Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_04045

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_04035 and CSW01_04040 are separated by 116 nucleotidesCSW01_04040 and CSW01_04045 overlap by 70 nucleotidesCSW01_04045 and CSW01_04050 are separated by 9 nucleotides CSW01_04035: CSW01_04035 - Fe(3+)-siderophore ABC transporter permease, at 833,222 to 834,298 _04035 CSW01_04040: CSW01_04040 - ABC transporter ATP-binding protein, at 834,415 to 835,254 _04040 CSW01_04045: CSW01_04045 - vibriobactin biosynthesis 4'-phosphopantetheinyl transferase VibD, at 835,185 to 835,970 _04045 CSW01_04050: CSW01_04050 - LysR family transcriptional regulator, at 835,980 to 836,906 _04050 Position (kb) 835 836Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 834.185 kb on - strand, within CSW01_04035at 834.203 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.210 kb on + strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.218 kb on - strandat 834.342 kb on + strandat 834.342 kb on + strandat 834.350 kb on - strandat 834.350 kb on - strandat 834.355 kb on + strandat 834.355 kb on + strandat 834.355 kb on + strandat 834.363 kb on - strandat 834.363 kb on - strandat 834.363 kb on - strandat 834.365 kb on + strandat 834.365 kb on + strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.373 kb on - strandat 834.436 kb on + strandat 834.436 kb on + strandat 834.436 kb on + strandat 834.444 kb on - strandat 834.451 kb on + strandat 834.459 kb on - strandat 834.459 kb on - strandat 834.474 kb on + strandat 834.474 kb on + strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.482 kb on - strandat 834.592 kb on - strand, within CSW01_04040at 834.597 kb on - strand, within CSW01_04040at 834.655 kb on + strand, within CSW01_04040at 834.663 kb on - strand, within CSW01_04040at 834.711 kb on - strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.737 kb on + strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.745 kb on - strand, within CSW01_04040at 834.776 kb on - strand, within CSW01_04040at 834.806 kb on + strand, within CSW01_04040at 834.814 kb on - strand, within CSW01_04040at 834.865 kb on - strand, within CSW01_04040at 834.867 kb on + strand, within CSW01_04040at 834.870 kb on - strand, within CSW01_04040at 834.875 kb on - strand, within CSW01_04040at 834.880 kb on - strand, within CSW01_04040at 834.914 kb on - strand, within CSW01_04040at 834.999 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.033 kb on + strand, within CSW01_04040at 835.041 kb on - strand, within CSW01_04040at 835.042 kb on - strand, within CSW01_04040at 835.059 kb on - strand, within CSW01_04040at 835.090 kb on + strand, within CSW01_04040at 835.111 kb on + strand, within CSW01_04040at 835.151 kb on + strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.159 kb on - strand, within CSW01_04040at 835.227 kb on - strandat 835.227 kb on - strandat 835.227 kb on - strandat 835.319 kb on + strand, within CSW01_04045at 835.357 kb on + strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.365 kb on - strand, within CSW01_04045at 835.375 kb on + strand, within CSW01_04045at 835.383 kb on - strand, within CSW01_04045at 835.383 kb on - strand, within CSW01_04045at 835.388 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.393 kb on - strand, within CSW01_04045at 835.406 kb on - strand, within CSW01_04045at 835.425 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.466 kb on + strand, within CSW01_04045at 835.467 kb on + strand, within CSW01_04045at 835.474 kb on - strand, within CSW01_04045at 835.475 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.516 kb on - strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.571 kb on + strand, within CSW01_04045at 835.577 kb on - strand, within CSW01_04045at 835.577 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.579 kb on - strand, within CSW01_04045at 835.586 kb on - strand, within CSW01_04045at 835.594 kb on - strand, within CSW01_04045at 835.631 kb on - strand, within CSW01_04045at 835.650 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.662 kb on + strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.670 kb on - strand, within CSW01_04045at 835.742 kb on + strand, within CSW01_04045at 835.761 kb on + strand, within CSW01_04045at 835.769 kb on + strand, within CSW01_04045at 835.796 kb on + strand, within CSW01_04045at 835.796 kb on + strand, within CSW01_04045at 835.807 kb on - strand, within CSW01_04045at 835.844 kb on + strand, within CSW01_04045at 835.852 kb on + strand, within CSW01_04045at 835.857 kb on + strand, within CSW01_04045at 835.867 kb on + strand, within CSW01_04045at 835.872 kb on - strand, within CSW01_04045at 835.872 kb on - strand, within CSW01_04045at 835.910 kb on - strandat 835.939 kb on - strandat 836.059 kb on - strandat 836.073 kb on + strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050at 836.166 kb on - strand, within CSW01_04050at 836.289 kb on + strand, within CSW01_04050at 836.289 kb on + strand, within CSW01_04050at 836.294 kb on + strand, within CSW01_04050at 836.417 kb on - strand, within CSW01_04050at 836.417 kb on - strand, within CSW01_04050at 836.430 kb on + strand, within CSW01_04050at 836.435 kb on + strand, within CSW01_04050at 836.495 kb on + strand, within CSW01_04050at 836.510 kb on - strand, within CSW01_04050at 836.510 kb on - strand, within CSW01_04050at 836.568 kb on + strand, within CSW01_04050at 836.576 kb on - strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.580 kb on + strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.588 kb on - strand, within CSW01_04050at 836.633 kb on + strand, within CSW01_04050at 836.714 kb on - strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.716 kb on + strand, within CSW01_04050at 836.719 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.724 kb on - strand, within CSW01_04050at 836.746 kb on - strand, within CSW01_04050at 836.799 kb on + strand, within CSW01_04050at 836.953 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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834,185 - CSW01_04035 0.89 +1.0
834,203 + +1.0
834,210 + +0.0
834,210 + -1.1
834,210 + -0.2
834,210 + -3.2
834,210 + +0.6
834,218 - -0.2
834,218 - -2.6
834,218 - +0.7
834,218 - +0.8
834,342 + -1.1
834,342 + -1.9
834,350 - -1.0
834,350 - +0.3
834,355 + +0.2
834,355 + +2.5
834,355 + +0.7
834,363 - +0.4
834,363 - +1.2
834,363 - +1.3
834,365 + +0.7
834,365 + -1.9
834,373 - +0.3
834,373 - -0.7
834,373 - -0.6
834,373 - -1.3
834,373 - +1.3
834,436 + -1.5
834,436 + -0.3
834,436 + +1.9
834,444 - -0.0
834,451 + -0.6
834,459 - -3.9
834,459 - +1.0
834,474 + -0.5
834,474 + +0.6
834,482 - +0.9
834,482 - +0.8
834,482 - -1.5
834,482 - -1.3
834,482 - +1.6
834,592 - CSW01_04040 0.21 +0.4
834,597 - CSW01_04040 0.22 -4.9
834,655 + CSW01_04040 0.29 +0.4
834,663 - CSW01_04040 0.30 +0.8
834,711 - CSW01_04040 0.35 -1.0
834,737 + CSW01_04040 0.38 -0.8
834,737 + CSW01_04040 0.38 +0.6
834,737 + CSW01_04040 0.38 -3.8
834,737 + CSW01_04040 0.38 -1.4
834,737 + CSW01_04040 0.38 -0.9
834,737 + CSW01_04040 0.38 +0.7
834,745 - CSW01_04040 0.39 -0.5
834,745 - CSW01_04040 0.39 -1.5
834,745 - CSW01_04040 0.39 -0.0
834,745 - CSW01_04040 0.39 +0.8
834,745 - CSW01_04040 0.39 -2.5
834,745 - CSW01_04040 0.39 +1.0
834,745 - CSW01_04040 0.39 -0.2
834,776 - CSW01_04040 0.43 -0.0
834,806 + CSW01_04040 0.47 -0.4
834,814 - CSW01_04040 0.47 +1.3
834,865 - CSW01_04040 0.54 -0.7
834,867 + CSW01_04040 0.54 +0.1
834,870 - CSW01_04040 0.54 -1.1
834,875 - CSW01_04040 0.55 +0.2
834,880 - CSW01_04040 0.55 -0.9
834,914 - CSW01_04040 0.59 -2.4
834,999 + CSW01_04040 0.70 -1.4
835,033 + CSW01_04040 0.74 -0.9
835,033 + CSW01_04040 0.74 -1.7
835,041 - CSW01_04040 0.75 -0.9
835,042 - CSW01_04040 0.75 -0.1
835,059 - CSW01_04040 0.77 +2.8
835,090 + CSW01_04040 0.80 -0.4
835,111 + CSW01_04040 0.83 +3.3
835,151 + CSW01_04040 0.88 -2.8
835,159 - CSW01_04040 0.89 -0.2
835,159 - CSW01_04040 0.89 -2.5
835,227 - +0.3
835,227 - +1.4
835,227 - -2.9
835,319 + CSW01_04045 0.17 +2.4
835,357 + CSW01_04045 0.22 -0.4
835,365 - CSW01_04045 0.23 -4.0
835,365 - CSW01_04045 0.23 +2.2
835,365 - CSW01_04045 0.23 +0.8
835,375 + CSW01_04045 0.24 +1.3
835,383 - CSW01_04045 0.25 +1.9
835,383 - CSW01_04045 0.25 +4.5
835,388 - CSW01_04045 0.26 -0.2
835,393 - CSW01_04045 0.26 -2.0
835,393 - CSW01_04045 0.26 +2.2
835,393 - CSW01_04045 0.26 +2.1
835,406 - CSW01_04045 0.28 -1.4
835,425 + CSW01_04045 0.31 -2.9
835,466 + CSW01_04045 0.36 +1.8
835,466 + CSW01_04045 0.36 +1.7
835,466 + CSW01_04045 0.36 -1.6
835,466 + CSW01_04045 0.36 -0.2
835,467 + CSW01_04045 0.36 +0.9
835,474 - CSW01_04045 0.37 +0.9
835,475 - CSW01_04045 0.37 -0.7
835,516 - CSW01_04045 0.42 +2.5
835,516 - CSW01_04045 0.42 +0.7
835,516 - CSW01_04045 0.42 +1.3
835,571 + CSW01_04045 0.49 +0.3
835,571 + CSW01_04045 0.49 +0.3
835,571 + CSW01_04045 0.49 -0.1
835,571 + CSW01_04045 0.49 +0.6
835,571 + CSW01_04045 0.49 +1.4
835,571 + CSW01_04045 0.49 +0.1
835,577 - CSW01_04045 0.50 +0.9
835,577 - CSW01_04045 0.50 +1.4
835,579 - CSW01_04045 0.50 -3.7
835,579 - CSW01_04045 0.50 -3.6
835,579 - CSW01_04045 0.50 -4.4
835,586 - CSW01_04045 0.51 -1.9
835,594 - CSW01_04045 0.52 +0.2
835,631 - CSW01_04045 0.57 -0.2
835,650 + CSW01_04045 0.59 +1.9
835,662 + CSW01_04045 0.61 +0.8
835,662 + CSW01_04045 0.61 -1.4
835,662 + CSW01_04045 0.61 -2.5
835,662 + CSW01_04045 0.61 -2.3
835,670 - CSW01_04045 0.62 +1.5
835,670 - CSW01_04045 0.62 +0.6
835,670 - CSW01_04045 0.62 +0.7
835,670 - CSW01_04045 0.62 +1.8
835,670 - CSW01_04045 0.62 +0.7
835,670 - CSW01_04045 0.62 +0.7
835,670 - CSW01_04045 0.62 +0.6
835,670 - CSW01_04045 0.62 -3.6
835,670 - CSW01_04045 0.62 +0.1
835,670 - CSW01_04045 0.62 +0.6
835,670 - CSW01_04045 0.62 +1.4
835,670 - CSW01_04045 0.62 -0.4
835,670 - CSW01_04045 0.62 -2.6
835,670 - CSW01_04045 0.62 -1.7
835,670 - CSW01_04045 0.62 +0.9
835,742 + CSW01_04045 0.71 -1.2
835,761 + CSW01_04045 0.73 -2.2
835,769 + CSW01_04045 0.74 -2.4
835,796 + CSW01_04045 0.78 +1.1
835,796 + CSW01_04045 0.78 +0.5
835,807 - CSW01_04045 0.79 +1.5
835,844 + CSW01_04045 0.84 -0.5
835,852 + CSW01_04045 0.85 +1.1
835,857 + CSW01_04045 0.85 +0.7
835,867 + CSW01_04045 0.87 +1.4
835,872 - CSW01_04045 0.87 +1.2
835,872 - CSW01_04045 0.87 -3.4
835,910 - -2.0
835,939 - +0.3
836,059 - -0.6
836,073 + CSW01_04050 0.10 -4.0
836,166 - CSW01_04050 0.20 +1.3
836,166 - CSW01_04050 0.20 -1.9
836,289 + CSW01_04050 0.33 -3.4
836,289 + CSW01_04050 0.33 +0.0
836,294 + CSW01_04050 0.34 +1.7
836,417 - CSW01_04050 0.47 +2.7
836,417 - CSW01_04050 0.47 +1.2
836,430 + CSW01_04050 0.49 +0.5
836,435 + CSW01_04050 0.49 -0.7
836,495 + CSW01_04050 0.56 -2.1
836,510 - CSW01_04050 0.57 -1.4
836,510 - CSW01_04050 0.57 +0.2
836,568 + CSW01_04050 0.63 -0.1
836,576 - CSW01_04050 0.64 +0.1
836,580 + CSW01_04050 0.65 +0.1
836,580 + CSW01_04050 0.65 +2.5
836,580 + CSW01_04050 0.65 -1.7
836,580 + CSW01_04050 0.65 +1.4
836,580 + CSW01_04050 0.65 -0.5
836,580 + CSW01_04050 0.65 +1.2
836,580 + CSW01_04050 0.65 +0.6
836,588 - CSW01_04050 0.66 +1.3
836,588 - CSW01_04050 0.66 -2.5
836,588 - CSW01_04050 0.66 +0.3
836,588 - CSW01_04050 0.66 -0.6
836,588 - CSW01_04050 0.66 +1.0
836,588 - CSW01_04050 0.66 +1.6
836,588 - CSW01_04050 0.66 -0.7
836,633 + CSW01_04050 0.70 -0.8
836,714 - CSW01_04050 0.79 -0.6
836,716 + CSW01_04050 0.79 +0.7
836,716 + CSW01_04050 0.79 -1.1
836,716 + CSW01_04050 0.79 -4.3
836,719 - CSW01_04050 0.80 -0.2
836,724 - CSW01_04050 0.80 -1.8
836,724 - CSW01_04050 0.80 +0.2
836,724 - CSW01_04050 0.80 +1.1
836,724 - CSW01_04050 0.80 +1.1
836,746 - CSW01_04050 0.83 -2.5
836,799 + CSW01_04050 0.88 +0.5
836,953 + -0.3

Or see this region's nucleotide sequence