Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03760

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03755 and CSW01_03760 are separated by 236 nucleotidesCSW01_03760 and CSW01_03765 are separated by 21 nucleotides CSW01_03755: CSW01_03755 - recombination-associated protein RdgC, at 769,862 to 770,776 _03755 CSW01_03760: CSW01_03760 - phosphate regulon transcriptional regulatory protein PhoB, at 771,013 to 771,702 _03760 CSW01_03765: CSW01_03765 - two-component system sensor histidine kinase PhoR, at 771,724 to 773,025 _03765 Position (kb) 771 772Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 770.105 kb on + strand, within CSW01_03755at 770.143 kb on - strand, within CSW01_03755at 770.184 kb on + strand, within CSW01_03755at 770.189 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.209 kb on + strand, within CSW01_03755at 770.217 kb on - strand, within CSW01_03755at 770.217 kb on - strand, within CSW01_03755at 770.217 kb on - strand, within CSW01_03755at 770.236 kb on + strand, within CSW01_03755at 770.244 kb on - strand, within CSW01_03755at 770.303 kb on + strand, within CSW01_03755at 770.340 kb on - strand, within CSW01_03755at 770.510 kb on - strand, within CSW01_03755at 770.625 kb on + strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.633 kb on - strand, within CSW01_03755at 770.638 kb on - strand, within CSW01_03755at 770.729 kb on - strandat 770.760 kb on - strandat 770.893 kb on - strandat 770.901 kb on - strandat 770.945 kb on + strandat 770.945 kb on + strandat 770.945 kb on + strandat 771.054 kb on - strandat 771.061 kb on + strandat 771.234 kb on - strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.293 kb on + strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.301 kb on - strand, within CSW01_03760at 771.322 kb on + strand, within CSW01_03760at 771.364 kb on - strand, within CSW01_03760at 771.391 kb on + strand, within CSW01_03760at 771.517 kb on + strand, within CSW01_03760at 771.517 kb on + strand, within CSW01_03760at 771.525 kb on - strand, within CSW01_03760at 771.537 kb on - strand, within CSW01_03760at 771.557 kb on - strand, within CSW01_03760at 771.626 kb on + strand, within CSW01_03760at 771.676 kb on + strandat 771.679 kb on - strandat 771.684 kb on - strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.697 kb on + strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.705 kb on - strandat 771.707 kb on + strandat 771.715 kb on - strandat 771.755 kb on + strandat 771.811 kb on + strandat 771.825 kb on + strandat 772.007 kb on + strand, within CSW01_03765at 772.049 kb on - strand, within CSW01_03765at 772.097 kb on - strand, within CSW01_03765at 772.136 kb on + strand, within CSW01_03765at 772.146 kb on + strand, within CSW01_03765at 772.269 kb on + strand, within CSW01_03765at 772.275 kb on + strand, within CSW01_03765at 772.282 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.290 kb on + strand, within CSW01_03765at 772.291 kb on - strand, within CSW01_03765at 772.317 kb on + strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.334 kb on - strand, within CSW01_03765at 772.372 kb on - strand, within CSW01_03765at 772.421 kb on + strand, within CSW01_03765at 772.446 kb on - strand, within CSW01_03765at 772.529 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.553 kb on - strand, within CSW01_03765at 772.612 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765at 772.666 kb on - strand, within CSW01_03765

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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770,105 + CSW01_03755 0.27 -0.9
770,143 - CSW01_03755 0.31 +0.2
770,184 + CSW01_03755 0.35 -2.6
770,189 + CSW01_03755 0.36 +1.9
770,209 + CSW01_03755 0.38 -0.8
770,209 + CSW01_03755 0.38 -0.8
770,209 + CSW01_03755 0.38 -0.2
770,209 + CSW01_03755 0.38 +0.3
770,217 - CSW01_03755 0.39 -0.4
770,217 - CSW01_03755 0.39 -1.8
770,217 - CSW01_03755 0.39 +0.3
770,236 + CSW01_03755 0.41 -0.1
770,244 - CSW01_03755 0.42 -3.5
770,303 + CSW01_03755 0.48 -1.2
770,340 - CSW01_03755 0.52 +1.9
770,510 - CSW01_03755 0.71 +0.1
770,625 + CSW01_03755 0.83 -0.6
770,633 - CSW01_03755 0.84 -0.2
770,633 - CSW01_03755 0.84 +0.8
770,633 - CSW01_03755 0.84 -1.0
770,633 - CSW01_03755 0.84 -1.0
770,638 - CSW01_03755 0.85 +0.9
770,729 - -0.8
770,760 - -0.3
770,893 - -2.7
770,901 - -3.4
770,945 + -0.4
770,945 + -2.3
770,945 + -0.6
771,054 - -0.2
771,061 + -1.4
771,234 - CSW01_03760 0.32 -0.0
771,293 + CSW01_03760 0.41 -3.3
771,293 + CSW01_03760 0.41 -0.6
771,293 + CSW01_03760 0.41 +0.1
771,293 + CSW01_03760 0.41 -2.1
771,301 - CSW01_03760 0.42 -1.2
771,301 - CSW01_03760 0.42 -0.1
771,301 - CSW01_03760 0.42 +1.0
771,301 - CSW01_03760 0.42 -2.4
771,301 - CSW01_03760 0.42 -0.9
771,301 - CSW01_03760 0.42 -3.0
771,301 - CSW01_03760 0.42 -1.7
771,301 - CSW01_03760 0.42 +0.7
771,301 - CSW01_03760 0.42 -0.1
771,322 + CSW01_03760 0.45 -1.6
771,364 - CSW01_03760 0.51 -0.5
771,391 + CSW01_03760 0.55 +0.2
771,517 + CSW01_03760 0.73 +0.2
771,517 + CSW01_03760 0.73 -2.0
771,525 - CSW01_03760 0.74 -0.6
771,537 - CSW01_03760 0.76 -1.0
771,557 - CSW01_03760 0.79 -2.8
771,626 + CSW01_03760 0.89 -1.7
771,676 + +0.9
771,679 - -2.5
771,684 - -1.6
771,697 + -2.5
771,697 + +1.2
771,697 + -0.7
771,697 + +0.3
771,697 + +1.3
771,705 - +0.3
771,705 - -1.7
771,705 - +1.4
771,705 - -3.0
771,705 - -2.0
771,705 - +1.2
771,705 - +2.0
771,705 - +1.1
771,705 - +0.2
771,707 + -0.9
771,715 - -0.3
771,755 + -1.0
771,811 + -0.8
771,825 + -2.9
772,007 + CSW01_03765 0.22 -2.2
772,049 - CSW01_03765 0.25 +0.0
772,097 - CSW01_03765 0.29 -0.5
772,136 + CSW01_03765 0.32 +0.5
772,146 + CSW01_03765 0.32 -1.6
772,269 + CSW01_03765 0.42 -2.5
772,275 + CSW01_03765 0.42 +0.1
772,282 + CSW01_03765 0.43 -1.6
772,290 + CSW01_03765 0.43 +0.1
772,290 + CSW01_03765 0.43 -1.0
772,290 + CSW01_03765 0.43 -0.6
772,291 - CSW01_03765 0.44 +1.2
772,317 + CSW01_03765 0.46 +0.6
772,334 - CSW01_03765 0.47 +0.2
772,334 - CSW01_03765 0.47 -2.2
772,334 - CSW01_03765 0.47 -2.6
772,372 - CSW01_03765 0.50 +1.3
772,421 + CSW01_03765 0.54 -0.0
772,446 - CSW01_03765 0.55 +0.2
772,529 - CSW01_03765 0.62 +0.0
772,553 - CSW01_03765 0.64 +0.7
772,553 - CSW01_03765 0.64 -1.2
772,553 - CSW01_03765 0.64 +0.1
772,553 - CSW01_03765 0.64 -0.5
772,612 - CSW01_03765 0.68 -0.2
772,666 - CSW01_03765 0.72 -1.4
772,666 - CSW01_03765 0.72 -2.4

Or see this region's nucleotide sequence