Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_02345 and CSW01_02350 are separated by 154 nucleotides CSW01_02350 and CSW01_02355 are separated by 14 nucleotides CSW01_02355 and CSW01_02360 are separated by 28 nucleotides CSW01_02360 and CSW01_02365 are separated by 15 nucleotides CSW01_02365 and CSW01_02370 are separated by 41 nucleotides CSW01_02370 and CSW01_02375 are separated by 414 nucleotides
CSW01_02345: CSW01_02345 - molecular chaperone DjlA, at 476,133 to 476,987
_02345
CSW01_02350: CSW01_02350 - tRNA-Asn, at 477,142 to 477,217
_02350
CSW01_02355: CSW01_02355 - tRNA-Thr, at 477,232 to 477,307
_02355
CSW01_02360: CSW01_02360 - tRNA-Asn, at 477,336 to 477,411
_02360
CSW01_02365: CSW01_02365 - tRNA-Thr, at 477,427 to 477,502
_02365
CSW01_02370: CSW01_02370 - tRNA-Phe, at 477,544 to 477,619
_02370
CSW01_02375: CSW01_02375 - methyl-accepting chemotaxis protein, at 478,034 to 479,659
_02375
Position (kb) 477
478 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 476.599 kb on - strand, within CSW01_02345 at 476.617 kb on + strand, within CSW01_02345 at 476.640 kb on - strand, within CSW01_02345 at 476.692 kb on + strand, within CSW01_02345 at 476.732 kb on + strand, within CSW01_02345 at 476.759 kb on + strand, within CSW01_02345 at 476.767 kb on - strand, within CSW01_02345 at 476.796 kb on - strand, within CSW01_02345 at 476.805 kb on - strand, within CSW01_02345 at 476.829 kb on - strand, within CSW01_02345 at 476.839 kb on - strand, within CSW01_02345 at 476.840 kb on + strand, within CSW01_02345 at 476.904 kb on + strand at 476.906 kb on + strand at 476.950 kb on + strand at 476.950 kb on + strand at 477.751 kb on + strand at 477.779 kb on - strand at 477.885 kb on + strand at 477.909 kb on - strand at 477.945 kb on - strand at 478.005 kb on + strand at 478.005 kb on + strand at 478.059 kb on + strand at 478.066 kb on + strand at 478.066 kb on + strand at 478.066 kb on + strand at 478.066 kb on + strand at 478.074 kb on - strand at 478.074 kb on - strand at 478.074 kb on - strand at 478.074 kb on - strand at 478.074 kb on - strand at 478.074 kb on - strand at 478.104 kb on + strand at 478.112 kb on - strand at 478.123 kb on - strand at 478.130 kb on + strand at 478.135 kb on + strand at 478.135 kb on + strand at 478.138 kb on - strand at 478.138 kb on - strand at 478.249 kb on - strand, within CSW01_02375 at 478.312 kb on - strand, within CSW01_02375 at 478.312 kb on - strand, within CSW01_02375 at 478.333 kb on - strand, within CSW01_02375 at 478.395 kb on + strand, within CSW01_02375 at 478.398 kb on - strand, within CSW01_02375 at 478.403 kb on - strand, within CSW01_02375 at 478.451 kb on + strand, within CSW01_02375 at 478.619 kb on + strand, within CSW01_02375 at 478.619 kb on + strand, within CSW01_02375 at 478.619 kb on + strand, within CSW01_02375
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 476,599 - CSW01_02345 0.55 -0.9 476,617 + CSW01_02345 0.57 +1.3 476,640 - CSW01_02345 0.59 -2.5 476,692 + CSW01_02345 0.65 +0.2 476,732 + CSW01_02345 0.70 +0.1 476,759 + CSW01_02345 0.73 +0.8 476,767 - CSW01_02345 0.74 -2.5 476,796 - CSW01_02345 0.78 +2.0 476,805 - CSW01_02345 0.79 +1.4 476,829 - CSW01_02345 0.81 +1.1 476,839 - CSW01_02345 0.83 -0.3 476,840 + CSW01_02345 0.83 +1.6 476,904 + -1.2 476,906 + -1.3 476,950 + -1.0 476,950 + -2.8 477,751 + +0.4 477,779 - -1.5 477,885 + -0.5 477,909 - -5.2 477,945 - +1.4 478,005 + +0.7 478,005 + -4.1 478,059 + +1.9 478,066 + +0.6 478,066 + -3.8 478,066 + +0.0 478,066 + -0.6 478,074 - -2.8 478,074 - -3.6 478,074 - -0.1 478,074 - +1.4 478,074 - -0.4 478,074 - -0.0 478,104 + -0.3 478,112 - +0.1 478,123 - -0.1 478,130 + -2.5 478,135 + +1.1 478,135 + -1.0 478,138 - -0.6 478,138 - +0.1 478,249 - CSW01_02375 0.13 -1.2 478,312 - CSW01_02375 0.17 -2.0 478,312 - CSW01_02375 0.17 -2.3 478,333 - CSW01_02375 0.18 -0.5 478,395 + CSW01_02375 0.22 -2.8 478,398 - CSW01_02375 0.22 -2.6 478,403 - CSW01_02375 0.23 +1.0 478,451 + CSW01_02375 0.26 -1.8 478,619 + CSW01_02375 0.36 +0.3 478,619 + CSW01_02375 0.36 +0.3 478,619 + CSW01_02375 0.36 -1.0
Or see this region's nucleotide sequence