Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_12410

Experiment: ICP1_phage_2.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep2
2,663,524	-		CSW01_12405	0.58	+1.2
2,663,598	-		CSW01_12405	0.61	+0.4
2,663,689	+		CSW01_12405	0.65	+0.0
2,663,697	-		CSW01_12405	0.66	-3.6
2,663,757	-		CSW01_12405	0.68	+0.7
2,663,825	+		CSW01_12405	0.71	+1.0
2,663,825	+		CSW01_12405	0.71	-1.0
2,663,825	+		CSW01_12405	0.71	-3.2
2,663,825	+		CSW01_12405	0.71	-0.1
2,663,825	+		CSW01_12405	0.71	-0.9
2,663,825	+		CSW01_12405	0.71	-3.2
2,663,833	-		CSW01_12405	0.72	-2.1
2,663,833	-		CSW01_12405	0.72	-2.5
2,663,833	-		CSW01_12405	0.72	+0.9
2,663,833	-		CSW01_12405	0.72	-1.1
2,663,833	-		CSW01_12405	0.72	+0.9
2,663,833	-		CSW01_12405	0.72	+2.0
2,663,833	-		CSW01_12405	0.72	-2.4
2,663,833	-		CSW01_12405	0.72	+1.9
2,663,833	-		CSW01_12405	0.72	-3.1
2,663,833	-		CSW01_12405	0.72	-0.0
2,663,833	-		CSW01_12405	0.72	-1.3
2,663,862	+		CSW01_12405	0.73	+0.1
2,663,870	-		CSW01_12405	0.73	-1.3
2,663,883	-		CSW01_12405	0.74	+0.7
2,663,890	+		CSW01_12405	0.74	-0.9
2,663,893	-		CSW01_12405	0.74	+0.5
2,663,893	-		CSW01_12405	0.74	-0.5
2,663,907	-		CSW01_12405	0.75	+0.1
2,663,922	-		CSW01_12405	0.76	-1.2
2,663,922	-		CSW01_12405	0.76	+0.4
2,663,931	+		CSW01_12405	0.76	-2.6
2,663,931	+		CSW01_12405	0.76	+1.1
2,663,931	+		CSW01_12405	0.76	-0.7
2,663,939	-		CSW01_12405	0.77	-4.3
2,663,939	-		CSW01_12405	0.77	+0.0
2,663,941	-		CSW01_12405	0.77	+2.6
2,663,957	-		CSW01_12405	0.77	-0.2
2,663,962	-		CSW01_12405	0.78	-1.0
2,663,984	+		CSW01_12405	0.79	-2.0
2,663,994	-		CSW01_12405	0.79	+0.3
2,664,044	+		CSW01_12405	0.81	-2.6
2,664,087	+		CSW01_12405	0.83	-2.8
2,664,108	-		CSW01_12405	0.84	-1.8
2,664,128	+		CSW01_12405	0.85	+0.7
2,664,140	+		CSW01_12405	0.86	+1.9
2,664,153	-		CSW01_12405	0.86	+0.0
2,664,153	-		CSW01_12405	0.86	+0.5
2,664,153	-		CSW01_12405	0.86	+0.0
2,664,155	-		CSW01_12405	0.86	+0.5
2,664,179	-		CSW01_12405	0.87	-1.5
2,664,181	-		CSW01_12405	0.87	-1.0
2,664,187	+		CSW01_12405	0.88	+1.4
2,664,289	+				-0.0
2,664,289	+				+0.2
2,664,297	-				+0.6
2,664,297	-				-0.1
2,664,297	-				+0.3
2,664,297	-				-0.7
2,664,297	-				+1.7
2,664,299	+				-2.1
2,664,299	+				-1.7
2,664,299	+				+1.4
2,664,299	+				+0.5
2,664,299	+				+0.3
2,664,305	-				-0.1
2,664,307	-				-2.0
2,664,307	-				-1.1
2,664,307	-				+0.5
2,664,348	-				-1.0
2,664,425	-				-1.0
2,664,427	+				-2.7
2,664,435	-				+0.6
2,664,435	-				+2.1
2,664,435	-				+0.1
2,664,435	-				-1.8
2,664,503	+				-0.3
2,664,505	+				-0.1
2,664,511	-				+1.6
2,664,624	+				+0.7
2,664,632	-				-0.1
2,664,632	-				-2.7
2,664,633	+				-0.0
2,664,652	+				-2.0
2,664,652	+				-0.1
2,664,652	+				-2.0
2,664,652	+				-0.3
2,664,658	+		CSW01_12410	0.10	-0.5
2,664,660	-		CSW01_12410	0.10	-0.4
2,664,660	-		CSW01_12410	0.10	-0.3
2,664,660	-		CSW01_12410	0.10	+0.2
2,664,660	-		CSW01_12410	0.10	-0.4
2,664,660	-		CSW01_12410	0.10	-1.3
2,664,660	-		CSW01_12410	0.10	-1.5
2,664,660	-		CSW01_12410	0.10	+0.3
2,664,660	-		CSW01_12410	0.10	-0.5
2,664,703	+		CSW01_12410	0.14	-0.0
2,664,767	+		CSW01_12410	0.19	-0.9
2,664,767	+		CSW01_12410	0.19	-2.1
2,664,777	+		CSW01_12410	0.19	-2.4
2,664,788	-		CSW01_12410	0.20	-1.9
2,664,788	-		CSW01_12410	0.20	+0.2
2,664,831	+		CSW01_12410	0.23	-2.2
2,664,855	+		CSW01_12410	0.25	+0.3
2,664,863	-		CSW01_12410	0.26	+1.6
2,664,869	+		CSW01_12410	0.26	-0.3
2,664,869	+		CSW01_12410	0.26	-2.2
2,664,875	-		CSW01_12410	0.27	+2.0
2,664,885	-		CSW01_12410	0.27	+0.1
2,664,886	-		CSW01_12410	0.28	+0.4
2,664,893	-		CSW01_12410	0.28	-3.0
2,664,904	+		CSW01_12410	0.29	+0.0
2,664,910	+		CSW01_12410	0.29	+0.1
2,664,912	-		CSW01_12410	0.29	-1.8
2,664,945	-		CSW01_12410	0.32	-1.2
2,664,945	-		CSW01_12410	0.32	+0.3
2,664,947	+		CSW01_12410	0.32	-3.9
2,664,974	+		CSW01_12410	0.34	-1.0
2,664,974	+		CSW01_12410	0.34	+0.6
2,664,974	+		CSW01_12410	0.34	-0.3
2,664,982	-		CSW01_12410	0.35	+0.4
2,664,982	-		CSW01_12410	0.35	+0.4
2,664,993	+		CSW01_12410	0.36	-1.5
2,665,000	+		CSW01_12410	0.36	+0.6
2,665,013	-		CSW01_12410	0.37	+1.3
2,665,021	+		CSW01_12410	0.38	+0.3
2,665,080	+		CSW01_12410	0.42	-2.2
2,665,088	-		CSW01_12410	0.43	+0.4
2,665,130	+		CSW01_12410	0.46	+1.3
2,665,138	-		CSW01_12410	0.47	-0.2
2,665,165	+		CSW01_12410	0.49	-0.3
2,665,173	+		CSW01_12410	0.49	-2.3
2,665,181	-		CSW01_12410	0.50	-1.9
2,665,227	+		CSW01_12410	0.53	+0.7
2,665,275	-		CSW01_12410	0.57	+0.1
2,665,275	-		CSW01_12410	0.57	+0.2
2,665,416	+		CSW01_12410	0.68	+1.5
2,665,421	+		CSW01_12410	0.68	+2.3
2,665,459	+		CSW01_12410	0.71	+1.3
2,665,478	+		CSW01_12410	0.72	-0.2
2,665,478	+		CSW01_12410	0.72	-0.4
2,665,478	+		CSW01_12410	0.72	+0.1
2,665,478	+		CSW01_12410	0.72	-2.1
2,665,478	+		CSW01_12410	0.72	+1.0
2,665,485	+		CSW01_12410	0.73	+0.3
2,665,486	-		CSW01_12410	0.73	-0.9
2,665,486	-		CSW01_12410	0.73	+0.1
2,665,486	-		CSW01_12410	0.73	-0.4
2,665,486	-		CSW01_12410	0.73	-3.0
2,665,486	-		CSW01_12410	0.73	-0.9
2,665,486	-		CSW01_12410	0.73	+0.3
2,665,491	-		CSW01_12410	0.73	+0.5
2,665,493	-		CSW01_12410	0.73	+0.2
2,665,514	+		CSW01_12410	0.75	-0.8
2,665,523	-		CSW01_12410	0.76	+0.3
2,665,539	+		CSW01_12410	0.77	+1.8
2,665,636	+		CSW01_12410	0.84	-1.8
2,665,668	-		CSW01_12410	0.87	-2.4
2,665,670	+		CSW01_12410	0.87	+0.1
2,665,775	+				-1.5
2,665,783	-				-1.1
2,665,802	+				+2.0
2,665,838	+				+0.0
2,665,848	-				+1.5
2,665,850	+				+0.1
2,665,850	+				+0.1
2,665,852	+				+1.6
2,665,858	-				-4.5
2,665,858	-				-0.3
2,665,897	-				-1.8
2,665,899	+				-2.4
2,665,931	+				-1.3
2,665,997	+				+0.2
2,666,013	+				-2.6
2,666,057	+				+0.8
2,666,141	+				-3.5
2,666,236	+				-0.4
2,666,311	-		CSW01_12415	0.11	-2.3
2,666,354	+		CSW01_12415	0.12	-0.8
2,666,447	-		CSW01_12415	0.15	-3.3
2,666,488	-		CSW01_12415	0.17	-1.6
2,666,518	+		CSW01_12415	0.18	+0.9
2,666,550	+		CSW01_12415	0.19	-1.6
2,666,550	+		CSW01_12415	0.19	+0.5
2,666,550	+		CSW01_12415	0.19	-1.1
2,666,668	+		CSW01_12415	0.23	-2.0
2,666,694	+		CSW01_12415	0.24	-1.3
2,666,812	+		CSW01_12415	0.29	-0.1
2,666,812	+		CSW01_12415	0.29	-2.9
2,666,820	-		CSW01_12415	0.29	-3.3
2,666,820	-		CSW01_12415	0.29	+0.3
2,666,820	-		CSW01_12415	0.29	-1.3
2,666,820	-		CSW01_12415	0.29	-0.7
2,666,820	-		CSW01_12415	0.29	-3.6