Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_06235

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_06225 and CSW01_06230 are separated by 169 nucleotidesCSW01_06230 and CSW01_06235 overlap by 10 nucleotidesCSW01_06235 and CSW01_06240 are separated by 16 nucleotides CSW01_06225: CSW01_06225 - cytidine deaminase, at 1,303,803 to 1,304,690 _06225 CSW01_06230: CSW01_06230 - LrgB family protein, at 1,304,860 to 1,305,534 _06230 CSW01_06235: CSW01_06235 - hypothetical protein, at 1,305,525 to 1,305,914 _06235 CSW01_06240: CSW01_06240 - exodeoxyribonuclease I, at 1,305,931 to 1,307,355 _06240 Position (kb) 1305 1306Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1304.901 kb on + strandat 1304.908 kb on + strandat 1304.909 kb on - strandat 1304.925 kb on + strandat 1304.925 kb on + strandat 1304.991 kb on + strand, within CSW01_06230at 1304.999 kb on - strand, within CSW01_06230at 1305.010 kb on - strand, within CSW01_06230at 1305.010 kb on - strand, within CSW01_06230at 1305.021 kb on - strand, within CSW01_06230at 1305.036 kb on + strand, within CSW01_06230at 1305.044 kb on - strand, within CSW01_06230at 1305.044 kb on - strand, within CSW01_06230at 1305.049 kb on - strand, within CSW01_06230at 1305.077 kb on + strand, within CSW01_06230at 1305.155 kb on - strand, within CSW01_06230at 1305.206 kb on - strand, within CSW01_06230at 1305.249 kb on + strand, within CSW01_06230at 1305.257 kb on - strand, within CSW01_06230at 1305.365 kb on + strand, within CSW01_06230at 1305.455 kb on + strand, within CSW01_06230at 1305.468 kb on - strandat 1305.473 kb on - strandat 1305.580 kb on - strand, within CSW01_06235at 1305.673 kb on - strand, within CSW01_06235at 1305.732 kb on - strand, within CSW01_06235at 1305.793 kb on - strand, within CSW01_06235at 1305.884 kb on - strandat 1306.076 kb on + strand, within CSW01_06240at 1306.084 kb on - strand, within CSW01_06240at 1306.113 kb on - strand, within CSW01_06240at 1306.183 kb on + strand, within CSW01_06240at 1306.197 kb on + strand, within CSW01_06240at 1306.269 kb on + strand, within CSW01_06240at 1306.553 kb on + strand, within CSW01_06240at 1306.554 kb on + strand, within CSW01_06240at 1306.642 kb on - strand, within CSW01_06240at 1306.733 kb on + strand, within CSW01_06240at 1306.733 kb on + strand, within CSW01_06240at 1306.826 kb on + strand, within CSW01_06240at 1306.828 kb on + strand, within CSW01_06240at 1306.833 kb on + strand, within CSW01_06240at 1306.836 kb on - strand, within CSW01_06240at 1306.841 kb on - strand, within CSW01_06240at 1306.841 kb on - strand, within CSW01_06240at 1306.841 kb on - strand, within CSW01_06240

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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1,304,901 + -0.5
1,304,908 + -2.9
1,304,909 - +0.5
1,304,925 + +1.2
1,304,925 + +0.7
1,304,991 + CSW01_06230 0.19 -3.0
1,304,999 - CSW01_06230 0.21 -0.5
1,305,010 - CSW01_06230 0.22 -2.7
1,305,010 - CSW01_06230 0.22 +0.5
1,305,021 - CSW01_06230 0.24 +0.8
1,305,036 + CSW01_06230 0.26 -0.1
1,305,044 - CSW01_06230 0.27 +0.9
1,305,044 - CSW01_06230 0.27 +0.3
1,305,049 - CSW01_06230 0.28 -3.1
1,305,077 + CSW01_06230 0.32 +0.4
1,305,155 - CSW01_06230 0.44 -0.7
1,305,206 - CSW01_06230 0.51 -0.6
1,305,249 + CSW01_06230 0.58 -1.9
1,305,257 - CSW01_06230 0.59 -0.8
1,305,365 + CSW01_06230 0.75 -0.0
1,305,455 + CSW01_06230 0.88 -0.3
1,305,468 - -0.0
1,305,473 - +0.6
1,305,580 - CSW01_06235 0.14 -1.1
1,305,673 - CSW01_06235 0.38 -1.5
1,305,732 - CSW01_06235 0.53 -1.6
1,305,793 - CSW01_06235 0.69 -1.4
1,305,884 - -2.7
1,306,076 + CSW01_06240 0.10 -2.8
1,306,084 - CSW01_06240 0.11 -1.0
1,306,113 - CSW01_06240 0.13 +0.7
1,306,183 + CSW01_06240 0.18 +0.7
1,306,197 + CSW01_06240 0.19 +2.5
1,306,269 + CSW01_06240 0.24 +2.0
1,306,553 + CSW01_06240 0.44 -3.6
1,306,554 + CSW01_06240 0.44 +0.6
1,306,642 - CSW01_06240 0.50 +0.4
1,306,733 + CSW01_06240 0.56 +0.1
1,306,733 + CSW01_06240 0.56 +0.3
1,306,826 + CSW01_06240 0.63 -3.4
1,306,828 + CSW01_06240 0.63 -0.3
1,306,833 + CSW01_06240 0.63 +1.5
1,306,836 - CSW01_06240 0.64 +0.3
1,306,841 - CSW01_06240 0.64 +2.4
1,306,841 - CSW01_06240 0.64 +1.4
1,306,841 - CSW01_06240 0.64 -1.2

Or see this region's nucleotide sequence