Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_03500 and CSW01_03505 are separated by 577 nucleotides CSW01_03505 and CSW01_03510 are separated by 37 nucleotides
CSW01_03500: CSW01_03500 - sigma-54-dependent Fis family transcriptional regulator, at 711,139 to 712,473
_03500
CSW01_03505: CSW01_03505 - hypothetical protein, at 713,051 to 713,302
_03505
CSW01_03510: CSW01_03510 - NADP(H)-dependent aldo-keto reductase, at 713,340 to 714,398
_03510
Position (kb) 713
714 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 712.131 kb on + strand, within CSW01_03500 at 712.131 kb on + strand, within CSW01_03500 at 712.182 kb on - strand, within CSW01_03500 at 712.182 kb on - strand, within CSW01_03500 at 712.276 kb on - strand, within CSW01_03500 at 712.290 kb on + strand, within CSW01_03500 at 712.475 kb on - strand at 712.557 kb on + strand at 712.806 kb on + strand at 712.950 kb on + strand at 712.988 kb on - strand at 713.094 kb on + strand, within CSW01_03505 at 713.102 kb on - strand, within CSW01_03505 at 713.102 kb on - strand, within CSW01_03505 at 713.145 kb on - strand, within CSW01_03505 at 713.228 kb on - strand, within CSW01_03505 at 713.275 kb on + strand, within CSW01_03505 at 713.275 kb on + strand, within CSW01_03505 at 713.310 kb on + strand at 713.318 kb on + strand at 713.318 kb on - strand at 713.328 kb on - strand at 713.553 kb on + strand, within CSW01_03510 at 713.579 kb on + strand, within CSW01_03510 at 713.611 kb on + strand, within CSW01_03510 at 713.612 kb on - strand, within CSW01_03510 at 713.617 kb on - strand, within CSW01_03510 at 713.631 kb on - strand, within CSW01_03510 at 713.631 kb on - strand, within CSW01_03510 at 713.693 kb on + strand, within CSW01_03510 at 713.693 kb on + strand, within CSW01_03510 at 713.693 kb on + strand, within CSW01_03510 at 713.693 kb on + strand, within CSW01_03510 at 713.740 kb on - strand, within CSW01_03510 at 713.779 kb on + strand, within CSW01_03510 at 713.797 kb on - strand, within CSW01_03510 at 713.827 kb on + strand, within CSW01_03510 at 713.885 kb on - strand, within CSW01_03510 at 713.902 kb on - strand, within CSW01_03510 at 713.912 kb on + strand, within CSW01_03510 at 713.935 kb on + strand, within CSW01_03510 at 713.941 kb on + strand, within CSW01_03510 at 714.156 kb on - strand, within CSW01_03510 at 714.181 kb on + strand, within CSW01_03510 at 714.192 kb on + strand, within CSW01_03510 at 714.222 kb on - strand, within CSW01_03510 at 714.272 kb on + strand, within CSW01_03510 at 714.272 kb on + strand, within CSW01_03510 at 714.272 kb on + strand, within CSW01_03510 at 714.272 kb on + strand, within CSW01_03510
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 712,131 + CSW01_03500 0.74 -0.6 712,131 + CSW01_03500 0.74 -0.8 712,182 - CSW01_03500 0.78 +0.7 712,182 - CSW01_03500 0.78 -1.9 712,276 - CSW01_03500 0.85 +0.5 712,290 + CSW01_03500 0.86 -2.1 712,475 - +0.2 712,557 + +0.4 712,806 + -0.7 712,950 + +0.6 712,988 - +0.6 713,094 + CSW01_03505 0.17 -0.6 713,102 - CSW01_03505 0.20 -4.2 713,102 - CSW01_03505 0.20 -0.6 713,145 - CSW01_03505 0.37 -1.7 713,228 - CSW01_03505 0.70 -4.1 713,275 + CSW01_03505 0.89 -0.6 713,275 + CSW01_03505 0.89 +0.2 713,310 + -1.9 713,318 + -0.3 713,318 - -0.2 713,328 - -1.2 713,553 + CSW01_03510 0.20 +0.3 713,579 + CSW01_03510 0.23 +0.1 713,611 + CSW01_03510 0.26 -0.8 713,612 - CSW01_03510 0.26 -1.2 713,617 - CSW01_03510 0.26 +0.0 713,631 - CSW01_03510 0.27 +0.8 713,631 - CSW01_03510 0.27 -1.6 713,693 + CSW01_03510 0.33 -0.5 713,693 + CSW01_03510 0.33 +0.8 713,693 + CSW01_03510 0.33 -2.5 713,693 + CSW01_03510 0.33 -0.6 713,740 - CSW01_03510 0.38 +0.8 713,779 + CSW01_03510 0.41 +0.1 713,797 - CSW01_03510 0.43 +1.2 713,827 + CSW01_03510 0.46 -1.5 713,885 - CSW01_03510 0.51 -2.2 713,902 - CSW01_03510 0.53 +1.0 713,912 + CSW01_03510 0.54 +0.7 713,935 + CSW01_03510 0.56 -0.2 713,941 + CSW01_03510 0.57 -2.5 714,156 - CSW01_03510 0.77 +0.7 714,181 + CSW01_03510 0.79 +0.3 714,192 + CSW01_03510 0.80 +0.9 714,222 - CSW01_03510 0.83 +0.9 714,272 + CSW01_03510 0.88 -0.7 714,272 + CSW01_03510 0.88 -0.0 714,272 + CSW01_03510 0.88 +1.7 714,272 + CSW01_03510 0.88 +2.1
Or see this region's nucleotide sequence