Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01245

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01240 and CSW01_01245 overlap by 4 nucleotidesCSW01_01245 and CSW01_01250 overlap by 4 nucleotides CSW01_01240: CSW01_01240 - lipopolysaccharide biosynthesis protein, at 239,355 to 240,404 _01240 CSW01_01245: CSW01_01245 - lipopolysaccharide heptosyltransferase II, at 240,401 to 241,441 _01245 CSW01_01250: CSW01_01250 - polymerase, at 241,438 to 242,637 _01250 Position (kb) 240 241 242Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4 5 6at 239.429 kb on + strandat 239.466 kb on + strand, within CSW01_01240at 239.473 kb on + strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.474 kb on - strand, within CSW01_01240at 239.621 kb on - strand, within CSW01_01240at 239.658 kb on + strand, within CSW01_01240at 239.693 kb on + strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.800 kb on - strand, within CSW01_01240at 239.961 kb on + strand, within CSW01_01240at 239.969 kb on - strand, within CSW01_01240at 239.979 kb on + strand, within CSW01_01240at 239.985 kb on - strand, within CSW01_01240at 239.987 kb on - strand, within CSW01_01240at 240.093 kb on + strand, within CSW01_01240at 240.101 kb on - strand, within CSW01_01240at 240.101 kb on - strand, within CSW01_01240at 240.126 kb on - strand, within CSW01_01240at 240.173 kb on + strand, within CSW01_01240at 240.173 kb on + strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.181 kb on - strand, within CSW01_01240at 240.192 kb on - strand, within CSW01_01240at 240.289 kb on + strand, within CSW01_01240at 240.396 kb on - strandat 240.458 kb on - strandat 240.556 kb on - strand, within CSW01_01245at 240.582 kb on - strand, within CSW01_01245at 240.582 kb on - strand, within CSW01_01245at 240.642 kb on + strand, within CSW01_01245at 240.655 kb on - strand, within CSW01_01245at 240.738 kb on + strand, within CSW01_01245at 240.738 kb on + strand, within CSW01_01245at 240.806 kb on + strand, within CSW01_01245at 240.832 kb on + strand, within CSW01_01245at 240.847 kb on + strand, within CSW01_01245at 240.847 kb on + strand, within CSW01_01245at 240.850 kb on - strand, within CSW01_01245at 240.850 kb on - strand, within CSW01_01245at 240.877 kb on - strand, within CSW01_01245at 240.904 kb on + strand, within CSW01_01245at 241.022 kb on - strand, within CSW01_01245at 241.159 kb on - strand, within CSW01_01245at 241.188 kb on - strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.213 kb on + strand, within CSW01_01245at 241.221 kb on - strand, within CSW01_01245at 241.221 kb on - strand, within CSW01_01245at 241.228 kb on - strand, within CSW01_01245at 241.375 kb on + strandat 241.383 kb on - strandat 241.383 kb on - strandat 241.383 kb on - strandat 241.383 kb on - strandat 241.462 kb on + strandat 241.535 kb on - strandat 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on + strand, within CSW01_01250at 241.715 kb on - strand, within CSW01_01250at 241.715 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.723 kb on - strand, within CSW01_01250at 241.725 kb on + strand, within CSW01_01250at 241.735 kb on - strand, within CSW01_01250at 241.735 kb on - strand, within CSW01_01250at 241.740 kb on - strand, within CSW01_01250at 241.818 kb on + strand, within CSW01_01250at 241.824 kb on - strand, within CSW01_01250at 241.846 kb on + strand, within CSW01_01250at 241.846 kb on + strand, within CSW01_01250at 241.846 kb on + strand, within CSW01_01250at 241.854 kb on - strand, within CSW01_01250at 241.854 kb on - strand, within CSW01_01250at 241.854 kb on - strand, within CSW01_01250at 241.872 kb on - strand, within CSW01_01250at 241.873 kb on - strand, within CSW01_01250at 241.879 kb on - strand, within CSW01_01250at 241.971 kb on - strand, within CSW01_01250at 242.059 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.089 kb on + strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.097 kb on - strand, within CSW01_01250at 242.114 kb on - strand, within CSW01_01250at 242.114 kb on - strand, within CSW01_01250at 242.114 kb on - strand, within CSW01_01250at 242.115 kb on - strand, within CSW01_01250at 242.116 kb on - strand, within CSW01_01250at 242.116 kb on - strand, within CSW01_01250at 242.121 kb on - strand, within CSW01_01250at 242.123 kb on - strand, within CSW01_01250at 242.182 kb on + strand, within CSW01_01250at 242.182 kb on + strand, within CSW01_01250at 242.182 kb on + strand, within CSW01_01250at 242.183 kb on + strand, within CSW01_01250at 242.183 kb on + strand, within CSW01_01250at 242.190 kb on - strand, within CSW01_01250at 242.190 kb on - strand, within CSW01_01250at 242.228 kb on + strand, within CSW01_01250at 242.228 kb on + strand, within CSW01_01250at 242.228 kb on + strand, within CSW01_01250at 242.236 kb on - strand, within CSW01_01250at 242.275 kb on + strand, within CSW01_01250at 242.296 kb on + strand, within CSW01_01250at 242.318 kb on - strand, within CSW01_01250at 242.319 kb on - strand, within CSW01_01250at 242.365 kb on + strand, within CSW01_01250at 242.365 kb on + strand, within CSW01_01250at 242.372 kb on + strand, within CSW01_01250at 242.372 kb on + strand, within CSW01_01250at 242.372 kb on + strand, within CSW01_01250at 242.373 kb on - strand, within CSW01_01250at 242.373 kb on - strand, within CSW01_01250at 242.375 kb on + strand, within CSW01_01250at 242.375 kb on + strand, within CSW01_01250at 242.375 kb on + strand, within CSW01_01250at 242.375 kb on + strand, within CSW01_01250at 242.377 kb on + strand, within CSW01_01250at 242.377 kb on + strand, within CSW01_01250at 242.377 kb on + strand, within CSW01_01250at 242.377 kb on + strand, within CSW01_01250at 242.377 kb on + strand, within CSW01_01250at 242.377 kb on + strand, within CSW01_01250at 242.383 kb on - strand, within CSW01_01250at 242.383 kb on - strand, within CSW01_01250at 242.385 kb on + strand, within CSW01_01250at 242.385 kb on - strand, within CSW01_01250at 242.385 kb on - strand, within CSW01_01250at 242.385 kb on - strand, within CSW01_01250

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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239,429 + -1.2
239,466 + CSW01_01240 0.11 -0.7
239,473 + CSW01_01240 0.11 +0.1
239,474 - CSW01_01240 0.11 -0.3
239,474 - CSW01_01240 0.11 -3.3
239,621 - CSW01_01240 0.25 -0.7
239,658 + CSW01_01240 0.29 -3.5
239,693 + CSW01_01240 0.32 -3.8
239,800 - CSW01_01240 0.42 +0.2
239,800 - CSW01_01240 0.42 -0.6
239,800 - CSW01_01240 0.42 -3.3
239,800 - CSW01_01240 0.42 +0.8
239,800 - CSW01_01240 0.42 -3.7
239,961 + CSW01_01240 0.58 -0.3
239,969 - CSW01_01240 0.58 -0.2
239,979 + CSW01_01240 0.59 -1.2
239,985 - CSW01_01240 0.60 +0.3
239,987 - CSW01_01240 0.60 +1.9
240,093 + CSW01_01240 0.70 -3.1
240,101 - CSW01_01240 0.71 -1.6
240,101 - CSW01_01240 0.71 +0.8
240,126 - CSW01_01240 0.73 +1.2
240,173 + CSW01_01240 0.78 -1.2
240,173 + CSW01_01240 0.78 -5.1
240,181 - CSW01_01240 0.79 -0.8
240,181 - CSW01_01240 0.79 -2.1
240,181 - CSW01_01240 0.79 +0.3
240,192 - CSW01_01240 0.80 +0.4
240,289 + CSW01_01240 0.89 +0.4
240,396 - +2.0
240,458 - +4.1
240,556 - CSW01_01245 0.15 +3.3
240,582 - CSW01_01245 0.17 +4.1
240,582 - CSW01_01245 0.17 +3.5
240,642 + CSW01_01245 0.23 +4.2
240,655 - CSW01_01245 0.24 +4.0
240,738 + CSW01_01245 0.32 +2.1
240,738 + CSW01_01245 0.32 +4.3
240,806 + CSW01_01245 0.39 +3.3
240,832 + CSW01_01245 0.41 +3.8
240,847 + CSW01_01245 0.43 +3.1
240,847 + CSW01_01245 0.43 -2.3
240,850 - CSW01_01245 0.43 +4.5
240,850 - CSW01_01245 0.43 +4.3
240,877 - CSW01_01245 0.46 +4.0
240,904 + CSW01_01245 0.48 -2.8
241,022 - CSW01_01245 0.60 +2.4
241,159 - CSW01_01245 0.73 +3.3
241,188 - CSW01_01245 0.76 +3.1
241,213 + CSW01_01245 0.78 +3.7
241,213 + CSW01_01245 0.78 +2.6
241,213 + CSW01_01245 0.78 +2.1
241,213 + CSW01_01245 0.78 +3.4
241,221 - CSW01_01245 0.79 +5.1
241,221 - CSW01_01245 0.79 +4.3
241,228 - CSW01_01245 0.79 +4.6
241,375 + +1.9
241,383 - +4.1
241,383 - +4.6
241,383 - +0.5
241,383 - +4.6
241,462 + +3.5
241,535 - +5.2
241,715 + CSW01_01250 0.23 +3.9
241,715 + CSW01_01250 0.23 +4.8
241,715 + CSW01_01250 0.23 +4.7
241,715 + CSW01_01250 0.23 +5.0
241,715 + CSW01_01250 0.23 +4.8
241,715 + CSW01_01250 0.23 +4.6
241,715 + CSW01_01250 0.23 +4.2
241,715 + CSW01_01250 0.23 +4.5
241,715 + CSW01_01250 0.23 +4.7
241,715 + CSW01_01250 0.23 +4.9
241,715 + CSW01_01250 0.23 +4.3
241,715 + CSW01_01250 0.23 +4.5
241,715 + CSW01_01250 0.23 +4.6
241,715 + CSW01_01250 0.23 +4.5
241,715 + CSW01_01250 0.23 +4.5
241,715 + CSW01_01250 0.23 +5.7
241,715 + CSW01_01250 0.23 +4.9
241,715 + CSW01_01250 0.23 +4.0
241,715 + CSW01_01250 0.23 +4.7
241,715 + CSW01_01250 0.23 +4.6
241,715 + CSW01_01250 0.23 +5.1
241,715 + CSW01_01250 0.23 +4.7
241,715 + CSW01_01250 0.23 +5.0
241,715 + CSW01_01250 0.23 +4.4
241,715 - CSW01_01250 0.23 +4.7
241,715 - CSW01_01250 0.23 +4.7
241,723 - CSW01_01250 0.24 +4.9
241,723 - CSW01_01250 0.24 +5.5
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +5.5
241,723 - CSW01_01250 0.24 +4.8
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +4.8
241,723 - CSW01_01250 0.24 +4.4
241,723 - CSW01_01250 0.24 +6.2
241,723 - CSW01_01250 0.24 +5.3
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +5.1
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +5.0
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +4.3
241,723 - CSW01_01250 0.24 +5.2
241,723 - CSW01_01250 0.24 +5.1
241,725 + CSW01_01250 0.24 +5.3
241,735 - CSW01_01250 0.25 +5.2
241,735 - CSW01_01250 0.25 +5.2
241,740 - CSW01_01250 0.25 +4.3
241,818 + CSW01_01250 0.32 +4.2
241,824 - CSW01_01250 0.32 +5.0
241,846 + CSW01_01250 0.34 +4.9
241,846 + CSW01_01250 0.34 +4.8
241,846 + CSW01_01250 0.34 +5.2
241,854 - CSW01_01250 0.35 +5.7
241,854 - CSW01_01250 0.35 +4.8
241,854 - CSW01_01250 0.35 +5.1
241,872 - CSW01_01250 0.36 +5.0
241,873 - CSW01_01250 0.36 +5.2
241,879 - CSW01_01250 0.37 +5.1
241,971 - CSW01_01250 0.44 +4.9
242,059 + CSW01_01250 0.52 +5.1
242,089 + CSW01_01250 0.54 +4.9
242,089 + CSW01_01250 0.54 +4.9
242,089 + CSW01_01250 0.54 +5.1
242,089 + CSW01_01250 0.54 +4.9
242,089 + CSW01_01250 0.54 +4.8
242,089 + CSW01_01250 0.54 +4.6
242,089 + CSW01_01250 0.54 +5.7
242,089 + CSW01_01250 0.54 +4.7
242,089 + CSW01_01250 0.54 +4.5
242,089 + CSW01_01250 0.54 +4.6
242,089 + CSW01_01250 0.54 +5.0
242,089 + CSW01_01250 0.54 +4.3
242,097 - CSW01_01250 0.55 +5.1
242,097 - CSW01_01250 0.55 +4.6
242,097 - CSW01_01250 0.55 +5.0
242,097 - CSW01_01250 0.55 +5.2
242,097 - CSW01_01250 0.55 +4.8
242,097 - CSW01_01250 0.55 +5.6
242,097 - CSW01_01250 0.55 +5.3
242,097 - CSW01_01250 0.55 +4.5
242,097 - CSW01_01250 0.55 +4.7
242,097 - CSW01_01250 0.55 +5.6
242,097 - CSW01_01250 0.55 +4.7
242,097 - CSW01_01250 0.55 +4.8
242,114 - CSW01_01250 0.56 +4.7
242,114 - CSW01_01250 0.56 +5.1
242,114 - CSW01_01250 0.56 +4.4
242,115 - CSW01_01250 0.56 +4.9
242,116 - CSW01_01250 0.56 +5.0
242,116 - CSW01_01250 0.56 +5.1
242,121 - CSW01_01250 0.57 +5.0
242,123 - CSW01_01250 0.57 +5.5
242,182 + CSW01_01250 0.62 +3.6
242,182 + CSW01_01250 0.62 +4.9
242,182 + CSW01_01250 0.62 +5.1
242,183 + CSW01_01250 0.62 +5.5
242,183 + CSW01_01250 0.62 +5.1
242,190 - CSW01_01250 0.63 +4.8
242,190 - CSW01_01250 0.63 +5.5
242,228 + CSW01_01250 0.66 +4.7
242,228 + CSW01_01250 0.66 +4.4
242,228 + CSW01_01250 0.66 +5.4
242,236 - CSW01_01250 0.67 +4.7
242,275 + CSW01_01250 0.70 +4.7
242,296 + CSW01_01250 0.71 +4.7
242,318 - CSW01_01250 0.73 +4.6
242,319 - CSW01_01250 0.73 +4.6
242,365 + CSW01_01250 0.77 +5.1
242,365 + CSW01_01250 0.77 +5.1
242,372 + CSW01_01250 0.78 +4.6
242,372 + CSW01_01250 0.78 +4.6
242,372 + CSW01_01250 0.78 +5.0
242,373 - CSW01_01250 0.78 +4.8
242,373 - CSW01_01250 0.78 +5.0
242,375 + CSW01_01250 0.78 +4.7
242,375 + CSW01_01250 0.78 +4.8
242,375 + CSW01_01250 0.78 +4.9
242,375 + CSW01_01250 0.78 +5.2
242,377 + CSW01_01250 0.78 +5.0
242,377 + CSW01_01250 0.78 +4.9
242,377 + CSW01_01250 0.78 +5.2
242,377 + CSW01_01250 0.78 +4.6
242,377 + CSW01_01250 0.78 +4.4
242,377 + CSW01_01250 0.78 +4.4
242,383 - CSW01_01250 0.79 +5.0
242,383 - CSW01_01250 0.79 +5.2
242,385 + CSW01_01250 0.79 +4.6
242,385 - CSW01_01250 0.79 +5.0
242,385 - CSW01_01250 0.79 +4.9
242,385 - CSW01_01250 0.79 +4.5

Or see this region's nucleotide sequence