Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_11885

Experiment: ICP1_phage_2.3_MOI_rep2

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	ICP1_phage_2.3_MOI_rep2
2,532,255	+		CSW01_11875	0.68	-0.5
2,532,295	-		CSW01_11875	0.70	-0.8
2,532,300	-		CSW01_11875	0.70	+0.3
2,532,300	-		CSW01_11875	0.70	+0.8
2,532,307	+		CSW01_11875	0.70	+1.3
2,532,371	+		CSW01_11875	0.73	+2.7
2,532,431	+		CSW01_11875	0.76	-0.4
2,532,431	+		CSW01_11875	0.76	-0.3
2,532,431	+		CSW01_11875	0.76	-1.5
2,532,431	+		CSW01_11875	0.76	-2.7
2,532,431	+		CSW01_11875	0.76	+0.6
2,532,439	-		CSW01_11875	0.76	-2.2
2,532,439	-		CSW01_11875	0.76	-0.2
2,532,439	-		CSW01_11875	0.76	+0.1
2,532,439	-		CSW01_11875	0.76	-2.7
2,532,502	-		CSW01_11875	0.79	+0.7
2,532,538	-		CSW01_11875	0.80	-3.8
2,532,543	-		CSW01_11875	0.81	+0.9
2,532,552	-		CSW01_11875	0.81	-3.7
2,532,586	+		CSW01_11875	0.82	-0.6
2,532,613	-		CSW01_11875	0.84	-1.2
2,532,673	+		CSW01_11875	0.86	-0.7
2,532,673	+		CSW01_11875	0.86	-1.7
2,532,681	-		CSW01_11875	0.86	+1.6
2,532,681	-		CSW01_11875	0.86	-0.1
2,532,681	-		CSW01_11875	0.86	+0.1
2,532,689	-		CSW01_11875	0.87	+1.4
2,532,689	-		CSW01_11875	0.87	-0.5
2,532,691	-		CSW01_11875	0.87	+1.6
2,532,767	+				+0.2
2,532,767	+				-3.0
2,532,786	+				-2.9
2,532,823	+				-2.3
2,532,826	+				+0.8
2,532,828	+				+0.5
2,532,828	+				-0.1
2,532,831	-				+0.5
2,532,892	+				+2.1
2,532,900	-				-0.1
2,532,900	-				-2.9
2,532,966	-				+0.6
2,532,972	+				-0.7
2,532,972	+				+0.2
2,532,980	-				+0.2
2,532,980	-				+0.4
2,532,990	-				+1.0
2,532,995	-				-3.5
2,533,019	-		CSW01_11880	0.31	-3.9
2,533,130	+		CSW01_11880	0.89	-1.4
2,533,137	-				+1.4
2,533,138	-				+0.2
2,533,138	-				-0.4
2,533,154	-				+0.7
2,533,201	+				-2.7
2,533,209	-				-1.1
2,533,209	-				-2.5
2,533,209	-				-0.1
2,533,280	-				-0.4
2,533,280	-				+0.1
2,533,309	+		CSW01_11885	0.11	-1.2
2,533,391	+		CSW01_11885	0.19	-0.2
2,533,435	-		CSW01_11885	0.24	-2.9
2,533,492	-		CSW01_11885	0.29	+0.6
2,533,492	-		CSW01_11885	0.29	-3.4
2,533,519	+		CSW01_11885	0.32	+0.4
2,533,519	+		CSW01_11885	0.32	-0.1
2,533,519	+		CSW01_11885	0.32	-3.9
2,533,519	+		CSW01_11885	0.32	+0.3
2,533,519	+		CSW01_11885	0.32	+0.6
2,533,519	+		CSW01_11885	0.32	+0.4
2,533,519	+		CSW01_11885	0.32	+0.4
2,533,519	+		CSW01_11885	0.32	+2.3
2,533,519	+		CSW01_11885	0.32	-2.7
2,533,527	-		CSW01_11885	0.33	-1.0
2,533,527	-		CSW01_11885	0.33	+1.2
2,533,527	-		CSW01_11885	0.33	+0.8
2,533,527	-		CSW01_11885	0.33	-2.7
2,533,527	-		CSW01_11885	0.33	-3.5
2,533,527	-		CSW01_11885	0.33	-3.3
2,533,527	-		CSW01_11885	0.33	-0.9
2,533,527	-		CSW01_11885	0.33	-0.5
2,533,529	+		CSW01_11885	0.33	+1.1
2,533,529	+		CSW01_11885	0.33	+0.3
2,533,529	+		CSW01_11885	0.33	-1.3
2,533,529	-		CSW01_11885	0.33	-1.7
2,533,537	-		CSW01_11885	0.34	+0.5
2,533,540	+		CSW01_11885	0.34	-1.1
2,533,548	-		CSW01_11885	0.35	+0.4
2,533,562	+		CSW01_11885	0.36	+1.2
2,533,582	-		CSW01_11885	0.38	-3.4
2,533,612	+		CSW01_11885	0.41	+0.1
2,533,662	+		CSW01_11885	0.47	+0.8
2,533,707	-		CSW01_11885	0.51	+1.1
2,533,707	-		CSW01_11885	0.51	-0.4
2,533,723	+		CSW01_11885	0.53	+0.8
2,533,731	-		CSW01_11885	0.53	+0.4
2,533,738	+		CSW01_11885	0.54	+1.5
2,533,753	-		CSW01_11885	0.56	-0.1
2,533,757	-		CSW01_11885	0.56	+1.8
2,533,889	-		CSW01_11885	0.70	-3.3
2,533,899	-		CSW01_11885	0.71	+0.8
2,533,940	+		CSW01_11885	0.75	+1.2
2,533,941	-		CSW01_11885	0.75	+0.3
2,533,947	+		CSW01_11885	0.75	+0.9
2,533,997	+		CSW01_11885	0.80	-0.8
2,534,075	+		CSW01_11885	0.88	-1.9
2,534,206	+				+1.0
2,534,206	+				+0.9
2,534,206	+				-1.6
2,534,206	+				+0.7
2,534,214	-				-1.7
2,534,214	-				-0.9
2,534,220	-				+0.7
2,534,281	-				+1.1
2,534,375	-		CSW01_11890	0.14	-1.4
2,534,449	-		CSW01_11890	0.26	+2.2
2,534,470	-		CSW01_11890	0.29	-1.0
2,534,541	+		CSW01_11890	0.41	-1.0
2,534,564	+		CSW01_11890	0.45	+2.0
2,534,564	-		CSW01_11890	0.45	+0.7
2,534,601	-		CSW01_11890	0.50	+1.0
2,534,616	+		CSW01_11890	0.53	+0.1
2,534,616	+		CSW01_11890	0.53	+0.5
2,534,616	+		CSW01_11890	0.53	-0.0
2,534,622	+		CSW01_11890	0.54	+0.1
2,534,622	+		CSW01_11890	0.54	-0.6
2,534,624	-		CSW01_11890	0.54	-0.5
2,534,624	-		CSW01_11890	0.54	-2.1
2,534,630	-		CSW01_11890	0.55	-0.3
2,534,630	-		CSW01_11890	0.55	+1.2
2,534,630	-		CSW01_11890	0.55	+1.4
2,534,632	+		CSW01_11890	0.55	+1.1
2,534,634	+		CSW01_11890	0.56	+0.7
2,534,634	+		CSW01_11890	0.56	-0.1
2,534,634	+		CSW01_11890	0.56	+0.3
2,534,634	+		CSW01_11890	0.56	-1.0
2,534,634	+		CSW01_11890	0.56	-2.2
2,534,642	-		CSW01_11890	0.57	+0.6
2,534,642	-		CSW01_11890	0.57	+0.8
2,534,642	-		CSW01_11890	0.57	-0.3
2,534,642	-		CSW01_11890	0.57	-1.6
2,534,642	-		CSW01_11890	0.57	-1.6
2,534,704	+		CSW01_11890	0.67	+0.5
2,534,793	+		CSW01_11890	0.81	+0.3
2,534,793	+		CSW01_11890	0.81	+2.7
2,534,870	-				-0.2
2,534,871	-				+0.5
2,534,894	+				+0.1
2,534,908	+				+1.8
2,534,975	+				-0.6
2,534,975	+				-1.7
2,535,066	+		CSW01_11895	0.11	+0.1
2,535,066	+		CSW01_11895	0.11	+0.9
2,535,066	+		CSW01_11895	0.11	+1.0
2,535,066	+		CSW01_11895	0.11	+0.4
2,535,066	+		CSW01_11895	0.11	-0.2
2,535,074	-		CSW01_11895	0.12	+1.2
2,535,074	-		CSW01_11895	0.12	-0.2
2,535,074	-		CSW01_11895	0.12	-1.4
2,535,100	+		CSW01_11895	0.15	+0.7
2,535,108	-		CSW01_11895	0.16	-4.3
2,535,108	-		CSW01_11895	0.16	-1.6
2,535,160	-		CSW01_11895	0.24	+1.6
2,535,160	-		CSW01_11895	0.24	-1.7