Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02590 and CSW01_02595 are separated by 256 nucleotides CSW01_02595 and CSW01_02600 are separated by 761 nucleotides
CSW01_02590: CSW01_02590 - ABC transporter substrate-binding protein, at 518,038 to 519,117
_02590
CSW01_02595: CSW01_02595 - hemolysin, at 519,374 to 521,134
_02595
CSW01_02600: CSW01_02600 - DUF3732 domain-containing protein, at 521,896 to 523,857
_02600
Position (kb) 519
520
521
522 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 518.449 kb on - strand, within CSW01_02590 at 518.451 kb on + strand, within CSW01_02590 at 518.451 kb on + strand, within CSW01_02590 at 518.460 kb on - strand, within CSW01_02590 at 518.460 kb on - strand, within CSW01_02590 at 518.471 kb on - strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.507 kb on + strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.515 kb on - strand, within CSW01_02590 at 518.538 kb on - strand, within CSW01_02590 at 518.560 kb on + strand, within CSW01_02590 at 518.589 kb on + strand, within CSW01_02590 at 518.674 kb on + strand, within CSW01_02590 at 518.681 kb on + strand, within CSW01_02590 at 518.683 kb on + strand, within CSW01_02590 at 518.688 kb on - strand, within CSW01_02590 at 518.693 kb on + strand, within CSW01_02590 at 518.701 kb on - strand, within CSW01_02590 at 518.701 kb on - strand, within CSW01_02590 at 518.701 kb on - strand, within CSW01_02590 at 518.701 kb on - strand, within CSW01_02590 at 518.701 kb on - strand, within CSW01_02590 at 518.751 kb on - strand, within CSW01_02590 at 518.751 kb on - strand, within CSW01_02590 at 518.756 kb on - strand, within CSW01_02590 at 518.756 kb on - strand, within CSW01_02590 at 518.780 kb on - strand, within CSW01_02590 at 518.822 kb on + strand, within CSW01_02590 at 518.830 kb on - strand, within CSW01_02590 at 518.860 kb on - strand, within CSW01_02590 at 518.875 kb on + strand, within CSW01_02590 at 518.880 kb on - strand, within CSW01_02590 at 518.904 kb on - strand, within CSW01_02590 at 518.976 kb on + strand, within CSW01_02590 at 518.976 kb on + strand, within CSW01_02590 at 518.976 kb on + strand, within CSW01_02590 at 518.984 kb on - strand, within CSW01_02590 at 518.984 kb on - strand, within CSW01_02590 at 518.984 kb on - strand, within CSW01_02590 at 518.984 kb on - strand, within CSW01_02590 at 518.999 kb on - strand, within CSW01_02590 at 519.032 kb on + strand at 519.040 kb on - strand at 519.049 kb on + strand at 519.049 kb on + strand at 519.057 kb on - strand at 519.061 kb on + strand at 519.066 kb on + strand at 519.066 kb on + strand at 519.073 kb on + strand at 519.074 kb on - strand at 519.074 kb on - strand at 519.142 kb on + strand at 519.160 kb on - strand at 519.338 kb on - strand at 519.358 kb on + strand at 519.371 kb on + strand at 519.379 kb on - strand at 519.400 kb on + strand at 519.417 kb on + strand at 519.422 kb on + strand at 519.439 kb on + strand at 519.517 kb on + strand at 519.525 kb on - strand at 519.544 kb on + strand at 519.616 kb on - strand, within CSW01_02595 at 519.653 kb on + strand, within CSW01_02595 at 519.680 kb on + strand, within CSW01_02595 at 519.773 kb on - strand, within CSW01_02595 at 519.803 kb on + strand, within CSW01_02595 at 519.895 kb on - strand, within CSW01_02595 at 519.938 kb on + strand, within CSW01_02595 at 519.946 kb on - strand, within CSW01_02595 at 520.008 kb on - strand, within CSW01_02595 at 520.020 kb on - strand, within CSW01_02595 at 520.029 kb on - strand, within CSW01_02595 at 520.030 kb on - strand, within CSW01_02595 at 520.189 kb on - strand, within CSW01_02595 at 520.194 kb on + strand, within CSW01_02595 at 520.194 kb on + strand, within CSW01_02595 at 520.194 kb on + strand, within CSW01_02595 at 520.202 kb on - strand, within CSW01_02595 at 520.202 kb on - strand, within CSW01_02595 at 520.225 kb on + strand, within CSW01_02595 at 520.236 kb on + strand, within CSW01_02595 at 520.236 kb on + strand, within CSW01_02595 at 520.236 kb on + strand, within CSW01_02595 at 520.236 kb on + strand, within CSW01_02595 at 520.244 kb on - strand, within CSW01_02595 at 520.244 kb on - strand, within CSW01_02595 at 520.267 kb on + strand, within CSW01_02595 at 520.333 kb on + strand, within CSW01_02595 at 520.335 kb on + strand, within CSW01_02595 at 520.335 kb on + strand, within CSW01_02595 at 520.341 kb on - strand, within CSW01_02595 at 520.341 kb on - strand, within CSW01_02595 at 520.402 kb on + strand, within CSW01_02595 at 520.410 kb on - strand, within CSW01_02595 at 520.410 kb on - strand, within CSW01_02595 at 520.412 kb on - strand, within CSW01_02595 at 520.450 kb on - strand, within CSW01_02595 at 520.468 kb on + strand, within CSW01_02595 at 520.480 kb on + strand, within CSW01_02595 at 520.480 kb on + strand, within CSW01_02595 at 520.488 kb on - strand, within CSW01_02595 at 520.488 kb on - strand, within CSW01_02595 at 520.503 kb on - strand, within CSW01_02595 at 520.668 kb on + strand, within CSW01_02595 at 520.752 kb on + strand, within CSW01_02595 at 520.760 kb on - strand, within CSW01_02595 at 520.873 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.883 kb on + strand, within CSW01_02595 at 520.891 kb on - strand, within CSW01_02595 at 520.891 kb on - strand, within CSW01_02595 at 520.891 kb on - strand, within CSW01_02595 at 520.891 kb on - strand, within CSW01_02595 at 520.891 kb on - strand, within CSW01_02595 at 520.924 kb on - strand, within CSW01_02595 at 520.932 kb on + strand, within CSW01_02595 at 520.932 kb on + strand, within CSW01_02595 at 520.932 kb on + strand, within CSW01_02595 at 520.940 kb on - strand, within CSW01_02595 at 520.946 kb on + strand, within CSW01_02595 at 521.005 kb on - strand at 521.048 kb on + strand at 521.056 kb on - strand at 521.140 kb on + strand at 521.148 kb on - strand at 521.173 kb on - strand at 521.196 kb on + strand at 521.196 kb on + strand at 521.204 kb on - strand at 521.229 kb on - strand at 521.248 kb on - strand at 521.368 kb on - strand at 521.398 kb on + strand at 521.398 kb on + strand at 521.406 kb on + strand at 521.406 kb on - strand at 521.414 kb on - strand at 521.430 kb on + strand at 521.438 kb on - strand at 521.464 kb on + strand at 521.476 kb on + strand at 521.489 kb on + strand at 521.489 kb on + strand at 521.489 kb on + strand at 521.489 kb on + strand at 521.489 kb on + strand at 521.497 kb on - strand at 521.497 kb on - strand at 521.497 kb on - strand at 521.497 kb on - strand at 521.497 kb on - strand at 521.497 kb on - strand at 521.508 kb on + strand at 521.514 kb on + strand at 521.516 kb on - strand at 521.522 kb on - strand at 521.522 kb on - strand at 521.575 kb on + strand at 521.575 kb on + strand at 521.575 kb on + strand at 521.575 kb on + strand at 521.575 kb on + strand at 521.575 kb on + strand at 521.575 kb on + strand at 521.583 kb on - strand at 521.583 kb on - strand at 521.583 kb on - strand at 521.583 kb on - strand at 521.583 kb on - strand at 521.794 kb on + strand at 521.823 kb on + strand at 521.831 kb on - strand at 521.853 kb on + strand at 521.974 kb on - strand at 521.986 kb on + strand at 521.992 kb on + strand at 522.000 kb on - strand at 522.000 kb on - strand at 522.000 kb on - strand at 522.000 kb on - strand at 522.000 kb on - strand at 522.000 kb on - strand at 522.046 kb on - strand at 522.048 kb on - strand at 522.048 kb on - strand at 522.076 kb on + strand at 522.085 kb on - strand at 522.085 kb on - strand at 522.100 kb on - strand, within CSW01_02600
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 518,449 - CSW01_02590 0.38 +0.2 518,451 + CSW01_02590 0.38 -1.6 518,451 + CSW01_02590 0.38 -1.5 518,460 - CSW01_02590 0.39 +0.4 518,460 - CSW01_02590 0.39 -0.5 518,471 - CSW01_02590 0.40 -0.8 518,507 + CSW01_02590 0.43 -2.1 518,507 + CSW01_02590 0.43 +1.2 518,507 + CSW01_02590 0.43 +0.5 518,507 + CSW01_02590 0.43 +0.4 518,507 + CSW01_02590 0.43 -0.3 518,507 + CSW01_02590 0.43 -1.6 518,507 + CSW01_02590 0.43 -3.3 518,507 + CSW01_02590 0.43 -0.0 518,507 + CSW01_02590 0.43 +0.1 518,507 + CSW01_02590 0.43 +1.3 518,507 + CSW01_02590 0.43 -2.0 518,507 + CSW01_02590 0.43 +0.4 518,507 + CSW01_02590 0.43 +1.3 518,507 + CSW01_02590 0.43 -1.3 518,507 + CSW01_02590 0.43 -1.3 518,507 + CSW01_02590 0.43 +0.2 518,507 + CSW01_02590 0.43 +0.5 518,515 - CSW01_02590 0.44 -0.0 518,515 - CSW01_02590 0.44 +1.0 518,515 - CSW01_02590 0.44 +1.0 518,515 - CSW01_02590 0.44 +2.2 518,515 - CSW01_02590 0.44 -0.3 518,515 - CSW01_02590 0.44 -1.4 518,515 - CSW01_02590 0.44 +1.6 518,515 - CSW01_02590 0.44 +0.3 518,515 - CSW01_02590 0.44 +1.1 518,515 - CSW01_02590 0.44 +0.4 518,515 - CSW01_02590 0.44 +0.7 518,515 - CSW01_02590 0.44 +0.2 518,515 - CSW01_02590 0.44 +0.8 518,515 - CSW01_02590 0.44 +0.6 518,515 - CSW01_02590 0.44 +0.8 518,515 - CSW01_02590 0.44 -1.1 518,538 - CSW01_02590 0.46 -3.0 518,560 + CSW01_02590 0.48 +0.7 518,589 + CSW01_02590 0.51 -0.2 518,674 + CSW01_02590 0.59 -3.6 518,681 + CSW01_02590 0.60 -2.4 518,683 + CSW01_02590 0.60 +1.4 518,688 - CSW01_02590 0.60 -3.5 518,693 + CSW01_02590 0.61 -1.5 518,701 - CSW01_02590 0.61 +1.2 518,701 - CSW01_02590 0.61 -2.4 518,701 - CSW01_02590 0.61 -2.8 518,701 - CSW01_02590 0.61 +1.7 518,701 - CSW01_02590 0.61 -1.6 518,751 - CSW01_02590 0.66 -2.1 518,751 - CSW01_02590 0.66 +0.6 518,756 - CSW01_02590 0.66 +0.6 518,756 - CSW01_02590 0.66 +2.2 518,780 - CSW01_02590 0.69 -1.6 518,822 + CSW01_02590 0.73 -3.2 518,830 - CSW01_02590 0.73 +0.1 518,860 - CSW01_02590 0.76 +1.7 518,875 + CSW01_02590 0.78 +0.7 518,880 - CSW01_02590 0.78 -0.6 518,904 - CSW01_02590 0.80 +0.5 518,976 + CSW01_02590 0.87 +0.4 518,976 + CSW01_02590 0.87 -2.5 518,976 + CSW01_02590 0.87 -2.1 518,984 - CSW01_02590 0.88 -3.4 518,984 - CSW01_02590 0.88 +0.8 518,984 - CSW01_02590 0.88 -0.4 518,984 - CSW01_02590 0.88 -0.3 518,999 - CSW01_02590 0.89 +1.1 519,032 + -0.5 519,040 - -1.8 519,049 + +1.5 519,049 + -0.9 519,057 - -2.6 519,061 + +0.4 519,066 + +0.3 519,066 + -0.6 519,073 + +1.7 519,074 - -0.4 519,074 - +0.3 519,142 + +0.3 519,160 - +0.4 519,338 - +0.4 519,358 + +1.5 519,371 + +0.2 519,379 - +0.6 519,400 + +3.1 519,417 + +0.9 519,422 + +0.3 519,439 + -3.0 519,517 + -2.2 519,525 - -1.0 519,544 + -5.2 519,616 - CSW01_02595 0.14 -2.0 519,653 + CSW01_02595 0.16 -2.2 519,680 + CSW01_02595 0.17 +0.8 519,773 - CSW01_02595 0.23 +2.6 519,803 + CSW01_02595 0.24 -0.6 519,895 - CSW01_02595 0.30 +2.1 519,938 + CSW01_02595 0.32 -0.6 519,946 - CSW01_02595 0.32 -1.0 520,008 - CSW01_02595 0.36 -4.2 520,020 - CSW01_02595 0.37 +0.7 520,029 - CSW01_02595 0.37 -1.1 520,030 - CSW01_02595 0.37 -2.5 520,189 - CSW01_02595 0.46 +1.6 520,194 + CSW01_02595 0.47 -2.1 520,194 + CSW01_02595 0.47 +2.0 520,194 + CSW01_02595 0.47 +0.0 520,202 - CSW01_02595 0.47 +0.1 520,202 - CSW01_02595 0.47 +1.0 520,225 + CSW01_02595 0.48 +1.8 520,236 + CSW01_02595 0.49 -3.6 520,236 + CSW01_02595 0.49 -2.4 520,236 + CSW01_02595 0.49 +0.6 520,236 + CSW01_02595 0.49 -1.8 520,244 - CSW01_02595 0.49 -3.1 520,244 - CSW01_02595 0.49 +1.2 520,267 + CSW01_02595 0.51 +0.9 520,333 + CSW01_02595 0.54 +1.0 520,335 + CSW01_02595 0.55 +0.9 520,335 + CSW01_02595 0.55 +1.4 520,341 - CSW01_02595 0.55 -1.3 520,341 - CSW01_02595 0.55 +1.2 520,402 + CSW01_02595 0.58 +0.6 520,410 - CSW01_02595 0.59 -1.9 520,410 - CSW01_02595 0.59 +0.8 520,412 - CSW01_02595 0.59 +1.3 520,450 - CSW01_02595 0.61 -0.1 520,468 + CSW01_02595 0.62 -0.9 520,480 + CSW01_02595 0.63 +0.2 520,480 + CSW01_02595 0.63 -0.3 520,488 - CSW01_02595 0.63 +1.2 520,488 - CSW01_02595 0.63 +1.3 520,503 - CSW01_02595 0.64 +0.4 520,668 + CSW01_02595 0.73 -4.4 520,752 + CSW01_02595 0.78 -0.1 520,760 - CSW01_02595 0.79 -1.8 520,873 + CSW01_02595 0.85 +2.1 520,883 + CSW01_02595 0.86 +0.8 520,883 + CSW01_02595 0.86 -1.4 520,883 + CSW01_02595 0.86 +0.7 520,883 + CSW01_02595 0.86 +0.3 520,883 + CSW01_02595 0.86 +1.2 520,883 + CSW01_02595 0.86 -0.9 520,883 + CSW01_02595 0.86 -0.3 520,883 + CSW01_02595 0.86 -0.5 520,891 - CSW01_02595 0.86 -3.2 520,891 - CSW01_02595 0.86 -0.6 520,891 - CSW01_02595 0.86 +1.8 520,891 - CSW01_02595 0.86 +0.6 520,891 - CSW01_02595 0.86 -1.0 520,924 - CSW01_02595 0.88 +0.2 520,932 + CSW01_02595 0.88 -0.2 520,932 + CSW01_02595 0.88 +1.6 520,932 + CSW01_02595 0.88 -2.7 520,940 - CSW01_02595 0.89 -0.3 520,946 + CSW01_02595 0.89 -1.3 521,005 - +0.6 521,048 + +0.9 521,056 - +1.3 521,140 + +0.1 521,148 - +1.0 521,173 - -3.4 521,196 + -3.0 521,196 + -2.0 521,204 - -2.0 521,229 - -2.2 521,248 - -0.8 521,368 - +0.6 521,398 + +0.9 521,398 + +1.4 521,406 + +0.9 521,406 - -0.7 521,414 - +1.4 521,430 + -2.1 521,438 - -0.5 521,464 + +0.2 521,476 + -3.0 521,489 + +0.1 521,489 + -0.8 521,489 + +0.0 521,489 + -0.3 521,489 + -0.0 521,497 - -0.1 521,497 - +0.2 521,497 - +1.1 521,497 - +0.1 521,497 - +0.1 521,497 - +2.3 521,508 + +0.4 521,514 + +1.1 521,516 - +0.0 521,522 - -0.2 521,522 - +0.8 521,575 + -3.3 521,575 + -2.0 521,575 + +0.3 521,575 + -2.4 521,575 + -1.4 521,575 + -2.9 521,575 + +1.7 521,583 - -0.1 521,583 - -3.9 521,583 - -0.4 521,583 - +2.4 521,583 - -2.0 521,794 + +0.7 521,823 + +0.1 521,831 - +0.4 521,853 + +1.7 521,974 - +0.9 521,986 + -1.0 521,992 + +1.1 522,000 - -1.5 522,000 - +0.4 522,000 - -0.5 522,000 - +0.5 522,000 - +0.6 522,000 - +1.5 522,046 - -3.6 522,048 - +1.0 522,048 - +1.6 522,076 + -0.8 522,085 - -0.4 522,085 - -0.4 522,100 - CSW01_02600 0.10 -3.3
Or see this region's nucleotide sequence