Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01300

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01290 and CSW01_01295 overlap by 29 nucleotidesCSW01_01295 and CSW01_01300 overlap by 62 nucleotidesCSW01_01300 and CSW01_01305 are separated by 38 nucleotidesCSW01_01305 and CSW01_01310 are separated by 5 nucleotides CSW01_01290: CSW01_01290 - rfbG protein, at 251,556 to 252,947 _01290 CSW01_01295: CSW01_01295 - ABC transporter permease, at 252,919 to 253,713 _01295 CSW01_01300: CSW01_01300 - sugar ABC transporter, at 253,652 to 254,467 _01300 CSW01_01305: CSW01_01305 - acyl carrier protein, at 254,506 to 254,748 _01305 CSW01_01310: CSW01_01310 - long-chain fatty acid--CoA ligase, at 254,754 to 256,169 _01310 Position (kb) 253 254 255Strain fitness (log2 ratio) -1 0 1 2 3 4 5 6at 252.656 kb on + strand, within CSW01_01290at 252.665 kb on - strand, within CSW01_01290at 252.692 kb on + strand, within CSW01_01290at 252.692 kb on + strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.700 kb on - strand, within CSW01_01290at 252.719 kb on + strand, within CSW01_01290at 252.727 kb on - strand, within CSW01_01290at 252.753 kb on + strand, within CSW01_01290at 252.757 kb on - strand, within CSW01_01290at 252.761 kb on - strand, within CSW01_01290at 252.761 kb on - strand, within CSW01_01290at 253.087 kb on - strand, within CSW01_01295at 253.212 kb on + strand, within CSW01_01295at 253.240 kb on + strand, within CSW01_01295at 253.249 kb on - strand, within CSW01_01295at 253.329 kb on - strand, within CSW01_01295at 253.453 kb on - strand, within CSW01_01295at 253.523 kb on - strand, within CSW01_01295at 253.746 kb on + strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.754 kb on - strand, within CSW01_01300at 253.947 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 253.979 kb on - strand, within CSW01_01300at 254.056 kb on - strand, within CSW01_01300at 254.056 kb on - strand, within CSW01_01300at 254.075 kb on + strand, within CSW01_01300at 254.177 kb on - strand, within CSW01_01300at 254.196 kb on - strand, within CSW01_01300at 254.196 kb on - strand, within CSW01_01300at 254.211 kb on + strand, within CSW01_01300at 254.327 kb on - strand, within CSW01_01300at 254.366 kb on - strand, within CSW01_01300at 254.388 kb on - strandat 254.590 kb on + strand, within CSW01_01305at 254.602 kb on + strand, within CSW01_01305at 254.602 kb on + strand, within CSW01_01305at 254.602 kb on + strand, within CSW01_01305at 254.622 kb on - strand, within CSW01_01305at 254.624 kb on + strand, within CSW01_01305at 254.624 kb on + strand, within CSW01_01305at 254.627 kb on - strand, within CSW01_01305at 254.634 kb on + strand, within CSW01_01305at 254.639 kb on + strand, within CSW01_01305at 254.682 kb on - strand, within CSW01_01305at 254.789 kb on + strandat 254.798 kb on + strandat 254.798 kb on + strandat 254.803 kb on + strandat 254.803 kb on + strandat 254.803 kb on + strandat 254.803 kb on + strandat 254.803 kb on + strandat 254.806 kb on - strandat 254.811 kb on - strandat 254.811 kb on - strandat 254.811 kb on - strandat 254.811 kb on - strandat 254.811 kb on - strandat 254.879 kb on + strandat 254.879 kb on + strandat 254.885 kb on + strandat 254.885 kb on + strandat 254.886 kb on + strandat 254.887 kb on + strandat 254.887 kb on + strandat 254.887 kb on + strandat 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.899 kb on + strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.907 kb on - strand, within CSW01_01310at 254.908 kb on + strand, within CSW01_01310at 254.916 kb on - strand, within CSW01_01310at 254.916 kb on - strand, within CSW01_01310at 255.011 kb on - strand, within CSW01_01310at 255.017 kb on - strand, within CSW01_01310at 255.017 kb on - strand, within CSW01_01310at 255.017 kb on - strand, within CSW01_01310at 255.017 kb on - strand, within CSW01_01310at 255.023 kb on - strand, within CSW01_01310at 255.128 kb on + strand, within CSW01_01310at 255.152 kb on + strand, within CSW01_01310at 255.160 kb on + strand, within CSW01_01310at 255.163 kb on + strand, within CSW01_01310at 255.166 kb on + strand, within CSW01_01310at 255.169 kb on + strand, within CSW01_01310at 255.169 kb on - strand, within CSW01_01310at 255.176 kb on + strand, within CSW01_01310at 255.176 kb on + strand, within CSW01_01310at 255.184 kb on - strand, within CSW01_01310at 255.184 kb on - strand, within CSW01_01310at 255.184 kb on - strand, within CSW01_01310at 255.184 kb on - strand, within CSW01_01310at 255.184 kb on - strand, within CSW01_01310at 255.192 kb on - strand, within CSW01_01310at 255.192 kb on - strand, within CSW01_01310at 255.204 kb on + strand, within CSW01_01310at 255.213 kb on - strand, within CSW01_01310at 255.213 kb on - strand, within CSW01_01310at 255.219 kb on + strand, within CSW01_01310at 255.227 kb on + strand, within CSW01_01310at 255.227 kb on + strand, within CSW01_01310at 255.227 kb on + strand, within CSW01_01310at 255.235 kb on - strand, within CSW01_01310at 255.235 kb on - strand, within CSW01_01310at 255.235 kb on - strand, within CSW01_01310at 255.235 kb on - strand, within CSW01_01310at 255.235 kb on - strand, within CSW01_01310at 255.235 kb on - strand, within CSW01_01310at 255.279 kb on + strand, within CSW01_01310at 255.292 kb on + strand, within CSW01_01310at 255.300 kb on - strand, within CSW01_01310at 255.347 kb on + strand, within CSW01_01310at 255.363 kb on - strand, within CSW01_01310at 255.384 kb on + strand, within CSW01_01310at 255.384 kb on + strand, within CSW01_01310at 255.385 kb on + strand, within CSW01_01310at 255.385 kb on - strand, within CSW01_01310at 255.385 kb on - strand, within CSW01_01310at 255.392 kb on - strand, within CSW01_01310at 255.392 kb on - strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.408 kb on + strand, within CSW01_01310at 255.414 kb on + strand, within CSW01_01310at 255.416 kb on - strand, within CSW01_01310at 255.416 kb on - strand, within CSW01_01310at 255.422 kb on - strand, within CSW01_01310at 255.423 kb on + strand, within CSW01_01310at 255.423 kb on + strand, within CSW01_01310at 255.423 kb on + strand, within CSW01_01310at 255.461 kb on + strand, within CSW01_01310at 255.462 kb on - strand, within CSW01_01310

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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252,656 + CSW01_01290 0.79 +4.8
252,665 - CSW01_01290 0.80 +4.3
252,692 + CSW01_01290 0.82 +5.2
252,692 + CSW01_01290 0.82 +5.1
252,700 - CSW01_01290 0.82 +5.7
252,700 - CSW01_01290 0.82 +5.0
252,700 - CSW01_01290 0.82 +5.3
252,719 + CSW01_01290 0.84 +5.3
252,727 - CSW01_01290 0.84 +5.3
252,753 + CSW01_01290 0.86 +5.2
252,757 - CSW01_01290 0.86 +5.2
252,761 - CSW01_01290 0.87 +4.6
252,761 - CSW01_01290 0.87 +4.9
253,087 - CSW01_01295 0.21 +5.2
253,212 + CSW01_01295 0.37 +3.8
253,240 + CSW01_01295 0.40 +0.6
253,249 - CSW01_01295 0.42 +4.9
253,329 - CSW01_01295 0.52 +4.1
253,453 - CSW01_01295 0.67 +4.0
253,523 - CSW01_01295 0.76 +4.3
253,746 + CSW01_01300 0.12 +4.8
253,754 - CSW01_01300 0.12 +3.9
253,754 - CSW01_01300 0.12 +4.5
253,754 - CSW01_01300 0.12 +5.3
253,754 - CSW01_01300 0.12 +5.0
253,754 - CSW01_01300 0.12 +4.3
253,947 - CSW01_01300 0.36 +4.5
253,979 - CSW01_01300 0.40 +6.5
253,979 - CSW01_01300 0.40 +5.1
253,979 - CSW01_01300 0.40 +4.5
253,979 - CSW01_01300 0.40 +3.6
254,056 - CSW01_01300 0.50 +4.4
254,056 - CSW01_01300 0.50 +2.2
254,075 + CSW01_01300 0.52 +5.4
254,177 - CSW01_01300 0.64 +5.1
254,196 - CSW01_01300 0.67 +4.6
254,196 - CSW01_01300 0.67 +4.3
254,211 + CSW01_01300 0.69 +5.3
254,327 - CSW01_01300 0.83 +5.1
254,366 - CSW01_01300 0.88 +5.3
254,388 - +5.0
254,590 + CSW01_01305 0.35 +5.2
254,602 + CSW01_01305 0.40 +5.1
254,602 + CSW01_01305 0.40 +4.2
254,602 + CSW01_01305 0.40 +4.8
254,622 - CSW01_01305 0.48 +4.9
254,624 + CSW01_01305 0.49 +4.9
254,624 + CSW01_01305 0.49 +4.8
254,627 - CSW01_01305 0.50 +5.0
254,634 + CSW01_01305 0.53 +5.3
254,639 + CSW01_01305 0.55 +5.5
254,682 - CSW01_01305 0.72 +4.6
254,789 + +5.0
254,798 + +5.3
254,798 + +5.3
254,803 + +4.7
254,803 + +4.7
254,803 + +5.0
254,803 + +5.5
254,803 + +5.5
254,806 - +5.3
254,811 - +5.6
254,811 - +5.3
254,811 - +4.8
254,811 - +4.7
254,811 - +4.7
254,879 + +5.1
254,879 + +4.9
254,885 + +5.5
254,885 + +5.3
254,886 + +5.4
254,887 + +5.6
254,887 + +5.3
254,887 + +4.9
254,899 + CSW01_01310 0.10 +4.8
254,899 + CSW01_01310 0.10 +5.5
254,899 + CSW01_01310 0.10 +4.8
254,899 + CSW01_01310 0.10 +4.8
254,899 + CSW01_01310 0.10 +5.0
254,899 + CSW01_01310 0.10 +5.4
254,899 + CSW01_01310 0.10 +4.6
254,899 + CSW01_01310 0.10 +4.5
254,899 + CSW01_01310 0.10 +5.3
254,899 + CSW01_01310 0.10 +5.2
254,899 + CSW01_01310 0.10 +4.2
254,899 + CSW01_01310 0.10 +5.4
254,899 + CSW01_01310 0.10 +5.7
254,899 + CSW01_01310 0.10 +4.4
254,899 + CSW01_01310 0.10 +5.2
254,899 + CSW01_01310 0.10 +5.0
254,899 + CSW01_01310 0.10 +5.4
254,899 + CSW01_01310 0.10 +5.4
254,899 + CSW01_01310 0.10 +4.7
254,907 - CSW01_01310 0.11 +4.8
254,907 - CSW01_01310 0.11 +4.9
254,907 - CSW01_01310 0.11 +4.6
254,907 - CSW01_01310 0.11 +4.1
254,907 - CSW01_01310 0.11 +5.6
254,907 - CSW01_01310 0.11 +5.3
254,907 - CSW01_01310 0.11 +4.2
254,907 - CSW01_01310 0.11 +4.9
254,907 - CSW01_01310 0.11 +4.6
254,907 - CSW01_01310 0.11 +5.2
254,907 - CSW01_01310 0.11 +5.0
254,907 - CSW01_01310 0.11 +3.4
254,907 - CSW01_01310 0.11 +4.7
254,907 - CSW01_01310 0.11 +5.2
254,907 - CSW01_01310 0.11 +4.7
254,908 + CSW01_01310 0.11 +5.0
254,916 - CSW01_01310 0.11 +4.5
254,916 - CSW01_01310 0.11 +4.7
255,011 - CSW01_01310 0.18 +4.7
255,017 - CSW01_01310 0.19 +5.0
255,017 - CSW01_01310 0.19 +4.3
255,017 - CSW01_01310 0.19 +5.3
255,017 - CSW01_01310 0.19 +4.7
255,023 - CSW01_01310 0.19 +5.1
255,128 + CSW01_01310 0.26 +5.4
255,152 + CSW01_01310 0.28 +4.8
255,160 + CSW01_01310 0.29 +5.3
255,163 + CSW01_01310 0.29 +4.9
255,166 + CSW01_01310 0.29 +4.9
255,169 + CSW01_01310 0.29 +4.9
255,169 - CSW01_01310 0.29 +5.0
255,176 + CSW01_01310 0.30 +5.2
255,176 + CSW01_01310 0.30 +5.4
255,184 - CSW01_01310 0.30 +4.4
255,184 - CSW01_01310 0.30 +5.3
255,184 - CSW01_01310 0.30 +4.9
255,184 - CSW01_01310 0.30 +4.0
255,184 - CSW01_01310 0.30 +5.2
255,192 - CSW01_01310 0.31 +5.3
255,192 - CSW01_01310 0.31 +4.7
255,204 + CSW01_01310 0.32 +4.9
255,213 - CSW01_01310 0.32 +5.0
255,213 - CSW01_01310 0.32 +5.4
255,219 + CSW01_01310 0.33 +5.3
255,227 + CSW01_01310 0.33 +5.2
255,227 + CSW01_01310 0.33 +5.3
255,227 + CSW01_01310 0.33 +5.0
255,235 - CSW01_01310 0.34 +4.7
255,235 - CSW01_01310 0.34 +4.8
255,235 - CSW01_01310 0.34 +5.5
255,235 - CSW01_01310 0.34 +4.3
255,235 - CSW01_01310 0.34 +4.9
255,235 - CSW01_01310 0.34 +5.0
255,279 + CSW01_01310 0.37 +4.9
255,292 + CSW01_01310 0.38 +5.1
255,300 - CSW01_01310 0.39 +4.7
255,347 + CSW01_01310 0.42 +4.8
255,363 - CSW01_01310 0.43 +4.8
255,384 + CSW01_01310 0.44 +4.5
255,384 + CSW01_01310 0.44 +4.8
255,385 + CSW01_01310 0.45 +4.8
255,385 - CSW01_01310 0.45 +4.8
255,385 - CSW01_01310 0.45 +5.3
255,392 - CSW01_01310 0.45 +4.9
255,392 - CSW01_01310 0.45 +6.1
255,408 + CSW01_01310 0.46 +4.9
255,408 + CSW01_01310 0.46 +5.1
255,408 + CSW01_01310 0.46 +5.3
255,408 + CSW01_01310 0.46 +4.6
255,408 + CSW01_01310 0.46 +4.9
255,408 + CSW01_01310 0.46 +4.6
255,408 + CSW01_01310 0.46 +5.0
255,408 + CSW01_01310 0.46 +4.3
255,408 + CSW01_01310 0.46 +4.8
255,408 + CSW01_01310 0.46 +5.3
255,414 + CSW01_01310 0.47 +5.1
255,416 - CSW01_01310 0.47 +5.4
255,416 - CSW01_01310 0.47 +5.0
255,422 - CSW01_01310 0.47 +5.2
255,423 + CSW01_01310 0.47 +4.9
255,423 + CSW01_01310 0.47 +4.8
255,423 + CSW01_01310 0.47 +5.5
255,461 + CSW01_01310 0.50 +5.2
255,462 - CSW01_01310 0.50 +5.1

Or see this region's nucleotide sequence