Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02085

Experiment: ICP1_phage_2.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_02080 and CSW01_02085 are separated by 155 nucleotidesCSW01_02085 and CSW01_02090 are separated by 169 nucleotides CSW01_02080: CSW01_02080 - UvrABC system protein A, at 416,396 to 419,218 _02080 CSW01_02085: CSW01_02085 - UTP--glucose-1-phosphate uridylyltransferase, at 419,374 to 420,249 _02085 CSW01_02090: CSW01_02090 - helix-turn-helix transcriptional regulator, at 420,419 to 421,063 _02090 Position (kb) 419 420 421Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5at 418.426 kb on - strand, within CSW01_02080at 418.426 kb on - strand, within CSW01_02080at 418.559 kb on + strand, within CSW01_02080at 418.559 kb on + strand, within CSW01_02080at 418.564 kb on + strand, within CSW01_02080at 418.579 kb on + strand, within CSW01_02080at 418.579 kb on - strand, within CSW01_02080at 418.592 kb on - strand, within CSW01_02080at 418.594 kb on + strand, within CSW01_02080at 418.594 kb on + strand, within CSW01_02080at 418.594 kb on + strand, within CSW01_02080at 418.725 kb on + strand, within CSW01_02080at 418.733 kb on - strand, within CSW01_02080at 418.733 kb on - strand, within CSW01_02080at 418.748 kb on - strand, within CSW01_02080at 418.771 kb on + strand, within CSW01_02080at 418.819 kb on + strand, within CSW01_02080at 418.827 kb on - strand, within CSW01_02080at 418.858 kb on - strand, within CSW01_02080at 418.886 kb on + strand, within CSW01_02080at 418.894 kb on - strand, within CSW01_02080at 418.901 kb on + strand, within CSW01_02080at 418.909 kb on + strand, within CSW01_02080at 419.035 kb on - strandat 419.042 kb on + strandat 419.050 kb on - strandat 419.087 kb on - strandat 419.087 kb on - strandat 419.105 kb on + strandat 419.115 kb on + strandat 419.115 kb on + strandat 419.128 kb on - strandat 419.133 kb on - strandat 419.216 kb on + strandat 419.221 kb on + strandat 419.229 kb on - strandat 419.251 kb on - strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.252 kb on + strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.260 kb on - strandat 419.367 kb on - strandat 419.472 kb on - strand, within CSW01_02085at 419.478 kb on - strand, within CSW01_02085at 419.502 kb on - strand, within CSW01_02085at 419.528 kb on - strand, within CSW01_02085at 419.540 kb on + strand, within CSW01_02085at 419.653 kb on + strand, within CSW01_02085at 419.653 kb on + strand, within CSW01_02085at 419.671 kb on - strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.767 kb on + strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.775 kb on - strand, within CSW01_02085at 419.806 kb on - strand, within CSW01_02085at 419.808 kb on + strand, within CSW01_02085at 419.808 kb on + strand, within CSW01_02085at 419.868 kb on - strand, within CSW01_02085at 419.905 kb on + strand, within CSW01_02085at 419.927 kb on - strand, within CSW01_02085at 419.928 kb on - strand, within CSW01_02085at 420.032 kb on + strand, within CSW01_02085at 420.109 kb on + strand, within CSW01_02085at 420.128 kb on + strand, within CSW01_02085at 420.169 kb on - strandat 420.259 kb on + strandat 420.289 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.313 kb on + strandat 420.321 kb on - strandat 420.401 kb on + strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.409 kb on - strandat 420.414 kb on - strandat 420.416 kb on - strandat 420.438 kb on + strandat 420.438 kb on + strandat 420.619 kb on + strand, within CSW01_02090at 420.642 kb on + strand, within CSW01_02090at 420.644 kb on - strand, within CSW01_02090at 420.694 kb on - strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.706 kb on + strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.714 kb on - strand, within CSW01_02090at 420.734 kb on + strand, within CSW01_02090at 420.743 kb on + strand, within CSW01_02090at 420.744 kb on + strand, within CSW01_02090at 420.752 kb on - strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.756 kb on + strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.764 kb on - strand, within CSW01_02090at 420.766 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.844 kb on + strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.852 kb on - strand, within CSW01_02090at 420.853 kb on - strand, within CSW01_02090at 420.932 kb on + strand, within CSW01_02090at 420.945 kb on + strand, within CSW01_02090at 420.976 kb on + strand, within CSW01_02090at 421.016 kb on - strandat 421.144 kb on + strandat 421.157 kb on + strandat 421.165 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
remove
418,426 - CSW01_02080 0.72 +0.7
418,426 - CSW01_02080 0.72 -0.7
418,559 + CSW01_02080 0.77 +0.4
418,559 + CSW01_02080 0.77 -1.1
418,564 + CSW01_02080 0.77 -2.3
418,579 + CSW01_02080 0.77 -1.4
418,579 - CSW01_02080 0.77 +2.0
418,592 - CSW01_02080 0.78 -3.3
418,594 + CSW01_02080 0.78 -4.1
418,594 + CSW01_02080 0.78 -0.4
418,594 + CSW01_02080 0.78 -4.2
418,725 + CSW01_02080 0.83 +0.5
418,733 - CSW01_02080 0.83 +1.2
418,733 - CSW01_02080 0.83 -1.5
418,748 - CSW01_02080 0.83 -3.7
418,771 + CSW01_02080 0.84 +1.0
418,819 + CSW01_02080 0.86 -3.0
418,827 - CSW01_02080 0.86 +1.3
418,858 - CSW01_02080 0.87 +0.1
418,886 + CSW01_02080 0.88 -0.3
418,894 - CSW01_02080 0.88 +3.4
418,901 + CSW01_02080 0.89 +1.0
418,909 + CSW01_02080 0.89 -3.5
419,035 - -1.7
419,042 + -3.7
419,050 - -3.3
419,087 - +0.5
419,087 - +1.0
419,105 + -0.2
419,115 + -0.6
419,115 + -0.5
419,128 - +0.7
419,133 - +1.3
419,216 + +0.0
419,221 + -2.3
419,229 - -0.2
419,251 - +1.0
419,252 + +0.5
419,252 + +0.3
419,252 + -0.2
419,252 + -3.8
419,252 + -2.1
419,252 + +1.4
419,260 - +0.1
419,260 - -0.3
419,260 - -2.1
419,260 - +1.0
419,260 - +0.2
419,260 - -0.4
419,367 - -2.2
419,472 - CSW01_02085 0.11 +4.6
419,478 - CSW01_02085 0.12 +4.3
419,502 - CSW01_02085 0.15 +4.3
419,528 - CSW01_02085 0.18 +4.4
419,540 + CSW01_02085 0.19 +4.3
419,653 + CSW01_02085 0.32 +4.4
419,653 + CSW01_02085 0.32 +5.3
419,671 - CSW01_02085 0.34 +4.4
419,767 + CSW01_02085 0.45 +4.2
419,767 + CSW01_02085 0.45 +3.5
419,767 + CSW01_02085 0.45 +4.2
419,767 + CSW01_02085 0.45 +4.4
419,767 + CSW01_02085 0.45 +4.0
419,767 + CSW01_02085 0.45 +4.0
419,767 + CSW01_02085 0.45 +3.2
419,767 + CSW01_02085 0.45 +4.1
419,775 - CSW01_02085 0.46 +3.9
419,775 - CSW01_02085 0.46 +4.5
419,775 - CSW01_02085 0.46 +5.0
419,775 - CSW01_02085 0.46 +4.1
419,775 - CSW01_02085 0.46 +3.2
419,775 - CSW01_02085 0.46 +4.3
419,806 - CSW01_02085 0.49 +4.5
419,808 + CSW01_02085 0.50 +4.4
419,808 + CSW01_02085 0.50 +4.6
419,868 - CSW01_02085 0.56 +5.1
419,905 + CSW01_02085 0.61 +4.9
419,927 - CSW01_02085 0.63 +4.1
419,928 - CSW01_02085 0.63 +3.9
420,032 + CSW01_02085 0.75 +3.8
420,109 + CSW01_02085 0.84 +5.2
420,128 + CSW01_02085 0.86 +3.7
420,169 - +4.5
420,259 + +3.7
420,289 + +0.5
420,313 + -0.7
420,313 + -4.4
420,313 + +1.6
420,313 + -2.2
420,313 + +0.3
420,321 - +0.9
420,401 + -0.0
420,409 - -0.1
420,409 - -0.3
420,409 - -2.4
420,414 - +1.3
420,416 - +0.3
420,438 + -1.6
420,438 + -1.0
420,619 + CSW01_02090 0.31 -1.3
420,642 + CSW01_02090 0.35 +1.1
420,644 - CSW01_02090 0.35 +1.1
420,694 - CSW01_02090 0.43 +0.0
420,706 + CSW01_02090 0.44 -0.5
420,706 + CSW01_02090 0.44 -0.6
420,706 + CSW01_02090 0.44 -0.3
420,706 + CSW01_02090 0.44 +0.1
420,706 + CSW01_02090 0.44 +0.4
420,706 + CSW01_02090 0.44 -1.8
420,706 + CSW01_02090 0.44 -2.7
420,706 + CSW01_02090 0.44 +2.0
420,714 - CSW01_02090 0.46 +2.0
420,714 - CSW01_02090 0.46 -1.0
420,714 - CSW01_02090 0.46 -4.1
420,714 - CSW01_02090 0.46 +0.2
420,714 - CSW01_02090 0.46 +1.6
420,714 - CSW01_02090 0.46 -2.8
420,714 - CSW01_02090 0.46 +1.1
420,714 - CSW01_02090 0.46 +0.6
420,734 + CSW01_02090 0.49 -2.3
420,743 + CSW01_02090 0.50 -3.2
420,744 + CSW01_02090 0.50 -2.8
420,752 - CSW01_02090 0.52 +1.5
420,756 + CSW01_02090 0.52 -0.4
420,756 + CSW01_02090 0.52 +2.4
420,764 - CSW01_02090 0.53 -2.4
420,764 - CSW01_02090 0.53 -1.9
420,764 - CSW01_02090 0.53 -2.7
420,764 - CSW01_02090 0.53 +0.1
420,766 + CSW01_02090 0.54 +1.3
420,844 + CSW01_02090 0.66 -0.8
420,844 + CSW01_02090 0.66 +2.7
420,844 + CSW01_02090 0.66 -2.0
420,852 - CSW01_02090 0.67 +0.3
420,852 - CSW01_02090 0.67 +0.1
420,852 - CSW01_02090 0.67 +1.3
420,852 - CSW01_02090 0.67 -0.2
420,852 - CSW01_02090 0.67 +2.4
420,852 - CSW01_02090 0.67 -0.0
420,853 - CSW01_02090 0.67 -1.9
420,932 + CSW01_02090 0.80 -1.1
420,945 + CSW01_02090 0.82 -0.3
420,976 + CSW01_02090 0.86 -0.5
421,016 - +0.3
421,144 + +0.6
421,157 + +1.2
421,165 - +0.6

Or see this region's nucleotide sequence