Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04600

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04590 and CSW01_04595 are separated by 21 nucleotidesCSW01_04595 and CSW01_04600 are separated by 29 nucleotidesCSW01_04600 and CSW01_04605 are separated by 38 nucleotides CSW01_04590: CSW01_04590 - transcriptional regulator GcvA, at 953,753 to 954,673 _04590 CSW01_04595: CSW01_04595 - DUF423 domain-containing protein, at 954,695 to 955,081 _04595 CSW01_04600: CSW01_04600 - flap endonuclease Xni, at 955,111 to 955,962 _04600 CSW01_04605: CSW01_04605 - LOG family protein, at 956,001 to 957,374 _04605 Position (kb) 955 956Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 954.117 kb on + strand, within CSW01_04590at 954.117 kb on + strand, within CSW01_04590at 954.138 kb on - strand, within CSW01_04590at 954.175 kb on - strand, within CSW01_04590at 954.201 kb on + strand, within CSW01_04590at 954.258 kb on + strand, within CSW01_04590at 954.347 kb on + strand, within CSW01_04590at 954.385 kb on + strand, within CSW01_04590at 954.393 kb on - strand, within CSW01_04590at 954.430 kb on - strand, within CSW01_04590at 954.430 kb on - strand, within CSW01_04590at 954.456 kb on + strand, within CSW01_04590at 954.464 kb on - strand, within CSW01_04590at 954.530 kb on + strand, within CSW01_04590at 954.560 kb on - strand, within CSW01_04590at 954.687 kb on + strandat 954.692 kb on + strandat 954.767 kb on - strand, within CSW01_04595at 954.902 kb on + strand, within CSW01_04595at 954.986 kb on + strand, within CSW01_04595at 954.986 kb on + strand, within CSW01_04595at 954.986 kb on + strand, within CSW01_04595at 954.994 kb on - strand, within CSW01_04595at 954.996 kb on + strand, within CSW01_04595at 955.004 kb on - strand, within CSW01_04595at 955.038 kb on - strand, within CSW01_04595at 955.093 kb on + strandat 955.116 kb on - strandat 955.199 kb on - strand, within CSW01_04600at 955.199 kb on - strand, within CSW01_04600at 955.325 kb on - strand, within CSW01_04600at 955.330 kb on - strand, within CSW01_04600at 955.497 kb on - strand, within CSW01_04600at 955.538 kb on + strand, within CSW01_04600at 955.546 kb on - strand, within CSW01_04600at 955.695 kb on - strand, within CSW01_04600at 955.747 kb on + strand, within CSW01_04600at 955.750 kb on + strand, within CSW01_04600at 955.802 kb on + strand, within CSW01_04600at 955.802 kb on + strand, within CSW01_04600at 956.172 kb on - strand, within CSW01_04605at 956.186 kb on + strand, within CSW01_04605at 956.194 kb on - strand, within CSW01_04605at 956.207 kb on + strand, within CSW01_04605at 956.222 kb on + strand, within CSW01_04605at 956.380 kb on + strand, within CSW01_04605at 956.412 kb on - strand, within CSW01_04605at 956.421 kb on + strand, within CSW01_04605at 956.440 kb on + strand, within CSW01_04605at 956.498 kb on + strand, within CSW01_04605at 956.498 kb on + strand, within CSW01_04605at 956.684 kb on + strand, within CSW01_04605at 956.689 kb on + strand, within CSW01_04605at 956.689 kb on + strand, within CSW01_04605at 956.692 kb on - strand, within CSW01_04605at 956.697 kb on - strand, within CSW01_04605at 956.697 kb on - strand, within CSW01_04605at 956.737 kb on - strand, within CSW01_04605at 956.759 kb on + strand, within CSW01_04605at 956.821 kb on + strand, within CSW01_04605at 956.824 kb on - strand, within CSW01_04605at 956.826 kb on - strand, within CSW01_04605at 956.839 kb on + strand, within CSW01_04605at 956.877 kb on - strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.905 kb on + strand, within CSW01_04605at 956.908 kb on - strand, within CSW01_04605at 956.908 kb on - strand, within CSW01_04605at 956.913 kb on - strand, within CSW01_04605

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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954,117 + CSW01_04590 0.40 -0.7
954,117 + CSW01_04590 0.40 -2.2
954,138 - CSW01_04590 0.42 -0.2
954,175 - CSW01_04590 0.46 +0.1
954,201 + CSW01_04590 0.49 +0.4
954,258 + CSW01_04590 0.55 -0.6
954,347 + CSW01_04590 0.64 +1.2
954,385 + CSW01_04590 0.69 +0.4
954,393 - CSW01_04590 0.69 -2.7
954,430 - CSW01_04590 0.74 +0.4
954,430 - CSW01_04590 0.74 -3.2
954,456 + CSW01_04590 0.76 +0.0
954,464 - CSW01_04590 0.77 -0.0
954,530 + CSW01_04590 0.84 -2.2
954,560 - CSW01_04590 0.88 -1.7
954,687 + +0.3
954,692 + +0.1
954,767 - CSW01_04595 0.19 -1.2
954,902 + CSW01_04595 0.53 -1.0
954,986 + CSW01_04595 0.75 +2.8
954,986 + CSW01_04595 0.75 -0.9
954,986 + CSW01_04595 0.75 +0.6
954,994 - CSW01_04595 0.77 -0.9
954,996 + CSW01_04595 0.78 -2.5
955,004 - CSW01_04595 0.80 +0.5
955,038 - CSW01_04595 0.89 +0.4
955,093 + +0.9
955,116 - -3.5
955,199 - CSW01_04600 0.10 -3.0
955,199 - CSW01_04600 0.10 -0.4
955,325 - CSW01_04600 0.25 -0.2
955,330 - CSW01_04600 0.26 -3.3
955,497 - CSW01_04600 0.45 -1.8
955,538 + CSW01_04600 0.50 -1.5
955,546 - CSW01_04600 0.51 -0.1
955,695 - CSW01_04600 0.69 +0.2
955,747 + CSW01_04600 0.75 +0.9
955,750 + CSW01_04600 0.75 -1.8
955,802 + CSW01_04600 0.81 -2.3
955,802 + CSW01_04600 0.81 -1.4
956,172 - CSW01_04605 0.12 -1.6
956,186 + CSW01_04605 0.13 +0.4
956,194 - CSW01_04605 0.14 +0.3
956,207 + CSW01_04605 0.15 -0.4
956,222 + CSW01_04605 0.16 -4.0
956,380 + CSW01_04605 0.28 +0.9
956,412 - CSW01_04605 0.30 +0.2
956,421 + CSW01_04605 0.31 +1.3
956,440 + CSW01_04605 0.32 +1.9
956,498 + CSW01_04605 0.36 -0.6
956,498 + CSW01_04605 0.36 -0.1
956,684 + CSW01_04605 0.50 -1.5
956,689 + CSW01_04605 0.50 -2.7
956,689 + CSW01_04605 0.50 +0.7
956,692 - CSW01_04605 0.50 +1.4
956,697 - CSW01_04605 0.51 +3.3
956,697 - CSW01_04605 0.51 +0.3
956,737 - CSW01_04605 0.54 -3.1
956,759 + CSW01_04605 0.55 +0.5
956,821 + CSW01_04605 0.60 -3.8
956,824 - CSW01_04605 0.60 -0.4
956,826 - CSW01_04605 0.60 -3.8
956,839 + CSW01_04605 0.61 -0.0
956,877 - CSW01_04605 0.64 -1.6
956,905 + CSW01_04605 0.66 +0.4
956,905 + CSW01_04605 0.66 +0.0
956,905 + CSW01_04605 0.66 +0.8
956,905 + CSW01_04605 0.66 +0.6
956,908 - CSW01_04605 0.66 +0.9
956,908 - CSW01_04605 0.66 +1.3
956,913 - CSW01_04605 0.66 -0.3

Or see this region's nucleotide sequence