Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02540 and CSW01_02545 are separated by 187 nucleotides CSW01_02545 and CSW01_02550 are separated by 12 nucleotides CSW01_02550 and CSW01_02555 are separated by 63 nucleotides CSW01_02555 and CSW01_02560 are separated by 164 nucleotides
CSW01_02540: CSW01_02540 - class II fructose-bisphosphate aldolase, at 508,145 to 509,221
_02540
CSW01_02545: CSW01_02545 - hypothetical protein, at 509,409 to 509,504
_02545
CSW01_02550: CSW01_02550 - mechanosensitive ion channel protein, at 509,517 to 510,380
_02550
CSW01_02555: CSW01_02555 - amino acid transporter, at 510,444 to 511,079
_02555
CSW01_02560: CSW01_02560 - chromosome initiation inhibitor, at 511,244 to 512,140
_02560
Position (kb) 509
510
511 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 509.261 kb on - strand at 509.292 kb on - strand at 509.400 kb on + strand at 509.409 kb on - strand at 509.568 kb on - strand at 509.578 kb on - strand at 509.612 kb on + strand, within CSW01_02550 at 509.645 kb on - strand, within CSW01_02550 at 509.674 kb on - strand, within CSW01_02550 at 509.725 kb on - strand, within CSW01_02550 at 509.727 kb on + strand, within CSW01_02550 at 509.734 kb on + strand, within CSW01_02550 at 509.735 kb on - strand, within CSW01_02550 at 509.735 kb on - strand, within CSW01_02550 at 509.746 kb on + strand, within CSW01_02550 at 509.746 kb on + strand, within CSW01_02550 at 509.754 kb on - strand, within CSW01_02550 at 509.773 kb on - strand, within CSW01_02550 at 509.805 kb on - strand, within CSW01_02550 at 509.870 kb on - strand, within CSW01_02550 at 509.994 kb on + strand, within CSW01_02550 at 509.994 kb on + strand, within CSW01_02550 at 510.118 kb on + strand, within CSW01_02550 at 510.254 kb on + strand, within CSW01_02550 at 510.262 kb on - strand, within CSW01_02550 at 510.262 kb on - strand, within CSW01_02550 at 510.262 kb on - strand, within CSW01_02550 at 510.269 kb on + strand, within CSW01_02550 at 510.271 kb on + strand, within CSW01_02550 at 510.276 kb on + strand, within CSW01_02550 at 510.279 kb on + strand, within CSW01_02550 at 510.393 kb on + strand at 510.544 kb on + strand, within CSW01_02555 at 510.552 kb on - strand, within CSW01_02555 at 510.706 kb on + strand, within CSW01_02555 at 510.865 kb on + strand, within CSW01_02555 at 510.904 kb on - strand, within CSW01_02555 at 510.941 kb on + strand, within CSW01_02555 at 511.048 kb on - strand at 511.106 kb on + strand at 511.114 kb on - strand at 511.274 kb on + strand at 511.282 kb on - strand at 511.364 kb on - strand, within CSW01_02560
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 509,261 - -2.2 509,292 - +1.0 509,400 + -0.2 509,409 - +0.1 509,568 - -1.5 509,578 - -2.2 509,612 + CSW01_02550 0.11 -0.8 509,645 - CSW01_02550 0.15 -2.9 509,674 - CSW01_02550 0.18 -1.7 509,725 - CSW01_02550 0.24 -0.4 509,727 + CSW01_02550 0.24 -2.5 509,734 + CSW01_02550 0.25 +1.9 509,735 - CSW01_02550 0.25 +1.8 509,735 - CSW01_02550 0.25 +0.6 509,746 + CSW01_02550 0.27 -3.2 509,746 + CSW01_02550 0.27 -1.1 509,754 - CSW01_02550 0.27 +0.3 509,773 - CSW01_02550 0.30 -1.8 509,805 - CSW01_02550 0.33 -3.2 509,870 - CSW01_02550 0.41 -1.7 509,994 + CSW01_02550 0.55 -0.5 509,994 + CSW01_02550 0.55 +1.4 510,118 + CSW01_02550 0.70 -0.6 510,254 + CSW01_02550 0.85 -2.1 510,262 - CSW01_02550 0.86 -0.2 510,262 - CSW01_02550 0.86 -2.3 510,262 - CSW01_02550 0.86 -2.8 510,269 + CSW01_02550 0.87 +0.9 510,271 + CSW01_02550 0.87 -2.5 510,276 + CSW01_02550 0.88 +0.8 510,279 + CSW01_02550 0.88 -1.7 510,393 + +1.8 510,544 + CSW01_02555 0.16 +0.6 510,552 - CSW01_02555 0.17 -0.0 510,706 + CSW01_02555 0.41 -0.6 510,865 + CSW01_02555 0.66 -0.0 510,904 - CSW01_02555 0.72 -0.1 510,941 + CSW01_02555 0.78 +0.5 511,048 - +0.6 511,106 + -3.2 511,114 - -0.5 511,274 + -0.3 511,282 - -2.8 511,364 - CSW01_02560 0.13 -4.0
Or see this region's nucleotide sequence