Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_07225

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_07215 and CSW01_07220 are separated by 7 nucleotidesCSW01_07220 and CSW01_07225 are separated by 11 nucleotidesCSW01_07225 and CSW01_07230 are separated by 13 nucleotides CSW01_07215: CSW01_07215 - cytochrome-c oxidase, cbb3-type subunit III, at 1,535,081 to 1,536,061 _07215 CSW01_07220: CSW01_07220 - CcoQ/FixQ family Cbb3-type cytochrome c oxidase assembly chaperone, at 1,536,069 to 1,536,233 _07220 CSW01_07225: CSW01_07225 - cytochrome-c oxidase, cbb3-type subunit II, at 1,536,245 to 1,536,865 _07225 CSW01_07230: CSW01_07230 - cytochrome-c oxidase, cbb3-type subunit I, at 1,536,879 to 1,538,312 _07230 Position (kb) 1536 1537Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1535.268 kb on + strand, within CSW01_07215at 1535.365 kb on + strand, within CSW01_07215at 1535.373 kb on - strand, within CSW01_07215at 1535.390 kb on + strand, within CSW01_07215at 1535.640 kb on - strand, within CSW01_07215at 1535.704 kb on - strand, within CSW01_07215at 1535.785 kb on + strand, within CSW01_07215at 1535.793 kb on - strand, within CSW01_07215at 1535.793 kb on - strand, within CSW01_07215at 1535.982 kb on + strandat 1536.345 kb on + strand, within CSW01_07225at 1536.345 kb on + strand, within CSW01_07225at 1536.460 kb on + strand, within CSW01_07225at 1536.486 kb on - strand, within CSW01_07225at 1536.520 kb on - strand, within CSW01_07225at 1536.527 kb on + strand, within CSW01_07225at 1536.535 kb on - strand, within CSW01_07225at 1536.652 kb on + strand, within CSW01_07225at 1536.660 kb on - strand, within CSW01_07225at 1536.757 kb on + strand, within CSW01_07225at 1536.777 kb on + strand, within CSW01_07225at 1536.777 kb on + strand, within CSW01_07225at 1536.835 kb on + strandat 1536.997 kb on + strandat 1536.997 kb on + strandat 1537.005 kb on - strandat 1537.014 kb on + strandat 1537.114 kb on - strand, within CSW01_07230at 1537.124 kb on - strand, within CSW01_07230at 1537.124 kb on - strand, within CSW01_07230at 1537.171 kb on + strand, within CSW01_07230at 1537.171 kb on - strand, within CSW01_07230at 1537.258 kb on + strand, within CSW01_07230at 1537.530 kb on + strand, within CSW01_07230at 1537.530 kb on + strand, within CSW01_07230at 1537.622 kb on + strand, within CSW01_07230at 1537.627 kb on + strand, within CSW01_07230at 1537.685 kb on - strand, within CSW01_07230at 1537.698 kb on + strand, within CSW01_07230at 1537.700 kb on - strand, within CSW01_07230at 1537.720 kb on - strand, within CSW01_07230at 1537.727 kb on - strand, within CSW01_07230at 1537.729 kb on + strand, within CSW01_07230at 1537.729 kb on + strand, within CSW01_07230at 1537.729 kb on + strand, within CSW01_07230at 1537.815 kb on + strand, within CSW01_07230at 1537.858 kb on + strand, within CSW01_07230

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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1,535,268 + CSW01_07215 0.19 +1.4
1,535,365 + CSW01_07215 0.29 -1.8
1,535,373 - CSW01_07215 0.30 -3.3
1,535,390 + CSW01_07215 0.31 -0.2
1,535,640 - CSW01_07215 0.57 +0.0
1,535,704 - CSW01_07215 0.64 +1.2
1,535,785 + CSW01_07215 0.72 -1.5
1,535,793 - CSW01_07215 0.73 +0.2
1,535,793 - CSW01_07215 0.73 -0.7
1,535,982 + -2.6
1,536,345 + CSW01_07225 0.16 +0.6
1,536,345 + CSW01_07225 0.16 -0.4
1,536,460 + CSW01_07225 0.35 -2.6
1,536,486 - CSW01_07225 0.39 -1.9
1,536,520 - CSW01_07225 0.44 -1.8
1,536,527 + CSW01_07225 0.45 +1.2
1,536,535 - CSW01_07225 0.47 +0.6
1,536,652 + CSW01_07225 0.66 +0.2
1,536,660 - CSW01_07225 0.67 -3.1
1,536,757 + CSW01_07225 0.82 -2.6
1,536,777 + CSW01_07225 0.86 -3.0
1,536,777 + CSW01_07225 0.86 -1.6
1,536,835 + +2.3
1,536,997 + +1.1
1,536,997 + -1.6
1,537,005 - +0.1
1,537,014 + -2.4
1,537,114 - CSW01_07230 0.16 -2.4
1,537,124 - CSW01_07230 0.17 -3.2
1,537,124 - CSW01_07230 0.17 +1.1
1,537,171 + CSW01_07230 0.20 -0.2
1,537,171 - CSW01_07230 0.20 -2.4
1,537,258 + CSW01_07230 0.26 -2.3
1,537,530 + CSW01_07230 0.45 -1.9
1,537,530 + CSW01_07230 0.45 -2.0
1,537,622 + CSW01_07230 0.52 -2.3
1,537,627 + CSW01_07230 0.52 -0.4
1,537,685 - CSW01_07230 0.56 -3.1
1,537,698 + CSW01_07230 0.57 -1.0
1,537,700 - CSW01_07230 0.57 -0.8
1,537,720 - CSW01_07230 0.59 +0.2
1,537,727 - CSW01_07230 0.59 -2.4
1,537,729 + CSW01_07230 0.59 -0.2
1,537,729 + CSW01_07230 0.59 -0.2
1,537,729 + CSW01_07230 0.59 -1.5
1,537,815 + CSW01_07230 0.65 +0.2
1,537,858 + CSW01_07230 0.68 +2.1

Or see this region's nucleotide sequence