Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02985 and CSW01_02990 are separated by 212 nucleotides CSW01_02990 and CSW01_02995 are separated by 235 nucleotides CSW01_02995 and CSW01_03000 are separated by 27 nucleotides
CSW01_02985: CSW01_02985 - inner membrane protein YpjD, at 592,399 to 593,193
_02985
CSW01_02990: CSW01_02990 - signal recognition particle protein, at 593,406 to 594,791
_02990
CSW01_02995: CSW01_02995 - 30S ribosomal protein S16, at 595,027 to 595,275
_02995
CSW01_03000: CSW01_03000 - ribosome maturation factor RimM, at 595,303 to 595,857
_03000
Position (kb) 593
594
595 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 592.411 kb on + strand at 592.447 kb on + strand at 592.495 kb on + strand, within CSW01_02985 at 592.550 kb on + strand, within CSW01_02985 at 592.606 kb on + strand, within CSW01_02985 at 592.753 kb on + strand, within CSW01_02985 at 592.765 kb on + strand, within CSW01_02985 at 592.780 kb on + strand, within CSW01_02985 at 592.783 kb on - strand, within CSW01_02985 at 592.798 kb on + strand, within CSW01_02985 at 592.808 kb on + strand, within CSW01_02985 at 592.808 kb on + strand, within CSW01_02985 at 592.870 kb on + strand, within CSW01_02985 at 592.959 kb on + strand, within CSW01_02985 at 592.962 kb on - strand, within CSW01_02985 at 593.029 kb on - strand, within CSW01_02985 at 593.029 kb on - strand, within CSW01_02985 at 593.029 kb on - strand, within CSW01_02985 at 593.067 kb on - strand, within CSW01_02985 at 593.136 kb on - strand at 593.161 kb on - strand at 593.161 kb on - strand at 593.196 kb on - strand at 593.196 kb on - strand at 593.196 kb on - strand at 593.214 kb on - strand at 593.219 kb on - strand at 593.219 kb on - strand at 593.219 kb on - strand at 593.236 kb on + strand at 593.236 kb on + strand at 593.239 kb on - strand at 593.249 kb on - strand at 593.254 kb on + strand at 593.257 kb on - strand at 593.288 kb on - strand at 593.337 kb on + strand at 593.337 kb on + strand at 593.344 kb on - strand at 593.345 kb on - strand at 593.345 kb on - strand at 593.345 kb on - strand at 593.345 kb on - strand at 593.345 kb on - strand at 593.355 kb on + strand at 593.369 kb on - strand at 594.863 kb on - strand at 594.865 kb on + strand at 594.865 kb on + strand at 594.865 kb on + strand at 594.873 kb on - strand at 594.873 kb on - strand at 594.873 kb on - strand at 594.873 kb on - strand at 594.873 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 592,411 + -0.1 592,447 + +0.5 592,495 + CSW01_02985 0.12 -0.9 592,550 + CSW01_02985 0.19 -0.2 592,606 + CSW01_02985 0.26 -3.0 592,753 + CSW01_02985 0.45 +1.1 592,765 + CSW01_02985 0.46 +0.1 592,780 + CSW01_02985 0.48 -0.3 592,783 - CSW01_02985 0.48 -2.9 592,798 + CSW01_02985 0.50 +0.4 592,808 + CSW01_02985 0.51 -0.8 592,808 + CSW01_02985 0.51 +0.4 592,870 + CSW01_02985 0.59 -2.8 592,959 + CSW01_02985 0.70 -3.7 592,962 - CSW01_02985 0.71 +1.2 593,029 - CSW01_02985 0.79 -0.2 593,029 - CSW01_02985 0.79 -3.0 593,029 - CSW01_02985 0.79 +0.2 593,067 - CSW01_02985 0.84 +0.9 593,136 - -0.0 593,161 - -0.6 593,161 - -1.1 593,196 - -1.4 593,196 - +0.7 593,196 - +1.5 593,214 - -2.3 593,219 - +0.3 593,219 - -2.0 593,219 - -0.3 593,236 + +0.8 593,236 + -3.4 593,239 - -0.6 593,249 - -2.4 593,254 + +1.1 593,257 - +1.1 593,288 - -0.0 593,337 + +0.3 593,337 + -0.3 593,344 - -0.9 593,345 - -0.4 593,345 - -2.4 593,345 - +0.9 593,345 - -0.2 593,345 - +0.2 593,355 + +0.5 593,369 - -2.0 594,863 - -1.3 594,865 + -0.4 594,865 + -2.3 594,865 + +1.7 594,873 - +0.4 594,873 - -1.0 594,873 - -4.5 594,873 - +0.4 594,873 - -0.3
Or see this region's nucleotide sequence