Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01095

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01085 and CSW01_01090 are separated by 42 nucleotidesCSW01_01090 and CSW01_01095 overlap by 19 nucleotidesCSW01_01095 and CSW01_01100 are separated by 30 nucleotides CSW01_01085: CSW01_01085 - MurR/RpiR family transcriptional regulator, at 212,441 to 213,289 _01085 CSW01_01090: CSW01_01090 - hypothetical protein, at 213,332 to 213,523 _01090 CSW01_01095: CSW01_01095 - N-acetylmuramic acid 6-phosphate etherase, at 213,505 to 214,422 _01095 CSW01_01100: CSW01_01100 - PTS N-acetylmuramic acid EIIBC component, at 214,453 to 215,898 _01100 Position (kb) 213 214 215Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 212.506 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.509 kb on + strandat 212.517 kb on - strandat 212.551 kb on - strand, within CSW01_01085at 212.579 kb on - strand, within CSW01_01085at 212.598 kb on + strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.606 kb on - strand, within CSW01_01085at 212.664 kb on - strand, within CSW01_01085at 212.697 kb on - strand, within CSW01_01085at 212.746 kb on + strand, within CSW01_01085at 212.746 kb on + strand, within CSW01_01085at 212.754 kb on - strand, within CSW01_01085at 212.770 kb on - strand, within CSW01_01085at 212.787 kb on + strand, within CSW01_01085at 212.795 kb on - strand, within CSW01_01085at 212.809 kb on + strand, within CSW01_01085at 212.809 kb on + strand, within CSW01_01085at 212.820 kb on + strand, within CSW01_01085at 212.820 kb on + strand, within CSW01_01085at 212.828 kb on - strand, within CSW01_01085at 212.838 kb on - strand, within CSW01_01085at 212.857 kb on + strand, within CSW01_01085at 212.860 kb on - strand, within CSW01_01085at 212.865 kb on - strand, within CSW01_01085at 212.929 kb on + strand, within CSW01_01085at 212.970 kb on + strand, within CSW01_01085at 212.978 kb on - strand, within CSW01_01085at 213.018 kb on + strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.040 kb on - strand, within CSW01_01085at 213.063 kb on + strand, within CSW01_01085at 213.098 kb on + strand, within CSW01_01085at 213.149 kb on + strand, within CSW01_01085at 213.189 kb on + strand, within CSW01_01085at 213.280 kb on - strandat 213.523 kb on - strandat 213.523 kb on - strandat 213.554 kb on + strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.562 kb on - strandat 213.576 kb on + strandat 213.576 kb on + strandat 213.695 kb on - strand, within CSW01_01095at 213.762 kb on + strand, within CSW01_01095at 213.792 kb on + strand, within CSW01_01095at 213.792 kb on - strand, within CSW01_01095at 213.802 kb on + strand, within CSW01_01095at 213.814 kb on + strand, within CSW01_01095at 213.827 kb on - strand, within CSW01_01095at 213.878 kb on + strand, within CSW01_01095at 213.891 kb on - strand, within CSW01_01095at 213.925 kb on + strand, within CSW01_01095at 213.929 kb on - strand, within CSW01_01095at 213.930 kb on + strand, within CSW01_01095at 213.950 kb on + strand, within CSW01_01095at 213.973 kb on + strand, within CSW01_01095at 213.974 kb on - strand, within CSW01_01095at 213.981 kb on - strand, within CSW01_01095at 213.990 kb on + strand, within CSW01_01095at 213.994 kb on + strand, within CSW01_01095at 213.996 kb on - strand, within CSW01_01095at 214.002 kb on - strand, within CSW01_01095at 214.017 kb on - strand, within CSW01_01095at 214.027 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.052 kb on - strand, within CSW01_01095at 214.180 kb on + strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.188 kb on - strand, within CSW01_01095at 214.203 kb on + strand, within CSW01_01095at 214.215 kb on - strand, within CSW01_01095at 214.245 kb on + strand, within CSW01_01095at 214.264 kb on + strand, within CSW01_01095at 214.314 kb on + strand, within CSW01_01095at 214.314 kb on + strand, within CSW01_01095at 214.322 kb on - strand, within CSW01_01095at 214.347 kb on + strandat 214.347 kb on + strandat 214.352 kb on + strandat 214.355 kb on - strandat 214.355 kb on - strandat 214.355 kb on - strandat 214.357 kb on + strandat 214.365 kb on - strandat 214.365 kb on - strandat 214.383 kb on + strandat 214.390 kb on + strandat 214.390 kb on + strandat 214.390 kb on + strandat 214.391 kb on - strandat 214.398 kb on - strandat 214.398 kb on - strandat 214.398 kb on - strandat 214.440 kb on - strandat 214.486 kb on + strandat 214.558 kb on - strandat 214.628 kb on - strand, within CSW01_01100at 214.628 kb on - strand, within CSW01_01100at 214.721 kb on + strand, within CSW01_01100at 214.729 kb on - strand, within CSW01_01100at 214.739 kb on - strand, within CSW01_01100at 214.739 kb on - strand, within CSW01_01100at 214.809 kb on - strand, within CSW01_01100at 214.878 kb on + strand, within CSW01_01100at 214.883 kb on - strand, within CSW01_01100at 214.886 kb on - strand, within CSW01_01100at 214.902 kb on + strand, within CSW01_01100at 214.915 kb on + strand, within CSW01_01100at 214.924 kb on - strand, within CSW01_01100at 214.932 kb on + strand, within CSW01_01100at 214.971 kb on - strand, within CSW01_01100at 215.041 kb on - strand, within CSW01_01100at 215.046 kb on - strand, within CSW01_01100at 215.078 kb on + strand, within CSW01_01100at 215.086 kb on - strand, within CSW01_01100at 215.116 kb on - strand, within CSW01_01100at 215.138 kb on + strand, within CSW01_01100at 215.224 kb on - strand, within CSW01_01100at 215.255 kb on - strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.319 kb on + strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.327 kb on - strand, within CSW01_01100at 215.409 kb on + strand, within CSW01_01100

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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212,506 + +0.6
212,509 + +1.2
212,509 + -2.9
212,509 + +0.8
212,509 + +1.6
212,517 - +0.7
212,551 - CSW01_01085 0.13 -1.7
212,579 - CSW01_01085 0.16 -3.3
212,598 + CSW01_01085 0.18 +1.1
212,606 - CSW01_01085 0.19 +0.6
212,606 - CSW01_01085 0.19 -3.3
212,606 - CSW01_01085 0.19 -0.9
212,664 - CSW01_01085 0.26 -3.1
212,697 - CSW01_01085 0.30 -0.3
212,746 + CSW01_01085 0.36 -0.2
212,746 + CSW01_01085 0.36 +1.7
212,754 - CSW01_01085 0.37 +0.0
212,770 - CSW01_01085 0.39 +0.4
212,787 + CSW01_01085 0.41 +0.5
212,795 - CSW01_01085 0.42 -2.6
212,809 + CSW01_01085 0.43 +0.6
212,809 + CSW01_01085 0.43 +1.1
212,820 + CSW01_01085 0.45 +0.7
212,820 + CSW01_01085 0.45 +1.3
212,828 - CSW01_01085 0.46 -0.5
212,838 - CSW01_01085 0.47 +1.7
212,857 + CSW01_01085 0.49 -3.0
212,860 - CSW01_01085 0.49 -1.4
212,865 - CSW01_01085 0.50 +1.1
212,929 + CSW01_01085 0.57 -1.5
212,970 + CSW01_01085 0.62 -0.3
212,978 - CSW01_01085 0.63 -3.2
213,018 + CSW01_01085 0.68 +0.6
213,040 - CSW01_01085 0.71 +0.3
213,040 - CSW01_01085 0.71 +0.1
213,040 - CSW01_01085 0.71 -0.6
213,063 + CSW01_01085 0.73 +0.2
213,098 + CSW01_01085 0.77 +0.6
213,149 + CSW01_01085 0.83 +0.3
213,189 + CSW01_01085 0.88 -0.5
213,280 - -2.3
213,523 - -0.3
213,523 - +0.5
213,554 + -0.4
213,562 - -0.1
213,562 - +1.1
213,562 - -2.5
213,576 + -1.1
213,576 + +0.7
213,695 - CSW01_01095 0.21 +0.4
213,762 + CSW01_01095 0.28 +1.1
213,792 + CSW01_01095 0.31 +1.2
213,792 - CSW01_01095 0.31 +0.8
213,802 + CSW01_01095 0.32 +2.4
213,814 + CSW01_01095 0.34 +0.6
213,827 - CSW01_01095 0.35 +1.7
213,878 + CSW01_01095 0.41 +0.6
213,891 - CSW01_01095 0.42 -0.1
213,925 + CSW01_01095 0.46 -2.9
213,929 - CSW01_01095 0.46 +1.5
213,930 + CSW01_01095 0.46 -3.0
213,950 + CSW01_01095 0.48 -2.9
213,973 + CSW01_01095 0.51 -0.8
213,974 - CSW01_01095 0.51 +1.3
213,981 - CSW01_01095 0.52 +1.1
213,990 + CSW01_01095 0.53 +0.2
213,994 + CSW01_01095 0.53 +0.4
213,996 - CSW01_01095 0.53 -2.2
214,002 - CSW01_01095 0.54 +0.0
214,017 - CSW01_01095 0.56 -1.6
214,027 - CSW01_01095 0.57 -0.8
214,052 - CSW01_01095 0.60 +0.9
214,052 - CSW01_01095 0.60 +0.1
214,180 + CSW01_01095 0.74 +0.4
214,188 - CSW01_01095 0.74 +0.2
214,188 - CSW01_01095 0.74 +1.5
214,203 + CSW01_01095 0.76 -2.0
214,215 - CSW01_01095 0.77 -0.1
214,245 + CSW01_01095 0.81 -4.0
214,264 + CSW01_01095 0.83 +1.5
214,314 + CSW01_01095 0.88 -3.5
214,314 + CSW01_01095 0.88 -0.9
214,322 - CSW01_01095 0.89 +0.2
214,347 + -1.1
214,347 + -0.1
214,352 + -0.8
214,355 - -1.5
214,355 - +0.3
214,355 - -1.3
214,357 + -3.6
214,365 - +1.9
214,365 - +1.6
214,383 + +0.4
214,390 + -1.2
214,390 + -0.1
214,390 + -3.9
214,391 - -4.0
214,398 - -0.5
214,398 - +0.8
214,398 - -0.3
214,440 - +0.7
214,486 + +0.9
214,558 - -2.0
214,628 - CSW01_01100 0.12 -1.0
214,628 - CSW01_01100 0.12 -2.2
214,721 + CSW01_01100 0.19 +1.0
214,729 - CSW01_01100 0.19 +2.2
214,739 - CSW01_01100 0.20 +1.1
214,739 - CSW01_01100 0.20 -1.6
214,809 - CSW01_01100 0.25 -3.2
214,878 + CSW01_01100 0.29 -1.2
214,883 - CSW01_01100 0.30 +1.5
214,886 - CSW01_01100 0.30 +1.2
214,902 + CSW01_01100 0.31 +0.7
214,915 + CSW01_01100 0.32 +0.7
214,924 - CSW01_01100 0.33 -0.6
214,932 + CSW01_01100 0.33 -2.5
214,971 - CSW01_01100 0.36 +0.6
215,041 - CSW01_01100 0.41 -4.6
215,046 - CSW01_01100 0.41 -0.2
215,078 + CSW01_01100 0.43 -0.6
215,086 - CSW01_01100 0.44 -0.4
215,116 - CSW01_01100 0.46 +0.3
215,138 + CSW01_01100 0.47 -0.3
215,224 - CSW01_01100 0.53 -0.5
215,255 - CSW01_01100 0.55 +1.0
215,319 + CSW01_01100 0.60 -0.9
215,319 + CSW01_01100 0.60 -3.3
215,319 + CSW01_01100 0.60 +0.3
215,319 + CSW01_01100 0.60 -4.5
215,319 + CSW01_01100 0.60 -0.5
215,319 + CSW01_01100 0.60 -3.0
215,319 + CSW01_01100 0.60 +0.1
215,319 + CSW01_01100 0.60 -0.8
215,327 - CSW01_01100 0.60 -1.6
215,327 - CSW01_01100 0.60 +0.3
215,327 - CSW01_01100 0.60 +0.7
215,327 - CSW01_01100 0.60 +0.3
215,327 - CSW01_01100 0.60 -4.5
215,327 - CSW01_01100 0.60 -2.2
215,327 - CSW01_01100 0.60 +0.2
215,327 - CSW01_01100 0.60 -1.9
215,327 - CSW01_01100 0.60 -2.9
215,409 + CSW01_01100 0.66 -0.0

Or see this region's nucleotide sequence