Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03465

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03450 and CSW01_03455 are separated by 110 nucleotidesCSW01_03455 and CSW01_03460 overlap by 40 nucleotidesCSW01_03460 and CSW01_03465 overlap by 12 nucleotidesCSW01_03465 and CSW01_03470 are separated by 209 nucleotides CSW01_03450: CSW01_03450 - N-acetyltransferase, at 698,849 to 699,400 _03450 CSW01_03455: CSW01_03455 - DNA polymerase III subunit psi, at 699,511 to 699,918 _03455 CSW01_03460: CSW01_03460 - ribosomal-protein-alanine N-acetyltransferase, at 699,879 to 700,364 _03460 CSW01_03465: CSW01_03465 - GGDEF-domain containing protein, at 700,353 to 702,410 _03465 CSW01_03470: CSW01_03470 - peptide chain release factor 3, at 702,620 to 704,209 _03470 Position (kb) 700 701 702 703Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 699.376 kb on - strandat 699.489 kb on + strandat 699.501 kb on + strandat 699.501 kb on + strandat 699.514 kb on - strandat 699.595 kb on - strand, within CSW01_03455at 699.888 kb on + strandat 699.906 kb on - strandat 699.906 kb on - strandat 699.989 kb on - strand, within CSW01_03460at 700.011 kb on + strand, within CSW01_03460at 700.026 kb on - strand, within CSW01_03460at 700.099 kb on - strand, within CSW01_03460at 700.153 kb on - strand, within CSW01_03460at 700.159 kb on - strand, within CSW01_03460at 700.160 kb on - strand, within CSW01_03460at 700.193 kb on - strand, within CSW01_03460at 700.219 kb on + strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.227 kb on - strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.259 kb on + strand, within CSW01_03460at 700.267 kb on - strand, within CSW01_03460at 700.267 kb on - strand, within CSW01_03460at 700.299 kb on + strand, within CSW01_03460at 700.301 kb on + strand, within CSW01_03460at 700.301 kb on + strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.309 kb on - strand, within CSW01_03460at 700.319 kb on + strandat 700.319 kb on + strandat 700.327 kb on - strandat 700.340 kb on + strandat 700.470 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.505 kb on + strandat 700.513 kb on - strandat 700.513 kb on - strandat 700.513 kb on - strandat 700.513 kb on - strandat 700.515 kb on + strandat 700.517 kb on + strandat 700.571 kb on - strand, within CSW01_03465at 700.663 kb on + strand, within CSW01_03465at 700.663 kb on + strand, within CSW01_03465at 700.676 kb on - strand, within CSW01_03465at 700.677 kb on + strand, within CSW01_03465at 700.678 kb on + strand, within CSW01_03465at 700.685 kb on - strand, within CSW01_03465at 700.686 kb on - strand, within CSW01_03465at 700.687 kb on + strand, within CSW01_03465at 700.695 kb on - strand, within CSW01_03465at 700.695 kb on - strand, within CSW01_03465at 700.762 kb on - strand, within CSW01_03465at 700.776 kb on + strand, within CSW01_03465at 700.784 kb on - strand, within CSW01_03465at 700.842 kb on - strand, within CSW01_03465at 700.847 kb on + strand, within CSW01_03465at 700.879 kb on - strand, within CSW01_03465at 700.879 kb on - strand, within CSW01_03465at 700.879 kb on - strand, within CSW01_03465at 701.108 kb on - strand, within CSW01_03465at 701.108 kb on - strand, within CSW01_03465at 701.148 kb on + strand, within CSW01_03465at 701.239 kb on + strand, within CSW01_03465at 701.247 kb on - strand, within CSW01_03465at 701.252 kb on - strand, within CSW01_03465at 701.258 kb on - strand, within CSW01_03465at 701.329 kb on + strand, within CSW01_03465at 701.337 kb on - strand, within CSW01_03465at 701.361 kb on - strand, within CSW01_03465at 701.424 kb on + strand, within CSW01_03465at 701.430 kb on - strand, within CSW01_03465at 701.432 kb on - strand, within CSW01_03465at 701.501 kb on - strand, within CSW01_03465at 701.514 kb on - strand, within CSW01_03465at 701.529 kb on + strand, within CSW01_03465at 701.552 kb on - strand, within CSW01_03465at 701.554 kb on + strand, within CSW01_03465at 701.554 kb on + strand, within CSW01_03465at 701.575 kb on + strand, within CSW01_03465at 701.575 kb on + strand, within CSW01_03465at 701.577 kb on + strand, within CSW01_03465at 701.583 kb on - strand, within CSW01_03465at 701.583 kb on - strand, within CSW01_03465at 701.583 kb on - strand, within CSW01_03465at 701.591 kb on - strand, within CSW01_03465at 701.614 kb on + strand, within CSW01_03465at 701.622 kb on - strand, within CSW01_03465at 701.666 kb on + strand, within CSW01_03465at 701.699 kb on + strand, within CSW01_03465at 701.789 kb on + strand, within CSW01_03465at 701.794 kb on + strand, within CSW01_03465at 701.800 kb on - strand, within CSW01_03465at 701.802 kb on - strand, within CSW01_03465at 701.802 kb on - strand, within CSW01_03465at 701.802 kb on - strand, within CSW01_03465at 701.806 kb on + strand, within CSW01_03465at 701.814 kb on - strand, within CSW01_03465at 702.004 kb on - strand, within CSW01_03465at 702.007 kb on + strand, within CSW01_03465at 702.009 kb on - strand, within CSW01_03465at 702.015 kb on - strand, within CSW01_03465at 702.028 kb on + strand, within CSW01_03465at 702.036 kb on - strand, within CSW01_03465at 702.036 kb on - strand, within CSW01_03465at 702.050 kb on + strand, within CSW01_03465at 702.075 kb on + strand, within CSW01_03465at 702.083 kb on - strand, within CSW01_03465at 702.087 kb on - strand, within CSW01_03465at 702.122 kb on - strand, within CSW01_03465at 702.277 kb on + strandat 702.277 kb on + strandat 702.290 kb on - strandat 702.307 kb on - strandat 702.531 kb on + strandat 702.541 kb on + strandat 702.566 kb on - strandat 702.588 kb on - strandat 702.655 kb on - strandat 702.655 kb on - strandat 702.755 kb on + strandat 702.768 kb on + strandat 702.768 kb on + strandat 703.009 kb on - strand, within CSW01_03470at 703.153 kb on - strand, within CSW01_03470at 703.200 kb on + strand, within CSW01_03470at 703.200 kb on + strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.208 kb on - strand, within CSW01_03470at 703.254 kb on + strand, within CSW01_03470at 703.254 kb on + strand, within CSW01_03470at 703.257 kb on - strand, within CSW01_03470at 703.263 kb on - strand, within CSW01_03470at 703.264 kb on + strand, within CSW01_03470at 703.267 kb on - strand, within CSW01_03470at 703.278 kb on + strand, within CSW01_03470at 703.278 kb on + strand, within CSW01_03470at 703.278 kb on + strand, within CSW01_03470at 703.389 kb on + strand, within CSW01_03470at 703.399 kb on + strand, within CSW01_03470

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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699,376 - -1.3
699,489 + +0.0
699,501 + +0.9
699,501 + -0.3
699,514 - -2.5
699,595 - CSW01_03455 0.21 -2.1
699,888 + -3.0
699,906 - +0.2
699,906 - -1.1
699,989 - CSW01_03460 0.23 +1.1
700,011 + CSW01_03460 0.27 -4.9
700,026 - CSW01_03460 0.30 -0.3
700,099 - CSW01_03460 0.45 -1.8
700,153 - CSW01_03460 0.56 -0.8
700,159 - CSW01_03460 0.58 +0.6
700,160 - CSW01_03460 0.58 +0.1
700,193 - CSW01_03460 0.65 +0.0
700,219 + CSW01_03460 0.70 -1.0
700,227 - CSW01_03460 0.72 -0.9
700,227 - CSW01_03460 0.72 +1.4
700,227 - CSW01_03460 0.72 +0.5
700,259 + CSW01_03460 0.78 -0.8
700,259 + CSW01_03460 0.78 -0.5
700,259 + CSW01_03460 0.78 -3.6
700,267 - CSW01_03460 0.80 +3.2
700,267 - CSW01_03460 0.80 -0.1
700,299 + CSW01_03460 0.86 +0.1
700,301 + CSW01_03460 0.87 -2.5
700,301 + CSW01_03460 0.87 +0.2
700,309 - CSW01_03460 0.88 -0.1
700,309 - CSW01_03460 0.88 -0.6
700,309 - CSW01_03460 0.88 -0.5
700,319 + +1.2
700,319 + +0.7
700,327 - +1.2
700,340 + -0.2
700,470 + +0.5
700,505 + +0.1
700,505 + -2.4
700,505 + +0.2
700,505 + -0.2
700,505 + -1.1
700,513 - +0.6
700,513 - +0.9
700,513 - -0.5
700,513 - -0.8
700,515 + -0.1
700,517 + +1.7
700,571 - CSW01_03465 0.11 -2.0
700,663 + CSW01_03465 0.15 +0.8
700,663 + CSW01_03465 0.15 -2.9
700,676 - CSW01_03465 0.16 -1.7
700,677 + CSW01_03465 0.16 +0.2
700,678 + CSW01_03465 0.16 +0.4
700,685 - CSW01_03465 0.16 +1.2
700,686 - CSW01_03465 0.16 +1.7
700,687 + CSW01_03465 0.16 +2.6
700,695 - CSW01_03465 0.17 -0.3
700,695 - CSW01_03465 0.17 +0.2
700,762 - CSW01_03465 0.20 -0.7
700,776 + CSW01_03465 0.21 -2.4
700,784 - CSW01_03465 0.21 +0.6
700,842 - CSW01_03465 0.24 -1.5
700,847 + CSW01_03465 0.24 -0.4
700,879 - CSW01_03465 0.26 +0.4
700,879 - CSW01_03465 0.26 -0.5
700,879 - CSW01_03465 0.26 +0.5
701,108 - CSW01_03465 0.37 -4.0
701,108 - CSW01_03465 0.37 +0.3
701,148 + CSW01_03465 0.39 -0.4
701,239 + CSW01_03465 0.43 -4.5
701,247 - CSW01_03465 0.43 -1.1
701,252 - CSW01_03465 0.44 -0.5
701,258 - CSW01_03465 0.44 -1.3
701,329 + CSW01_03465 0.47 -2.3
701,337 - CSW01_03465 0.48 -0.3
701,361 - CSW01_03465 0.49 -1.1
701,424 + CSW01_03465 0.52 -0.6
701,430 - CSW01_03465 0.52 +1.1
701,432 - CSW01_03465 0.52 -0.2
701,501 - CSW01_03465 0.56 -3.2
701,514 - CSW01_03465 0.56 +0.3
701,529 + CSW01_03465 0.57 +0.6
701,552 - CSW01_03465 0.58 -1.0
701,554 + CSW01_03465 0.58 -2.5
701,554 + CSW01_03465 0.58 +1.9
701,575 + CSW01_03465 0.59 +0.8
701,575 + CSW01_03465 0.59 -0.5
701,577 + CSW01_03465 0.59 +1.4
701,583 - CSW01_03465 0.60 -0.8
701,583 - CSW01_03465 0.60 +1.0
701,583 - CSW01_03465 0.60 +1.1
701,591 - CSW01_03465 0.60 -0.7
701,614 + CSW01_03465 0.61 -2.6
701,622 - CSW01_03465 0.62 -3.7
701,666 + CSW01_03465 0.64 -1.9
701,699 + CSW01_03465 0.65 -2.9
701,789 + CSW01_03465 0.70 -0.5
701,794 + CSW01_03465 0.70 -2.5
701,800 - CSW01_03465 0.70 -0.9
701,802 - CSW01_03465 0.70 -0.1
701,802 - CSW01_03465 0.70 -0.1
701,802 - CSW01_03465 0.70 -1.3
701,806 + CSW01_03465 0.71 -0.5
701,814 - CSW01_03465 0.71 +0.2
702,004 - CSW01_03465 0.80 -1.3
702,007 + CSW01_03465 0.80 -1.8
702,009 - CSW01_03465 0.80 -2.5
702,015 - CSW01_03465 0.81 +0.8
702,028 + CSW01_03465 0.81 -3.0
702,036 - CSW01_03465 0.82 -1.3
702,036 - CSW01_03465 0.82 +1.0
702,050 + CSW01_03465 0.82 -0.2
702,075 + CSW01_03465 0.84 +1.0
702,083 - CSW01_03465 0.84 -3.3
702,087 - CSW01_03465 0.84 -1.8
702,122 - CSW01_03465 0.86 -1.7
702,277 + -2.7
702,277 + -0.8
702,290 - +2.2
702,307 - -3.5
702,531 + +0.2
702,541 + -0.7
702,566 - +0.5
702,588 - +1.5
702,655 - +2.3
702,655 - +3.2
702,755 + +0.8
702,768 + +0.2
702,768 + +2.5
703,009 - CSW01_03470 0.24 +0.2
703,153 - CSW01_03470 0.34 +1.0
703,200 + CSW01_03470 0.36 -1.1
703,200 + CSW01_03470 0.36 -0.5
703,208 - CSW01_03470 0.37 +1.9
703,208 - CSW01_03470 0.37 -1.7
703,208 - CSW01_03470 0.37 +2.7
703,208 - CSW01_03470 0.37 -1.9
703,208 - CSW01_03470 0.37 +1.2
703,254 + CSW01_03470 0.40 +0.3
703,254 + CSW01_03470 0.40 +0.9
703,257 - CSW01_03470 0.40 -0.2
703,263 - CSW01_03470 0.40 -0.8
703,264 + CSW01_03470 0.41 +1.6
703,267 - CSW01_03470 0.41 +1.3
703,278 + CSW01_03470 0.41 -0.4
703,278 + CSW01_03470 0.41 +0.2
703,278 + CSW01_03470 0.41 -0.1
703,389 + CSW01_03470 0.48 +2.5
703,399 + CSW01_03470 0.49 -0.9

Or see this region's nucleotide sequence