Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_02050

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_02040 and CSW01_02045 are separated by 107 nucleotidesCSW01_02045 and CSW01_02050 are separated by 25 nucleotidesCSW01_02050 and CSW01_02055 are separated by 473 nucleotides CSW01_02040: CSW01_02040 - 23S ribosomal RNA, at 402,533 to 405,448 _02040 CSW01_02045: CSW01_02045 - 5S ribosomal RNA, at 405,556 to 405,671 _02045 CSW01_02050: CSW01_02050 - tRNA-Asp, at 405,697 to 405,773 _02050 CSW01_02055: CSW01_02055 - sodium:proton antiporter, at 406,247 to 407,581 _02055 Position (kb) 405 406Strain fitness (log2 ratio) -3 -2 -1 0 1at 405.974 kb on + strandat 406.013 kb on - strandat 406.147 kb on + strandat 406.277 kb on + strandat 406.389 kb on + strand, within CSW01_02055at 406.389 kb on + strand, within CSW01_02055at 406.458 kb on + strand, within CSW01_02055at 406.458 kb on + strand, within CSW01_02055at 406.458 kb on + strand, within CSW01_02055at 406.458 kb on + strand, within CSW01_02055at 406.458 kb on + strand, within CSW01_02055at 406.458 kb on + strand, within CSW01_02055at 406.466 kb on - strand, within CSW01_02055at 406.493 kb on + strand, within CSW01_02055at 406.590 kb on - strand, within CSW01_02055at 406.644 kb on + strand, within CSW01_02055at 406.744 kb on + strand, within CSW01_02055at 406.744 kb on + strand, within CSW01_02055

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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405,974 + +1.1
406,013 - +0.2
406,147 + -3.4
406,277 + +1.7
406,389 + CSW01_02055 0.11 +0.2
406,389 + CSW01_02055 0.11 +0.3
406,458 + CSW01_02055 0.16 -0.3
406,458 + CSW01_02055 0.16 -0.6
406,458 + CSW01_02055 0.16 +1.2
406,458 + CSW01_02055 0.16 +0.7
406,458 + CSW01_02055 0.16 -2.9
406,458 + CSW01_02055 0.16 -3.5
406,466 - CSW01_02055 0.16 -0.1
406,493 + CSW01_02055 0.18 +1.5
406,590 - CSW01_02055 0.26 +0.7
406,644 + CSW01_02055 0.30 -0.9
406,744 + CSW01_02055 0.37 -1.5
406,744 + CSW01_02055 0.37 -3.4

Or see this region's nucleotide sequence