Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03780

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03775 and CSW01_03780 overlap by 89 nucleotidesCSW01_03780 and CSW01_03785 are separated by 198 nucleotides CSW01_03775: CSW01_03775 - exopolyphosphatase, at 774,067 to 775,638 _03775 CSW01_03780: CSW01_03780 - polyphosphate kinase 1, at 775,550 to 777,655 _03780 CSW01_03785: CSW01_03785 - phosphate ABC transporter permease, at 777,854 to 780,049 _03785 Position (kb) 775 776 777 778Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 774.556 kb on + strand, within CSW01_03775at 774.564 kb on - strand, within CSW01_03775at 774.570 kb on - strand, within CSW01_03775at 774.582 kb on + strand, within CSW01_03775at 774.605 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.678 kb on - strand, within CSW01_03775at 774.791 kb on - strand, within CSW01_03775at 774.807 kb on + strand, within CSW01_03775at 774.807 kb on + strand, within CSW01_03775at 774.855 kb on + strand, within CSW01_03775at 774.855 kb on + strand, within CSW01_03775at 774.862 kb on + strand, within CSW01_03775at 774.997 kb on + strand, within CSW01_03775at 775.072 kb on + strand, within CSW01_03775at 775.085 kb on + strand, within CSW01_03775at 775.087 kb on + strand, within CSW01_03775at 775.095 kb on + strand, within CSW01_03775at 775.098 kb on - strand, within CSW01_03775at 775.103 kb on - strand, within CSW01_03775at 775.174 kb on + strand, within CSW01_03775at 775.182 kb on - strand, within CSW01_03775at 775.187 kb on - strand, within CSW01_03775at 775.246 kb on + strand, within CSW01_03775at 775.286 kb on + strand, within CSW01_03775at 775.302 kb on + strand, within CSW01_03775at 775.310 kb on - strand, within CSW01_03775at 775.335 kb on + strand, within CSW01_03775at 775.335 kb on + strand, within CSW01_03775at 775.335 kb on + strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.343 kb on - strand, within CSW01_03775at 775.375 kb on + strand, within CSW01_03775at 775.375 kb on + strand, within CSW01_03775at 775.383 kb on - strand, within CSW01_03775at 775.383 kb on - strand, within CSW01_03775at 775.383 kb on - strand, within CSW01_03775at 775.520 kb on + strandat 775.767 kb on - strand, within CSW01_03780at 775.809 kb on + strand, within CSW01_03780at 775.824 kb on - strand, within CSW01_03780at 775.838 kb on + strand, within CSW01_03780at 775.852 kb on - strand, within CSW01_03780at 775.854 kb on - strand, within CSW01_03780at 775.901 kb on + strand, within CSW01_03780at 775.903 kb on + strand, within CSW01_03780at 775.911 kb on - strand, within CSW01_03780at 775.911 kb on - strand, within CSW01_03780at 775.956 kb on + strand, within CSW01_03780at 775.985 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.053 kb on + strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.061 kb on - strand, within CSW01_03780at 776.083 kb on + strand, within CSW01_03780at 776.177 kb on + strand, within CSW01_03780at 776.248 kb on - strand, within CSW01_03780at 776.264 kb on - strand, within CSW01_03780at 776.277 kb on - strand, within CSW01_03780at 776.277 kb on - strand, within CSW01_03780at 776.355 kb on + strand, within CSW01_03780at 776.357 kb on - strand, within CSW01_03780at 776.423 kb on + strand, within CSW01_03780at 776.427 kb on + strand, within CSW01_03780at 776.427 kb on + strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.435 kb on - strand, within CSW01_03780at 776.504 kb on - strand, within CSW01_03780at 776.525 kb on + strand, within CSW01_03780at 776.609 kb on - strand, within CSW01_03780at 776.616 kb on - strand, within CSW01_03780at 776.616 kb on - strand, within CSW01_03780at 776.616 kb on - strand, within CSW01_03780at 776.620 kb on + strand, within CSW01_03780at 776.625 kb on + strand, within CSW01_03780at 776.628 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.633 kb on - strand, within CSW01_03780at 776.844 kb on + strand, within CSW01_03780at 776.861 kb on + strand, within CSW01_03780at 776.866 kb on + strand, within CSW01_03780at 776.869 kb on - strand, within CSW01_03780at 776.871 kb on - strand, within CSW01_03780at 776.871 kb on - strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.899 kb on + strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.907 kb on - strand, within CSW01_03780at 776.933 kb on + strand, within CSW01_03780at 776.933 kb on + strand, within CSW01_03780at 776.938 kb on - strand, within CSW01_03780at 776.941 kb on - strand, within CSW01_03780at 776.998 kb on + strand, within CSW01_03780at 776.998 kb on - strand, within CSW01_03780at 777.006 kb on - strand, within CSW01_03780at 777.018 kb on - strand, within CSW01_03780at 777.072 kb on - strand, within CSW01_03780at 777.102 kb on - strand, within CSW01_03780at 777.165 kb on + strand, within CSW01_03780at 777.194 kb on - strand, within CSW01_03780at 777.219 kb on + strand, within CSW01_03780at 777.238 kb on + strand, within CSW01_03780at 777.238 kb on + strand, within CSW01_03780at 777.241 kb on + strand, within CSW01_03780at 777.246 kb on - strand, within CSW01_03780at 777.246 kb on - strand, within CSW01_03780at 777.254 kb on - strand, within CSW01_03780at 777.256 kb on - strand, within CSW01_03780at 777.420 kb on + strand, within CSW01_03780at 777.428 kb on - strand, within CSW01_03780at 777.431 kb on - strand, within CSW01_03780at 777.457 kb on + strandat 777.556 kb on + strandat 777.601 kb on + strandat 777.601 kb on + strandat 777.601 kb on + strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.609 kb on - strandat 777.633 kb on + strandat 777.641 kb on - strandat 777.641 kb on - strandat 777.741 kb on + strandat 777.742 kb on + strandat 777.748 kb on + strandat 777.749 kb on - strandat 777.769 kb on - strandat 777.828 kb on + strandat 777.828 kb on + strandat 777.931 kb on + strandat 778.185 kb on + strand, within CSW01_03785at 778.193 kb on + strand, within CSW01_03785at 778.339 kb on - strand, within CSW01_03785at 778.545 kb on + strand, within CSW01_03785

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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774,556 + CSW01_03775 0.31 +1.4
774,564 - CSW01_03775 0.32 -1.6
774,570 - CSW01_03775 0.32 -0.6
774,582 + CSW01_03775 0.33 -0.4
774,605 - CSW01_03775 0.34 +0.6
774,678 - CSW01_03775 0.39 +0.1
774,678 - CSW01_03775 0.39 +1.1
774,678 - CSW01_03775 0.39 -0.3
774,791 - CSW01_03775 0.46 +1.0
774,807 + CSW01_03775 0.47 -1.8
774,807 + CSW01_03775 0.47 -0.5
774,855 + CSW01_03775 0.50 +0.8
774,855 + CSW01_03775 0.50 +0.2
774,862 + CSW01_03775 0.51 -1.2
774,997 + CSW01_03775 0.59 -3.3
775,072 + CSW01_03775 0.64 -0.3
775,085 + CSW01_03775 0.65 +0.7
775,087 + CSW01_03775 0.65 -1.1
775,095 + CSW01_03775 0.65 +0.5
775,098 - CSW01_03775 0.66 -0.8
775,103 - CSW01_03775 0.66 +0.5
775,174 + CSW01_03775 0.70 -0.2
775,182 - CSW01_03775 0.71 -4.2
775,187 - CSW01_03775 0.71 -3.1
775,246 + CSW01_03775 0.75 +1.0
775,286 + CSW01_03775 0.78 -1.6
775,302 + CSW01_03775 0.79 +1.7
775,310 - CSW01_03775 0.79 -1.5
775,335 + CSW01_03775 0.81 -0.4
775,335 + CSW01_03775 0.81 +1.8
775,335 + CSW01_03775 0.81 +1.0
775,343 - CSW01_03775 0.81 +0.0
775,343 - CSW01_03775 0.81 +1.8
775,343 - CSW01_03775 0.81 +1.0
775,343 - CSW01_03775 0.81 -0.4
775,375 + CSW01_03775 0.83 +2.3
775,375 + CSW01_03775 0.83 +0.7
775,383 - CSW01_03775 0.84 -1.5
775,383 - CSW01_03775 0.84 +1.5
775,383 - CSW01_03775 0.84 +1.1
775,520 + -0.3
775,767 - CSW01_03780 0.10 +0.8
775,809 + CSW01_03780 0.12 -0.4
775,824 - CSW01_03780 0.13 +0.0
775,838 + CSW01_03780 0.14 -2.4
775,852 - CSW01_03780 0.14 -2.8
775,854 - CSW01_03780 0.14 -2.0
775,901 + CSW01_03780 0.17 +2.3
775,903 + CSW01_03780 0.17 +1.2
775,911 - CSW01_03780 0.17 +2.3
775,911 - CSW01_03780 0.17 +1.1
775,956 + CSW01_03780 0.19 +0.5
775,985 + CSW01_03780 0.21 -0.6
776,053 + CSW01_03780 0.24 -0.4
776,053 + CSW01_03780 0.24 -0.3
776,053 + CSW01_03780 0.24 +1.0
776,053 + CSW01_03780 0.24 -0.6
776,053 + CSW01_03780 0.24 -2.9
776,053 + CSW01_03780 0.24 -2.0
776,061 - CSW01_03780 0.24 -2.5
776,061 - CSW01_03780 0.24 +0.7
776,061 - CSW01_03780 0.24 -0.5
776,061 - CSW01_03780 0.24 -0.1
776,083 + CSW01_03780 0.25 +0.1
776,177 + CSW01_03780 0.30 -2.6
776,248 - CSW01_03780 0.33 +0.8
776,264 - CSW01_03780 0.34 +1.3
776,277 - CSW01_03780 0.35 -0.6
776,277 - CSW01_03780 0.35 -0.2
776,355 + CSW01_03780 0.38 +0.2
776,357 - CSW01_03780 0.38 -2.0
776,423 + CSW01_03780 0.41 +0.9
776,427 + CSW01_03780 0.42 +1.7
776,427 + CSW01_03780 0.42 -1.5
776,435 - CSW01_03780 0.42 -0.4
776,435 - CSW01_03780 0.42 +0.7
776,435 - CSW01_03780 0.42 +0.2
776,435 - CSW01_03780 0.42 +0.1
776,435 - CSW01_03780 0.42 -1.0
776,504 - CSW01_03780 0.45 -3.2
776,525 + CSW01_03780 0.46 +0.8
776,609 - CSW01_03780 0.50 +0.7
776,616 - CSW01_03780 0.51 +0.7
776,616 - CSW01_03780 0.51 +1.4
776,616 - CSW01_03780 0.51 -1.0
776,620 + CSW01_03780 0.51 +0.4
776,625 + CSW01_03780 0.51 +2.3
776,628 - CSW01_03780 0.51 +1.2
776,633 - CSW01_03780 0.51 +1.4
776,633 - CSW01_03780 0.51 -0.4
776,633 - CSW01_03780 0.51 -2.7
776,633 - CSW01_03780 0.51 -2.1
776,633 - CSW01_03780 0.51 -0.0
776,844 + CSW01_03780 0.61 -0.6
776,861 + CSW01_03780 0.62 -1.3
776,866 + CSW01_03780 0.62 +1.5
776,869 - CSW01_03780 0.63 +1.6
776,871 - CSW01_03780 0.63 -1.8
776,871 - CSW01_03780 0.63 -2.6
776,899 + CSW01_03780 0.64 -0.9
776,899 + CSW01_03780 0.64 -0.4
776,899 + CSW01_03780 0.64 -2.3
776,899 + CSW01_03780 0.64 -0.8
776,899 + CSW01_03780 0.64 +0.2
776,899 + CSW01_03780 0.64 +0.4
776,899 + CSW01_03780 0.64 -0.8
776,907 - CSW01_03780 0.64 +1.0
776,907 - CSW01_03780 0.64 -3.1
776,907 - CSW01_03780 0.64 +0.5
776,907 - CSW01_03780 0.64 -0.1
776,907 - CSW01_03780 0.64 +0.9
776,907 - CSW01_03780 0.64 -1.8
776,933 + CSW01_03780 0.66 +0.9
776,933 + CSW01_03780 0.66 -0.2
776,938 - CSW01_03780 0.66 -1.2
776,941 - CSW01_03780 0.66 +0.5
776,998 + CSW01_03780 0.69 -1.8
776,998 - CSW01_03780 0.69 -0.0
777,006 - CSW01_03780 0.69 -2.7
777,018 - CSW01_03780 0.70 +0.4
777,072 - CSW01_03780 0.72 +2.7
777,102 - CSW01_03780 0.74 +2.3
777,165 + CSW01_03780 0.77 +0.3
777,194 - CSW01_03780 0.78 -0.2
777,219 + CSW01_03780 0.79 -3.7
777,238 + CSW01_03780 0.80 -1.8
777,238 + CSW01_03780 0.80 +0.6
777,241 + CSW01_03780 0.80 +2.1
777,246 - CSW01_03780 0.81 -2.6
777,246 - CSW01_03780 0.81 -2.3
777,254 - CSW01_03780 0.81 +1.3
777,256 - CSW01_03780 0.81 +1.0
777,420 + CSW01_03780 0.89 +0.8
777,428 - CSW01_03780 0.89 +1.5
777,431 - CSW01_03780 0.89 +0.4
777,457 + -0.3
777,556 + -2.9
777,601 + +0.9
777,601 + -2.2
777,601 + -0.6
777,609 - +0.4
777,609 - -4.0
777,609 - -3.4
777,609 - -1.0
777,609 - +0.6
777,633 + +0.6
777,641 - +0.5
777,641 - -3.6
777,741 + -0.7
777,742 + +0.6
777,748 + +0.2
777,749 - +0.6
777,769 - -1.4
777,828 + +0.5
777,828 + -1.9
777,931 + -0.3
778,185 + CSW01_03785 0.15 -1.0
778,193 + CSW01_03785 0.15 -0.3
778,339 - CSW01_03785 0.22 -0.2
778,545 + CSW01_03785 0.31 +1.4

Or see this region's nucleotide sequence