Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11975

Experiment: ICP1_phage_2.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep2
2,550,259	+				+1.5
2,550,280	-				-0.0
2,550,334	-				-0.7
2,550,371	+		CSW01_11970	0.10	+0.4
2,550,379	-		CSW01_11970	0.11	-1.7
2,550,410	+		CSW01_11970	0.14	-4.2
2,550,473	-		CSW01_11970	0.21	+1.1
2,550,489	+		CSW01_11970	0.23	-3.0
2,550,520	-		CSW01_11970	0.26	-3.6
2,550,673	+		CSW01_11970	0.42	+1.1
2,550,703	+		CSW01_11970	0.45	-2.4
2,550,742	+		CSW01_11970	0.49	-1.0
2,550,762	-		CSW01_11970	0.51	+0.5
2,550,781	-		CSW01_11970	0.53	+0.1
2,550,781	-		CSW01_11970	0.53	+0.1
2,550,887	+		CSW01_11970	0.64	-0.5
2,550,887	+		CSW01_11970	0.64	-0.4
2,550,895	-		CSW01_11970	0.65	-0.2
2,551,012	-		CSW01_11970	0.77	-0.6
2,551,020	+		CSW01_11970	0.78	+0.6
2,551,020	-		CSW01_11970	0.78	-1.2
2,551,146	+				-1.9
2,551,163	+				-1.0
2,551,169	-				+0.9
2,551,171	+				+0.7
2,551,171	+				+1.0
2,551,179	-				+0.1
2,551,214	-				-3.2
2,551,224	-				-0.2
2,551,319	-				+0.2
2,551,489	+				-1.0
2,551,496	+		CSW01_11975	0.10	-3.1
2,551,509	-		CSW01_11975	0.11	+0.4
2,551,558	+		CSW01_11975	0.13	-1.1
2,551,558	+		CSW01_11975	0.13	-2.8
2,551,558	-		CSW01_11975	0.13	-3.4
2,551,558	-		CSW01_11975	0.13	-2.3
2,551,560	+		CSW01_11975	0.13	-1.0
2,551,560	+		CSW01_11975	0.13	+0.7
2,551,560	+		CSW01_11975	0.13	-1.3
2,551,560	+		CSW01_11975	0.13	+3.3
2,551,560	+		CSW01_11975	0.13	+1.7
2,551,560	+		CSW01_11975	0.13	-0.7
2,551,560	+		CSW01_11975	0.13	+1.3
2,551,566	-		CSW01_11975	0.13	-0.4
2,551,566	-		CSW01_11975	0.13	-0.2
2,551,568	-		CSW01_11975	0.13	-4.1
2,551,570	+		CSW01_11975	0.13	-4.9
2,551,623	+		CSW01_11975	0.15	+1.9
2,551,631	-		CSW01_11975	0.16	+0.8
2,551,631	-		CSW01_11975	0.16	+2.1
2,551,683	-		CSW01_11975	0.18	+0.9
2,551,753	+		CSW01_11975	0.20	+0.9
2,551,754	+		CSW01_11975	0.21	+0.1
2,551,754	+		CSW01_11975	0.21	-0.2
2,551,762	-		CSW01_11975	0.21	+0.3
2,551,867	+		CSW01_11975	0.25	+0.3
2,551,867	+		CSW01_11975	0.25	-1.3
2,551,875	-		CSW01_11975	0.25	+0.9
2,551,875	-		CSW01_11975	0.25	-1.8
2,551,875	-		CSW01_11975	0.25	+0.6
2,551,925	+		CSW01_11975	0.27	-0.3
2,551,925	+		CSW01_11975	0.27	+0.1
2,551,943	-		CSW01_11975	0.28	+2.0
2,552,071	-		CSW01_11975	0.33	-2.2
2,552,085	+		CSW01_11975	0.34	-2.4
2,552,131	+		CSW01_11975	0.36	+0.6
2,552,164	+		CSW01_11975	0.37	-2.5
2,552,186	+		CSW01_11975	0.38	-0.4
2,552,194	-		CSW01_11975	0.38	-1.6
2,552,194	-		CSW01_11975	0.38	-3.9
2,552,194	-		CSW01_11975	0.38	+0.6
2,552,194	-		CSW01_11975	0.38	+2.6
2,552,408	-		CSW01_11975	0.47	+0.3
2,552,410	+		CSW01_11975	0.47	-2.6
2,552,410	+		CSW01_11975	0.47	-3.3
2,552,410	+		CSW01_11975	0.47	+0.5
2,552,418	-		CSW01_11975	0.48	-3.2
2,552,442	-		CSW01_11975	0.48	+1.7
2,552,469	+		CSW01_11975	0.50	+1.3
2,552,571	+		CSW01_11975	0.54	-1.6
2,552,606	+		CSW01_11975	0.55	-2.3
2,552,606	+		CSW01_11975	0.55	-0.0
2,552,606	+		CSW01_11975	0.55	-0.6
2,552,606	+		CSW01_11975	0.55	+0.7
2,552,614	-		CSW01_11975	0.55	-1.3
2,552,614	-		CSW01_11975	0.55	+0.1
2,552,614	-		CSW01_11975	0.55	-0.1
2,552,614	-		CSW01_11975	0.55	+2.0
2,552,614	-		CSW01_11975	0.55	+0.6
2,552,614	-		CSW01_11975	0.55	+0.5
2,552,682	-		CSW01_11975	0.58	-0.8
2,552,787	-		CSW01_11975	0.63	+0.3
2,552,815	+		CSW01_11975	0.64	+1.3
2,552,815	+		CSW01_11975	0.64	-0.6
2,552,847	+		CSW01_11975	0.65	+1.3
2,553,007	+		CSW01_11975	0.71	+0.9
2,553,080	+		CSW01_11975	0.74	+0.4
2,553,099	+		CSW01_11975	0.75	-3.0
2,553,099	+		CSW01_11975	0.75	+1.6
2,553,099	+		CSW01_11975	0.75	+1.4
2,553,099	+		CSW01_11975	0.75	+0.6
2,553,099	+		CSW01_11975	0.75	-0.8
2,553,099	+		CSW01_11975	0.75	+0.2
2,553,099	+		CSW01_11975	0.75	+1.4
2,553,099	+		CSW01_11975	0.75	+0.9
2,553,099	+		CSW01_11975	0.75	-1.2
2,553,099	+		CSW01_11975	0.75	-2.1
2,553,099	+		CSW01_11975	0.75	-2.1
2,553,099	+		CSW01_11975	0.75	+1.5
2,553,099	+		CSW01_11975	0.75	-0.8
2,553,099	+		CSW01_11975	0.75	+0.2
2,553,107	-		CSW01_11975	0.76	+1.9
2,553,107	-		CSW01_11975	0.76	+1.5
2,553,107	-		CSW01_11975	0.76	-0.3
2,553,107	-		CSW01_11975	0.76	-0.3
2,553,113	+		CSW01_11975	0.76	+1.4
2,553,113	+		CSW01_11975	0.76	-1.2
2,553,121	-		CSW01_11975	0.76	-1.1
2,553,121	-		CSW01_11975	0.76	+1.2
2,553,121	-		CSW01_11975	0.76	+0.4
2,553,121	-		CSW01_11975	0.76	+0.7
2,553,152	+		CSW01_11975	0.77	+4.0
2,553,160	-		CSW01_11975	0.78	+0.4
2,553,284	+		CSW01_11975	0.83	-1.5
2,553,284	+		CSW01_11975	0.83	-0.6
2,553,292	-		CSW01_11975	0.83	+0.8
2,553,292	-		CSW01_11975	0.83	+0.5
2,553,340	-		CSW01_11975	0.85	+1.3
2,553,381	+		CSW01_11975	0.87	+1.2
2,553,381	+		CSW01_11975	0.87	+0.7
2,553,389	-		CSW01_11975	0.87	+1.7
2,553,389	-		CSW01_11975	0.87	+0.7
2,553,389	-		CSW01_11975	0.87	+0.9
2,553,389	-		CSW01_11975	0.87	-2.5
2,553,422	+		CSW01_11975	0.88	-0.1
2,553,429	-		CSW01_11975	0.89	+0.7
2,553,443	+		CSW01_11975	0.89	-0.9
2,553,443	+		CSW01_11975	0.89	-1.8
2,553,498	-				-1.8
2,553,513	-				-0.4
2,553,599	-				-0.8
2,553,606	-				-2.4
2,553,608	-				+0.2
2,553,614	+				+0.1
2,553,648	-				+0.5
2,553,702	-				-1.2
2,553,992	-				+0.4
2,554,013	-				-0.2
2,554,100	-				-1.8
2,554,100	-				-0.1
2,554,100	-				+1.5
2,554,205	-				-1.4
2,554,329	+		CSW01_11985	0.15	-0.2
2,554,329	+		CSW01_11985	0.15	+1.3
2,554,329	+		CSW01_11985	0.15	-0.2
2,554,337	-		CSW01_11985	0.17	+0.8
2,554,339	+		CSW01_11985	0.17	-2.4
2,554,342	-		CSW01_11985	0.18	-0.2
2,554,342	-		CSW01_11985	0.18	-0.1
2,554,346	+		CSW01_11985	0.19	-5.2
2,554,347	-		CSW01_11985	0.19	-0.4
2,554,360	+		CSW01_11985	0.22	+0.1
2,554,360	+		CSW01_11985	0.22	-0.3
2,554,360	+		CSW01_11985	0.22	+0.7
2,554,429	+		CSW01_11985	0.36	-1.0
2,554,464	+		CSW01_11985	0.43	+0.8
2,554,474	+		CSW01_11985	0.45	+0.3
2,554,482	-		CSW01_11985	0.47	+0.4
2,554,509	+		CSW01_11985	0.52	+2.0
2,554,514	+		CSW01_11985	0.53	+1.0
2,554,519	+		CSW01_11985	0.54	-1.0
2,554,526	-		CSW01_11985	0.56	-1.3
2,554,526	-		CSW01_11985	0.56	+0.4
2,554,527	-		CSW01_11985	0.56	+0.2
2,554,527	-		CSW01_11985	0.56	+1.1
2,554,527	-		CSW01_11985	0.56	+0.4
2,554,527	-		CSW01_11985	0.56	-1.1
2,554,644	+		CSW01_11985	0.80	+1.7
2,554,644	+		CSW01_11985	0.80	-0.1
2,554,706	+				+0.7