.11	-0.2
2,808,949	-		CSW01_13205	0.11	-2.0
2,808,949	-		CSW01_13205	0.11	+0.8
2,808,949	-		CSW01_13205	0.11	+0.6
2,808,949	-		CSW01_13205	0.11	-3.5
2,808,949	-		CSW01_13205	0.11	-2.8
2,808,969	-		CSW01_13205	0.12	-0.3
2,808,971	+		CSW01_13205	0.12	-0.5
2,808,981	+		CSW01_13205	0.12	+0.1
2,808,989	-		CSW01_13205	0.13	-2.0
2,808,989	-		CSW01_13205	0.13	-0.3
2,808,989	-		CSW01_13205	0.13	+0.7
2,809,053	+		CSW01_13205	0.16	-1.5
2,809,063	+		CSW01_13205	0.17	-2.6
2,809,071	-		CSW01_13205	0.17	+1.5
2,809,071	-		CSW01_13205	0.17	+0.6
2,809,071	-		CSW01_13205	0.17	+1.0
2,809,129	+		CSW01_13205	0.20	+0.8
2,809,129	+		CSW01_13205	0.20	+0.7
2,809,129	+		CSW01_13205	0.20	-0.1
2,809,129	+		CSW01_13205	0.20	+1.5
2,809,137	-		CSW01_13205	0.21	+1.1
2,809,137	-		CSW01_13205	0.21	-0.1
2,809,137	-		CSW01_13205	0.21	+0.4
2,809,137	-		CSW01_13205	0.21	-1.2
2,809,147	+		CSW01_13205	0.21	-0.4
2,809,154	-		CSW01_13205	0.21	-4.7
2,809,155	-		CSW01_13205	0.21	-0.2
2,809,182	-		CSW01_13205	0.23	+1.1
2,809,182	-		CSW01_13205	0.23	-0.0
2,809,182	-		CSW01_13205	0.23	-1.9
2,809,212	+		CSW01_13205	0.24	-0.1
2,809,212	+		CSW01_13205	0.24	+0.9
2,809,220	-		CSW01_13205	0.25	-0.7
2,809,220	-		CSW01_13205	0.25	-2.9
2,809,248	+		CSW01_13205	0.26	-0.9
2,809,298	+		CSW01_13205	0.29	+0.4
2,809,311	-		CSW01_13205	0.30	-1.1
2,809,322	+		CSW01_13205	0.30	+1.0
2,809,340	+		CSW01_13205	0.31	-0.1
2,809,450	-		CSW01_13205	0.37	-1.1
2,809,483	-		CSW01_13205	0.39	-2.5
2,809,523	+		CSW01_13205	0.41	+0.8
2,809,525	+		CSW01_13205	0.41	-4.1
2,809,563	+		CSW01_13205	0.43	+1.0
2,809,569	+		CSW01_13205	0.43	+0.8
2,809,595	-		CSW01_13205	0.44	-0.2