Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_03445

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_03440 and CSW01_03445 are separated by 232 nucleotidesCSW01_03445 and CSW01_03450 overlap by 65 nucleotidesCSW01_03450 and CSW01_03455 are separated by 110 nucleotides CSW01_03440: CSW01_03440 - bifunctional diguanylate cyclase/phosphodiesterase, at 696,099 to 698,153 _03440 CSW01_03445: CSW01_03445 - SCP2 domain-containing protein, at 698,386 to 698,913 _03445 CSW01_03450: CSW01_03450 - N-acetyltransferase, at 698,849 to 699,400 _03450 CSW01_03455: CSW01_03455 - DNA polymerase III subunit psi, at 699,511 to 699,918 _03455 CSW01_03460: CSW01_03460 - ribosomal-protein-alanine N-acetyltransferase, at 699,879 to 700,364 _03460 Position (kb) 698 699Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 697.446 kb on + strand, within CSW01_03440at 697.454 kb on - strand, within CSW01_03440at 697.550 kb on - strand, within CSW01_03440at 697.669 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.710 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.732 kb on + strand, within CSW01_03440at 697.734 kb on + strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.740 kb on - strand, within CSW01_03440at 697.797 kb on + strand, within CSW01_03440at 697.821 kb on + strand, within CSW01_03440at 697.904 kb on - strand, within CSW01_03440at 697.980 kb on - strandat 698.035 kb on - strandat 698.080 kb on + strandat 698.124 kb on - strandat 698.139 kb on + strandat 698.147 kb on - strandat 698.147 kb on - strandat 698.194 kb on - strandat 698.207 kb on - strandat 698.230 kb on - strandat 698.284 kb on - strandat 698.346 kb on + strandat 698.496 kb on + strand, within CSW01_03445at 698.496 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.515 kb on + strand, within CSW01_03445at 698.523 kb on - strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.591 kb on + strand, within CSW01_03445at 698.599 kb on - strand, within CSW01_03445at 698.600 kb on - strand, within CSW01_03445at 698.718 kb on + strand, within CSW01_03445at 698.779 kb on + strand, within CSW01_03445at 699.046 kb on + strand, within CSW01_03450at 699.065 kb on + strand, within CSW01_03450at 699.070 kb on + strand, within CSW01_03450at 699.075 kb on + strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.078 kb on - strand, within CSW01_03450at 699.083 kb on - strand, within CSW01_03450at 699.100 kb on - strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.114 kb on + strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.122 kb on - strand, within CSW01_03450at 699.145 kb on - strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.183 kb on + strand, within CSW01_03450at 699.190 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.191 kb on - strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.192 kb on + strand, within CSW01_03450at 699.200 kb on - strand, within CSW01_03450at 699.205 kb on + strand, within CSW01_03450at 699.251 kb on + strand, within CSW01_03450at 699.286 kb on + strand, within CSW01_03450at 699.294 kb on - strand, within CSW01_03450at 699.315 kb on - strand, within CSW01_03450at 699.330 kb on + strand, within CSW01_03450at 699.376 kb on - strandat 699.489 kb on + strandat 699.501 kb on + strandat 699.501 kb on + strandat 699.514 kb on - strandat 699.595 kb on - strand, within CSW01_03455at 699.888 kb on + strandat 699.906 kb on - strandat 699.906 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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697,446 + CSW01_03440 0.66 -0.5
697,454 - CSW01_03440 0.66 -3.2
697,550 - CSW01_03440 0.71 -1.0
697,669 + CSW01_03440 0.76 +1.6
697,710 + CSW01_03440 0.78 -2.2
697,710 + CSW01_03440 0.78 +0.5
697,710 + CSW01_03440 0.78 +1.4
697,732 + CSW01_03440 0.79 +0.8
697,732 + CSW01_03440 0.79 -2.5
697,732 + CSW01_03440 0.79 -2.1
697,732 + CSW01_03440 0.79 -0.6
697,732 + CSW01_03440 0.79 +0.3
697,732 + CSW01_03440 0.79 -3.3
697,732 + CSW01_03440 0.79 -3.4
697,732 + CSW01_03440 0.79 -1.4
697,734 + CSW01_03440 0.80 +1.1
697,740 - CSW01_03440 0.80 -1.8
697,740 - CSW01_03440 0.80 +0.1
697,740 - CSW01_03440 0.80 +0.3
697,740 - CSW01_03440 0.80 +0.7
697,740 - CSW01_03440 0.80 -3.3
697,740 - CSW01_03440 0.80 -0.7
697,740 - CSW01_03440 0.80 -0.8
697,797 + CSW01_03440 0.83 -0.6
697,821 + CSW01_03440 0.84 -0.0
697,904 - CSW01_03440 0.88 +2.2
697,980 - +1.3
698,035 - +0.5
698,080 + -1.3
698,124 - +1.4
698,139 + -1.5
698,147 - -2.7
698,147 - +0.4
698,194 - +1.4
698,207 - -2.2
698,230 - -0.4
698,284 - -0.3
698,346 + +2.3
698,496 + CSW01_03445 0.21 -3.3
698,496 + CSW01_03445 0.21 -0.2
698,515 + CSW01_03445 0.24 +0.9
698,515 + CSW01_03445 0.24 +1.0
698,523 - CSW01_03445 0.26 -1.0
698,591 + CSW01_03445 0.39 -0.2
698,591 + CSW01_03445 0.39 +0.9
698,599 - CSW01_03445 0.40 +0.7
698,600 - CSW01_03445 0.41 -1.3
698,718 + CSW01_03445 0.63 -0.6
698,779 + CSW01_03445 0.74 -0.7
699,046 + CSW01_03450 0.36 +0.5
699,065 + CSW01_03450 0.39 +1.6
699,070 + CSW01_03450 0.40 +0.2
699,075 + CSW01_03450 0.41 +2.1
699,078 - CSW01_03450 0.41 -2.4
699,078 - CSW01_03450 0.41 +0.3
699,083 - CSW01_03450 0.42 -1.2
699,100 - CSW01_03450 0.45 -4.7
699,114 + CSW01_03450 0.48 -0.4
699,114 + CSW01_03450 0.48 +0.3
699,114 + CSW01_03450 0.48 +0.9
699,114 + CSW01_03450 0.48 +1.1
699,114 + CSW01_03450 0.48 -0.6
699,114 + CSW01_03450 0.48 -4.3
699,114 + CSW01_03450 0.48 -1.2
699,114 + CSW01_03450 0.48 +0.8
699,114 + CSW01_03450 0.48 -2.4
699,122 - CSW01_03450 0.49 -3.5
699,122 - CSW01_03450 0.49 -1.7
699,122 - CSW01_03450 0.49 +1.8
699,122 - CSW01_03450 0.49 +0.6
699,122 - CSW01_03450 0.49 +1.1
699,145 - CSW01_03450 0.54 +1.4
699,183 + CSW01_03450 0.61 +0.0
699,183 + CSW01_03450 0.61 +0.2
699,190 - CSW01_03450 0.62 +0.5
699,191 - CSW01_03450 0.62 -0.7
699,191 - CSW01_03450 0.62 -2.6
699,191 - CSW01_03450 0.62 +1.7
699,192 + CSW01_03450 0.62 +1.5
699,192 + CSW01_03450 0.62 +1.2
699,200 - CSW01_03450 0.64 -0.8
699,205 + CSW01_03450 0.64 -2.1
699,251 + CSW01_03450 0.73 -0.1
699,286 + CSW01_03450 0.79 +0.1
699,294 - CSW01_03450 0.81 +0.7
699,315 - CSW01_03450 0.84 +0.3
699,330 + CSW01_03450 0.87 -1.0
699,376 - -1.3
699,489 + +0.0
699,501 + +0.9
699,501 + -0.3
699,514 - -2.5
699,595 - CSW01_03455 0.21 -2.1
699,888 + -3.0
699,906 - +0.2
699,906 - -1.1

Or see this region's nucleotide sequence