Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01365

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01355 and CSW01_01360 are separated by 7 nucleotidesCSW01_01360 and CSW01_01365 are separated by 142 nucleotidesCSW01_01365 and CSW01_01370 are separated by 261 nucleotides CSW01_01355: CSW01_01355 - UDP-glucose 4-epimerase, at 266,132 to 267,103 _01355 CSW01_01360: CSW01_01360 - sugar transferase, at 267,111 to 267,665 _01360 CSW01_01365: CSW01_01365 - MBL fold hydrolase, at 267,808 to 269,175 _01365 CSW01_01370: CSW01_01370 - mechanosensitive ion channel family protein, at 269,437 to 270,675 _01370 Position (kb) 267 268 269 270Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 266.811 kb on - strand, within CSW01_01355at 266.866 kb on + strand, within CSW01_01355at 266.874 kb on - strand, within CSW01_01355at 266.883 kb on + strand, within CSW01_01355at 266.935 kb on - strand, within CSW01_01355at 266.937 kb on + strand, within CSW01_01355at 266.940 kb on - strand, within CSW01_01355at 266.959 kb on + strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.966 kb on - strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 266.977 kb on + strand, within CSW01_01355at 267.020 kb on + strandat 267.063 kb on - strandat 267.150 kb on + strandat 267.150 kb on + strandat 267.158 kb on - strandat 267.161 kb on + strandat 267.169 kb on - strand, within CSW01_01360at 267.169 kb on - strand, within CSW01_01360at 267.171 kb on + strand, within CSW01_01360at 267.173 kb on + strand, within CSW01_01360at 267.179 kb on - strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.256 kb on + strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.264 kb on - strand, within CSW01_01360at 267.305 kb on - strand, within CSW01_01360at 267.384 kb on + strand, within CSW01_01360at 267.415 kb on + strand, within CSW01_01360at 267.421 kb on - strand, within CSW01_01360at 267.423 kb on - strand, within CSW01_01360at 267.537 kb on - strand, within CSW01_01360at 267.612 kb on - strandat 267.627 kb on + strandat 267.653 kb on + strandat 267.687 kb on - strandat 267.689 kb on + strandat 267.705 kb on - strandat 267.721 kb on + strandat 267.738 kb on + strandat 267.813 kb on + strandat 267.815 kb on + strandat 267.828 kb on + strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.836 kb on - strandat 267.878 kb on + strandat 267.880 kb on + strandat 267.886 kb on - strandat 267.906 kb on - strandat 267.970 kb on - strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.975 kb on + strand, within CSW01_01365at 267.989 kb on + strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.990 kb on - strand, within CSW01_01365at 267.999 kb on + strand, within CSW01_01365at 268.006 kb on - strand, within CSW01_01365at 268.019 kb on + strand, within CSW01_01365at 268.020 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.025 kb on - strand, within CSW01_01365at 268.033 kb on + strand, within CSW01_01365at 268.044 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.076 kb on + strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.084 kb on - strand, within CSW01_01365at 268.110 kb on + strand, within CSW01_01365at 268.150 kb on - strand, within CSW01_01365at 268.166 kb on + strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.174 kb on - strand, within CSW01_01365at 268.205 kb on - strand, within CSW01_01365at 268.243 kb on - strand, within CSW01_01365at 268.248 kb on + strand, within CSW01_01365at 268.256 kb on - strand, within CSW01_01365at 268.342 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.455 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.460 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.462 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.465 kb on + strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.468 kb on - strand, within CSW01_01365at 268.472 kb on + strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.478 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.480 kb on - strand, within CSW01_01365at 268.572 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.577 kb on + strand, within CSW01_01365at 268.590 kb on + strand, within CSW01_01365at 268.673 kb on + strand, within CSW01_01365at 268.705 kb on + strand, within CSW01_01365at 268.744 kb on - strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.746 kb on + strand, within CSW01_01365at 268.748 kb on + strand, within CSW01_01365at 268.748 kb on + strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.754 kb on - strand, within CSW01_01365at 268.756 kb on - strand, within CSW01_01365at 268.756 kb on - strand, within CSW01_01365at 268.793 kb on + strand, within CSW01_01365at 268.798 kb on + strand, within CSW01_01365at 268.842 kb on + strand, within CSW01_01365at 268.898 kb on - strand, within CSW01_01365at 268.925 kb on - strand, within CSW01_01365at 268.936 kb on + strand, within CSW01_01365at 268.944 kb on - strand, within CSW01_01365at 268.946 kb on + strand, within CSW01_01365at 268.956 kb on - strand, within CSW01_01365at 268.956 kb on - strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 268.973 kb on + strand, within CSW01_01365at 269.098 kb on + strandat 269.106 kb on - strandat 269.111 kb on + strandat 269.138 kb on + strandat 269.176 kb on + strandat 269.191 kb on - strandat 269.215 kb on - strandat 269.219 kb on + strandat 269.249 kb on - strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.297 kb on + strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.305 kb on - strandat 269.330 kb on + strandat 269.334 kb on - strandat 269.336 kb on - strandat 269.375 kb on + strandat 269.398 kb on - strandat 269.410 kb on - strandat 269.433 kb on + strandat 269.435 kb on + strandat 269.435 kb on + strandat 269.440 kb on + strandat 269.441 kb on - strandat 269.441 kb on - strandat 269.448 kb on - strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.490 kb on + strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.498 kb on - strandat 269.543 kb on + strandat 269.553 kb on - strandat 269.579 kb on + strand, within CSW01_01370at 269.581 kb on + strand, within CSW01_01370at 269.653 kb on + strand, within CSW01_01370at 269.781 kb on - strand, within CSW01_01370at 269.833 kb on + strand, within CSW01_01370at 269.841 kb on - strand, within CSW01_01370at 269.881 kb on + strand, within CSW01_01370at 269.915 kb on - strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 269.983 kb on + strand, within CSW01_01370at 270.001 kb on + strand, within CSW01_01370at 270.014 kb on - strand, within CSW01_01370at 270.058 kb on + strand, within CSW01_01370at 270.164 kb on - strand, within CSW01_01370at 270.172 kb on - strand, within CSW01_01370

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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266,811 - CSW01_01355 0.70 +1.3
266,866 + CSW01_01355 0.76 +0.2
266,874 - CSW01_01355 0.76 +0.0
266,883 + CSW01_01355 0.77 +0.4
266,935 - CSW01_01355 0.83 +1.2
266,937 + CSW01_01355 0.83 +0.7
266,940 - CSW01_01355 0.83 -4.6
266,959 + CSW01_01355 0.85 +1.4
266,966 - CSW01_01355 0.86 -2.2
266,966 - CSW01_01355 0.86 +0.1
266,966 - CSW01_01355 0.86 +1.0
266,977 + CSW01_01355 0.87 -1.2
266,977 + CSW01_01355 0.87 +2.0
267,020 + +1.9
267,063 - +4.5
267,150 + +4.9
267,150 + +4.6
267,158 - +5.8
267,161 + +4.7
267,169 - CSW01_01360 0.10 +4.6
267,169 - CSW01_01360 0.10 +4.9
267,171 + CSW01_01360 0.11 +5.2
267,173 + CSW01_01360 0.11 +5.1
267,179 - CSW01_01360 0.12 +4.3
267,256 + CSW01_01360 0.26 +4.7
267,256 + CSW01_01360 0.26 +5.5
267,256 + CSW01_01360 0.26 +5.1
267,264 - CSW01_01360 0.28 +3.7
267,264 - CSW01_01360 0.28 +4.8
267,305 - CSW01_01360 0.35 +5.3
267,384 + CSW01_01360 0.49 +3.6
267,415 + CSW01_01360 0.55 +5.0
267,421 - CSW01_01360 0.56 +4.3
267,423 - CSW01_01360 0.56 +5.9
267,537 - CSW01_01360 0.77 +4.9
267,612 - +5.5
267,627 + +4.9
267,653 + +5.0
267,687 - +1.4
267,689 + +1.4
267,705 - -3.6
267,721 + -0.8
267,738 + -2.3
267,813 + +0.5
267,815 + +1.2
267,828 + +1.3
267,836 - +0.6
267,836 - +0.6
267,836 - -0.6
267,878 + +1.3
267,880 + +0.6
267,886 - +1.8
267,906 - -2.2
267,970 - CSW01_01365 0.12 -3.1
267,975 + CSW01_01365 0.12 -0.4
267,975 + CSW01_01365 0.12 -0.5
267,989 + CSW01_01365 0.13 -0.2
267,990 - CSW01_01365 0.13 +1.1
267,990 - CSW01_01365 0.13 +0.9
267,999 + CSW01_01365 0.14 +0.1
268,006 - CSW01_01365 0.14 +0.9
268,019 + CSW01_01365 0.15 +0.6
268,020 - CSW01_01365 0.15 +0.3
268,025 - CSW01_01365 0.16 -4.8
268,025 - CSW01_01365 0.16 -2.3
268,025 - CSW01_01365 0.16 +0.4
268,025 - CSW01_01365 0.16 +1.7
268,033 + CSW01_01365 0.16 -4.0
268,044 + CSW01_01365 0.17 -2.9
268,076 + CSW01_01365 0.20 -0.9
268,076 + CSW01_01365 0.20 +0.5
268,076 + CSW01_01365 0.20 +1.4
268,084 - CSW01_01365 0.20 -0.2
268,084 - CSW01_01365 0.20 +0.1
268,110 + CSW01_01365 0.22 +0.6
268,150 - CSW01_01365 0.25 -2.7
268,166 + CSW01_01365 0.26 -1.8
268,174 - CSW01_01365 0.27 -0.6
268,174 - CSW01_01365 0.27 +0.4
268,174 - CSW01_01365 0.27 -1.2
268,174 - CSW01_01365 0.27 +0.2
268,174 - CSW01_01365 0.27 +1.0
268,174 - CSW01_01365 0.27 +1.7
268,205 - CSW01_01365 0.29 -3.1
268,243 - CSW01_01365 0.32 +1.2
268,248 + CSW01_01365 0.32 -0.5
268,256 - CSW01_01365 0.33 +0.4
268,342 + CSW01_01365 0.39 -2.6
268,455 + CSW01_01365 0.47 +1.8
268,455 + CSW01_01365 0.47 -1.4
268,460 + CSW01_01365 0.48 -2.2
268,460 + CSW01_01365 0.48 +0.4
268,462 + CSW01_01365 0.48 +0.1
268,462 + CSW01_01365 0.48 +0.8
268,462 + CSW01_01365 0.48 -2.6
268,465 + CSW01_01365 0.48 +0.8
268,465 + CSW01_01365 0.48 -0.7
268,465 + CSW01_01365 0.48 -1.9
268,468 - CSW01_01365 0.48 +0.7
268,468 - CSW01_01365 0.48 -2.5
268,472 + CSW01_01365 0.49 +1.5
268,478 - CSW01_01365 0.49 +0.2
268,478 - CSW01_01365 0.49 +1.5
268,480 - CSW01_01365 0.49 +0.4
268,480 - CSW01_01365 0.49 -0.4
268,480 - CSW01_01365 0.49 +0.1
268,480 - CSW01_01365 0.49 +0.2
268,572 + CSW01_01365 0.56 +0.6
268,577 + CSW01_01365 0.56 -0.3
268,577 + CSW01_01365 0.56 +0.4
268,590 + CSW01_01365 0.57 +0.7
268,673 + CSW01_01365 0.63 -4.1
268,705 + CSW01_01365 0.66 -0.8
268,744 - CSW01_01365 0.68 -0.4
268,746 + CSW01_01365 0.69 -2.7
268,746 + CSW01_01365 0.69 -3.4
268,746 + CSW01_01365 0.69 +1.5
268,746 + CSW01_01365 0.69 +0.5
268,748 + CSW01_01365 0.69 +1.8
268,748 + CSW01_01365 0.69 +0.5
268,754 - CSW01_01365 0.69 +1.7
268,754 - CSW01_01365 0.69 +0.9
268,754 - CSW01_01365 0.69 -0.2
268,754 - CSW01_01365 0.69 +1.5
268,754 - CSW01_01365 0.69 +0.0
268,754 - CSW01_01365 0.69 +1.2
268,756 - CSW01_01365 0.69 -0.4
268,756 - CSW01_01365 0.69 +0.2
268,793 + CSW01_01365 0.72 -3.0
268,798 + CSW01_01365 0.72 -3.0
268,842 + CSW01_01365 0.76 -0.7
268,898 - CSW01_01365 0.80 -0.1
268,925 - CSW01_01365 0.82 +3.0
268,936 + CSW01_01365 0.82 -2.3
268,944 - CSW01_01365 0.83 +1.0
268,946 + CSW01_01365 0.83 +0.4
268,956 - CSW01_01365 0.84 +0.2
268,956 - CSW01_01365 0.84 +1.2
268,973 + CSW01_01365 0.85 +0.8
268,973 + CSW01_01365 0.85 +0.7
268,973 + CSW01_01365 0.85 +0.3
268,973 + CSW01_01365 0.85 +1.3
269,098 + -2.3
269,106 - +0.4
269,111 + -2.6
269,138 + +0.1
269,176 + -2.0
269,191 - +0.6
269,215 - -2.3
269,219 + -1.6
269,249 - -2.7
269,297 + -1.9
269,297 + +0.6
269,297 + -3.2
269,297 + -0.5
269,297 + -1.3
269,297 + -0.4
269,297 + +1.6
269,297 + -1.2
269,305 - +1.3
269,305 - -3.4
269,305 - -4.2
269,305 - -4.4
269,305 - +1.2
269,305 - -0.2
269,305 - -0.6
269,305 - -3.6
269,330 + -1.8
269,334 - -0.0
269,336 - -3.3
269,375 + +0.4
269,398 - +0.1
269,410 - +0.8
269,433 + -3.2
269,435 + -4.2
269,435 + -4.7
269,440 + +0.0
269,441 - +0.4
269,441 - -1.8
269,448 - -2.6
269,490 + +0.4
269,490 + +1.1
269,490 + -2.5
269,490 + -0.8
269,498 - +1.1
269,498 - -1.6
269,498 - +0.3
269,498 - -1.2
269,498 - +0.4
269,498 - -3.6
269,543 + +0.8
269,553 - +1.0
269,579 + CSW01_01370 0.11 -0.3
269,581 + CSW01_01370 0.12 +0.6
269,653 + CSW01_01370 0.17 +0.6
269,781 - CSW01_01370 0.28 -0.8
269,833 + CSW01_01370 0.32 +0.1
269,841 - CSW01_01370 0.33 +0.3
269,881 + CSW01_01370 0.36 -4.2
269,915 - CSW01_01370 0.39 +0.0
269,983 + CSW01_01370 0.44 -1.2
269,983 + CSW01_01370 0.44 +1.8
270,001 + CSW01_01370 0.46 -3.8
270,014 - CSW01_01370 0.47 +0.3
270,058 + CSW01_01370 0.50 +0.3
270,164 - CSW01_01370 0.59 -0.8
270,172 - CSW01_01370 0.59 -3.4

Or see this region's nucleotide sequence