Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03785 and CSW01_03790 are separated by 9 nucleotides CSW01_03790 and CSW01_03795 are separated by 2 nucleotides CSW01_03795 and CSW01_03800 are separated by 33 nucleotides
CSW01_03785: CSW01_03785 - phosphate ABC transporter permease, at 777,854 to 780,049
_03785
CSW01_03790: CSW01_03790 - phosphate ABC transporter, permease protein PstA, at 780,059 to 781,705
_03790
CSW01_03795: CSW01_03795 - phosphate ABC transporter ATP-binding protein, at 781,708 to 782,529
_03795
CSW01_03800: CSW01_03800 - phosphate transport system regulator PhoU, at 782,563 to 783,273
_03800
Position (kb) 780
781
782 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 779.312 kb on + strand, within CSW01_03785 at 779.443 kb on + strand, within CSW01_03785 at 779.477 kb on + strand, within CSW01_03785 at 779.506 kb on + strand, within CSW01_03785 at 779.593 kb on - strand, within CSW01_03785 at 779.812 kb on + strand, within CSW01_03785 at 779.836 kb on + strand at 779.901 kb on + strand at 780.248 kb on + strand, within CSW01_03790 at 780.312 kb on + strand, within CSW01_03790 at 780.658 kb on + strand, within CSW01_03790 at 781.089 kb on - strand, within CSW01_03790 at 781.214 kb on + strand, within CSW01_03790 at 781.229 kb on + strand, within CSW01_03790 at 781.229 kb on + strand, within CSW01_03790 at 781.229 kb on + strand, within CSW01_03790 at 781.237 kb on - strand, within CSW01_03790 at 781.237 kb on - strand, within CSW01_03790 at 781.328 kb on - strand, within CSW01_03790 at 781.725 kb on - strand at 781.726 kb on + strand at 781.736 kb on + strand at 781.744 kb on - strand at 781.869 kb on - strand, within CSW01_03795 at 781.919 kb on + strand, within CSW01_03795 at 782.327 kb on + strand, within CSW01_03795 at 782.330 kb on + strand, within CSW01_03795 at 782.554 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 779,312 + CSW01_03785 0.66 -2.3 779,443 + CSW01_03785 0.72 -1.6 779,477 + CSW01_03785 0.74 -2.0 779,506 + CSW01_03785 0.75 -1.7 779,593 - CSW01_03785 0.79 -0.3 779,812 + CSW01_03785 0.89 -3.2 779,836 + -3.4 779,901 + +1.4 780,248 + CSW01_03790 0.11 -2.2 780,312 + CSW01_03790 0.15 -1.5 780,658 + CSW01_03790 0.36 -2.5 781,089 - CSW01_03790 0.63 -0.1 781,214 + CSW01_03790 0.70 -1.7 781,229 + CSW01_03790 0.71 -2.4 781,229 + CSW01_03790 0.71 -2.9 781,229 + CSW01_03790 0.71 -2.8 781,237 - CSW01_03790 0.72 -1.9 781,237 - CSW01_03790 0.72 -1.6 781,328 - CSW01_03790 0.77 -1.2 781,725 - +2.2 781,726 + -2.3 781,736 + -0.7 781,744 - +0.7 781,869 - CSW01_03795 0.20 -1.4 781,919 + CSW01_03795 0.26 -1.4 782,327 + CSW01_03795 0.75 -0.9 782,330 + CSW01_03795 0.76 -2.7 782,554 + -1.4
Or see this region's nucleotide sequence