Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03705

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03695 and CSW01_03700 are separated by 2 nucleotidesCSW01_03700 and CSW01_03705 are separated by 124 nucleotidesCSW01_03705 and CSW01_03710 are separated by 517 nucleotides CSW01_03695: CSW01_03695 - ribosomal large subunit pseudouridine synthase D, at 756,595 to 757,569 _03695 CSW01_03700: CSW01_03700 - multi-copper polyphenol oxidoreductase, at 757,572 to 758,294 _03700 CSW01_03705: CSW01_03705 - chaperone protein ClpB, at 758,419 to 760,992 _03705 CSW01_03710: CSW01_03710 - 16S ribosomal RNA, at 761,510 to 763,059 _03710 Position (kb) 758 759 760 761Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 757.429 kb on - strand, within CSW01_03695at 757.517 kb on - strandat 757.520 kb on + strandat 757.520 kb on + strandat 757.520 kb on + strandat 757.520 kb on + strandat 757.528 kb on - strandat 757.528 kb on - strandat 757.528 kb on - strandat 757.528 kb on - strandat 757.530 kb on - strandat 757.648 kb on + strand, within CSW01_03700at 757.648 kb on + strand, within CSW01_03700at 757.659 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.660 kb on + strand, within CSW01_03700at 757.667 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.668 kb on - strand, within CSW01_03700at 757.679 kb on - strand, within CSW01_03700at 757.687 kb on - strand, within CSW01_03700at 757.695 kb on + strand, within CSW01_03700at 757.698 kb on - strand, within CSW01_03700at 757.759 kb on + strand, within CSW01_03700at 757.790 kb on - strand, within CSW01_03700at 757.823 kb on - strand, within CSW01_03700at 757.848 kb on - strand, within CSW01_03700at 757.854 kb on + strand, within CSW01_03700at 757.919 kb on + strand, within CSW01_03700at 757.938 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.965 kb on + strand, within CSW01_03700at 757.973 kb on - strand, within CSW01_03700at 758.006 kb on - strand, within CSW01_03700at 758.187 kb on + strand, within CSW01_03700at 758.189 kb on - strand, within CSW01_03700at 758.207 kb on - strand, within CSW01_03700at 758.209 kb on - strand, within CSW01_03700at 758.289 kb on + strandat 758.289 kb on + strandat 758.289 kb on - strandat 758.295 kb on + strandat 758.295 kb on + strandat 758.297 kb on - strandat 758.402 kb on + strandat 758.472 kb on + strandat 758.486 kb on + strandat 758.509 kb on + strandat 758.525 kb on - strandat 758.574 kb on + strandat 758.579 kb on + strandat 758.664 kb on + strandat 758.667 kb on - strandat 758.726 kb on - strand, within CSW01_03705at 758.728 kb on + strand, within CSW01_03705at 758.736 kb on - strand, within CSW01_03705at 758.782 kb on + strand, within CSW01_03705at 758.801 kb on + strand, within CSW01_03705at 758.801 kb on + strand, within CSW01_03705at 758.809 kb on - strand, within CSW01_03705at 758.809 kb on - strand, within CSW01_03705at 758.809 kb on - strand, within CSW01_03705at 758.809 kb on - strand, within CSW01_03705at 758.855 kb on + strand, within CSW01_03705at 758.892 kb on - strand, within CSW01_03705at 758.920 kb on - strand, within CSW01_03705at 758.926 kb on - strand, within CSW01_03705at 758.935 kb on + strand, within CSW01_03705at 758.935 kb on + strand, within CSW01_03705at 758.938 kb on - strand, within CSW01_03705at 758.938 kb on - strand, within CSW01_03705at 758.940 kb on + strand, within CSW01_03705at 758.940 kb on + strand, within CSW01_03705at 758.943 kb on - strand, within CSW01_03705at 758.987 kb on + strand, within CSW01_03705at 759.010 kb on + strand, within CSW01_03705at 759.028 kb on - strand, within CSW01_03705at 759.079 kb on - strand, within CSW01_03705at 759.134 kb on + strand, within CSW01_03705at 759.135 kb on - strand, within CSW01_03705at 759.137 kb on - strand, within CSW01_03705at 759.161 kb on + strand, within CSW01_03705at 759.169 kb on - strand, within CSW01_03705at 759.205 kb on - strand, within CSW01_03705at 759.253 kb on + strand, within CSW01_03705at 759.284 kb on - strand, within CSW01_03705at 759.289 kb on + strand, within CSW01_03705at 759.337 kb on + strand, within CSW01_03705at 759.337 kb on + strand, within CSW01_03705at 759.345 kb on - strand, within CSW01_03705at 759.355 kb on - strand, within CSW01_03705at 759.370 kb on - strand, within CSW01_03705at 759.473 kb on + strand, within CSW01_03705at 759.481 kb on - strand, within CSW01_03705at 759.493 kb on + strand, within CSW01_03705at 759.630 kb on + strand, within CSW01_03705at 759.650 kb on + strand, within CSW01_03705at 759.654 kb on + strand, within CSW01_03705at 759.654 kb on + strand, within CSW01_03705at 759.662 kb on - strand, within CSW01_03705at 759.705 kb on + strand, within CSW01_03705at 759.725 kb on - strand, within CSW01_03705at 759.726 kb on - strand, within CSW01_03705at 759.730 kb on + strand, within CSW01_03705at 759.772 kb on + strand, within CSW01_03705at 759.798 kb on + strand, within CSW01_03705at 759.808 kb on + strand, within CSW01_03705at 759.919 kb on - strand, within CSW01_03705at 760.050 kb on - strand, within CSW01_03705at 760.124 kb on - strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.260 kb on + strand, within CSW01_03705at 760.268 kb on - strand, within CSW01_03705at 760.268 kb on - strand, within CSW01_03705at 760.268 kb on - strand, within CSW01_03705at 760.268 kb on - strand, within CSW01_03705at 760.268 kb on - strand, within CSW01_03705at 760.278 kb on + strand, within CSW01_03705at 760.300 kb on + strand, within CSW01_03705at 760.338 kb on + strand, within CSW01_03705at 760.351 kb on + strand, within CSW01_03705at 760.351 kb on + strand, within CSW01_03705at 760.366 kb on + strand, within CSW01_03705at 760.373 kb on - strand, within CSW01_03705at 760.374 kb on - strand, within CSW01_03705at 760.419 kb on + strand, within CSW01_03705at 760.419 kb on + strand, within CSW01_03705at 760.419 kb on - strand, within CSW01_03705at 760.427 kb on - strand, within CSW01_03705at 760.427 kb on - strand, within CSW01_03705at 760.427 kb on - strand, within CSW01_03705at 760.427 kb on - strand, within CSW01_03705at 760.427 kb on - strand, within CSW01_03705at 760.653 kb on - strand, within CSW01_03705at 760.690 kb on + strand, within CSW01_03705at 760.697 kb on + strand, within CSW01_03705at 760.712 kb on + strand, within CSW01_03705at 760.742 kb on + strandat 760.750 kb on - strandat 760.750 kb on - strandat 760.770 kb on + strandat 760.856 kb on - strandat 760.937 kb on - strandat 761.196 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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757,429 - CSW01_03695 0.86 -3.4
757,517 - -0.0
757,520 + -2.4
757,520 + -2.7
757,520 + -1.9
757,520 + -1.4
757,528 - -1.6
757,528 - -0.5
757,528 - -2.7
757,528 - -1.2
757,530 - -2.1
757,648 + CSW01_03700 0.11 -0.8
757,648 + CSW01_03700 0.11 +1.2
757,659 + CSW01_03700 0.12 +0.9
757,660 + CSW01_03700 0.12 +0.4
757,660 + CSW01_03700 0.12 -2.7
757,660 + CSW01_03700 0.12 +0.8
757,660 + CSW01_03700 0.12 +0.7
757,667 - CSW01_03700 0.13 -2.4
757,668 - CSW01_03700 0.13 -0.0
757,668 - CSW01_03700 0.13 -1.7
757,668 - CSW01_03700 0.13 +0.2
757,668 - CSW01_03700 0.13 -0.7
757,668 - CSW01_03700 0.13 -4.2
757,679 - CSW01_03700 0.15 -0.1
757,687 - CSW01_03700 0.16 -2.3
757,695 + CSW01_03700 0.17 +0.7
757,698 - CSW01_03700 0.17 +0.3
757,759 + CSW01_03700 0.26 -1.2
757,790 - CSW01_03700 0.30 -2.0
757,823 - CSW01_03700 0.35 +2.1
757,848 - CSW01_03700 0.38 +0.8
757,854 + CSW01_03700 0.39 -0.2
757,919 + CSW01_03700 0.48 -3.3
757,938 + CSW01_03700 0.51 -0.0
757,965 + CSW01_03700 0.54 -3.4
757,965 + CSW01_03700 0.54 -0.1
757,965 + CSW01_03700 0.54 +0.8
757,965 + CSW01_03700 0.54 -1.8
757,965 + CSW01_03700 0.54 +1.1
757,973 - CSW01_03700 0.55 +0.7
758,006 - CSW01_03700 0.60 -1.4
758,187 + CSW01_03700 0.85 +0.2
758,189 - CSW01_03700 0.85 -1.8
758,207 - CSW01_03700 0.88 -0.2
758,209 - CSW01_03700 0.88 -2.2
758,289 + -0.4
758,289 + -2.0
758,289 - -2.1
758,295 + +1.6
758,295 + -2.7
758,297 - +0.6
758,402 + +0.2
758,472 + -1.3
758,486 + +1.7
758,509 + +1.4
758,525 - -0.1
758,574 + -1.9
758,579 + -2.3
758,664 + -1.6
758,667 - +0.8
758,726 - CSW01_03705 0.12 -0.7
758,728 + CSW01_03705 0.12 +0.5
758,736 - CSW01_03705 0.12 +2.0
758,782 + CSW01_03705 0.14 +1.0
758,801 + CSW01_03705 0.15 +2.6
758,801 + CSW01_03705 0.15 +0.6
758,809 - CSW01_03705 0.15 +1.9
758,809 - CSW01_03705 0.15 +0.1
758,809 - CSW01_03705 0.15 -0.6
758,809 - CSW01_03705 0.15 -0.2
758,855 + CSW01_03705 0.17 -0.6
758,892 - CSW01_03705 0.18 +1.2
758,920 - CSW01_03705 0.19 -0.1
758,926 - CSW01_03705 0.20 +0.1
758,935 + CSW01_03705 0.20 -3.1
758,935 + CSW01_03705 0.20 -1.6
758,938 - CSW01_03705 0.20 +1.5
758,938 - CSW01_03705 0.20 +1.5
758,940 + CSW01_03705 0.20 -2.0
758,940 + CSW01_03705 0.20 +0.3
758,943 - CSW01_03705 0.20 -0.6
758,987 + CSW01_03705 0.22 -0.0
759,010 + CSW01_03705 0.23 -0.8
759,028 - CSW01_03705 0.24 +1.1
759,079 - CSW01_03705 0.26 +0.9
759,134 + CSW01_03705 0.28 +0.9
759,135 - CSW01_03705 0.28 +2.5
759,137 - CSW01_03705 0.28 +0.6
759,161 + CSW01_03705 0.29 -3.5
759,169 - CSW01_03705 0.29 +0.5
759,205 - CSW01_03705 0.31 -1.5
759,253 + CSW01_03705 0.32 +2.3
759,284 - CSW01_03705 0.34 +1.4
759,289 + CSW01_03705 0.34 -2.4
759,337 + CSW01_03705 0.36 +0.8
759,337 + CSW01_03705 0.36 -0.5
759,345 - CSW01_03705 0.36 +0.9
759,355 - CSW01_03705 0.36 -0.5
759,370 - CSW01_03705 0.37 +1.7
759,473 + CSW01_03705 0.41 -3.5
759,481 - CSW01_03705 0.41 +0.9
759,493 + CSW01_03705 0.42 -0.1
759,630 + CSW01_03705 0.47 -0.8
759,650 + CSW01_03705 0.48 +1.9
759,654 + CSW01_03705 0.48 +0.1
759,654 + CSW01_03705 0.48 +0.8
759,662 - CSW01_03705 0.48 -1.0
759,705 + CSW01_03705 0.50 -0.4
759,725 - CSW01_03705 0.51 +0.6
759,726 - CSW01_03705 0.51 +0.7
759,730 + CSW01_03705 0.51 +0.6
759,772 + CSW01_03705 0.53 -1.0
759,798 + CSW01_03705 0.54 +1.0
759,808 + CSW01_03705 0.54 -0.4
759,919 - CSW01_03705 0.58 -0.4
760,050 - CSW01_03705 0.63 +0.4
760,124 - CSW01_03705 0.66 -0.3
760,260 + CSW01_03705 0.72 -1.2
760,260 + CSW01_03705 0.72 -3.3
760,260 + CSW01_03705 0.72 +2.0
760,260 + CSW01_03705 0.72 +1.0
760,260 + CSW01_03705 0.72 -0.3
760,260 + CSW01_03705 0.72 +1.4
760,260 + CSW01_03705 0.72 +0.3
760,260 + CSW01_03705 0.72 +0.2
760,260 + CSW01_03705 0.72 +1.0
760,260 + CSW01_03705 0.72 +1.1
760,260 + CSW01_03705 0.72 +0.3
760,260 + CSW01_03705 0.72 +0.7
760,260 + CSW01_03705 0.72 -1.7
760,260 + CSW01_03705 0.72 +0.3
760,260 + CSW01_03705 0.72 -0.4
760,260 + CSW01_03705 0.72 +1.6
760,260 + CSW01_03705 0.72 +0.5
760,260 + CSW01_03705 0.72 -0.6
760,260 + CSW01_03705 0.72 -0.0
760,260 + CSW01_03705 0.72 -1.6
760,268 - CSW01_03705 0.72 +0.1
760,268 - CSW01_03705 0.72 -2.6
760,268 - CSW01_03705 0.72 -2.6
760,268 - CSW01_03705 0.72 +0.5
760,268 - CSW01_03705 0.72 -2.7
760,278 + CSW01_03705 0.72 +0.9
760,300 + CSW01_03705 0.73 -1.1
760,338 + CSW01_03705 0.75 +0.3
760,351 + CSW01_03705 0.75 -0.6
760,351 + CSW01_03705 0.75 -0.8
760,366 + CSW01_03705 0.76 +0.9
760,373 - CSW01_03705 0.76 +0.9
760,374 - CSW01_03705 0.76 -0.9
760,419 + CSW01_03705 0.78 +1.4
760,419 + CSW01_03705 0.78 -0.3
760,419 - CSW01_03705 0.78 -0.2
760,427 - CSW01_03705 0.78 +0.3
760,427 - CSW01_03705 0.78 -0.4
760,427 - CSW01_03705 0.78 +0.1
760,427 - CSW01_03705 0.78 +0.7
760,427 - CSW01_03705 0.78 +0.2
760,653 - CSW01_03705 0.87 -1.3
760,690 + CSW01_03705 0.88 +0.6
760,697 + CSW01_03705 0.89 -0.3
760,712 + CSW01_03705 0.89 -0.9
760,742 + -0.2
760,750 - +1.7
760,750 - +0.4
760,770 + +0.6
760,856 - -1.0
760,937 - -3.1
761,196 + -0.4

Or see this region's nucleotide sequence