Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_01070

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_01065 and CSW01_01070 are separated by 130 nucleotidesCSW01_01070 and CSW01_01075 overlap by 10 nucleotidesCSW01_01075 and CSW01_01080 overlap by 4 nucleotides CSW01_01065: CSW01_01065 - TonB-dependent siderophore receptor, at 206,434 to 208,590 _01065 CSW01_01070: CSW01_01070 - ABC transporter ATP-binding protein, at 208,721 to 209,506 _01070 CSW01_01075: CSW01_01075 - iron(III) ABC transporter substrate-binding protein, at 209,497 to 210,456 _01075 CSW01_01080: CSW01_01080 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 210,453 to 212,414 _01080 Position (kb) 208 209 210Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 207.776 kb on - strand, within CSW01_01065at 207.794 kb on + strand, within CSW01_01065at 207.797 kb on - strand, within CSW01_01065at 207.802 kb on - strand, within CSW01_01065at 207.869 kb on - strand, within CSW01_01065at 207.901 kb on + strand, within CSW01_01065at 207.914 kb on - strand, within CSW01_01065at 207.932 kb on + strand, within CSW01_01065at 207.934 kb on + strand, within CSW01_01065at 207.934 kb on - strand, within CSW01_01065at 207.935 kb on - strand, within CSW01_01065at 207.942 kb on - strand, within CSW01_01065at 207.956 kb on + strand, within CSW01_01065at 207.956 kb on + strand, within CSW01_01065at 207.956 kb on + strand, within CSW01_01065at 207.956 kb on + strand, within CSW01_01065at 207.964 kb on - strand, within CSW01_01065at 207.964 kb on - strand, within CSW01_01065at 207.964 kb on - strand, within CSW01_01065at 207.966 kb on + strand, within CSW01_01065at 207.971 kb on + strand, within CSW01_01065at 207.974 kb on - strand, within CSW01_01065at 207.974 kb on - strand, within CSW01_01065at 207.974 kb on - strand, within CSW01_01065at 207.979 kb on - strand, within CSW01_01065at 207.984 kb on + strand, within CSW01_01065at 207.997 kb on - strand, within CSW01_01065at 208.007 kb on - strand, within CSW01_01065at 208.030 kb on - strand, within CSW01_01065at 208.041 kb on + strand, within CSW01_01065at 208.076 kb on - strand, within CSW01_01065at 208.081 kb on - strand, within CSW01_01065at 208.108 kb on + strand, within CSW01_01065at 208.202 kb on + strand, within CSW01_01065at 208.210 kb on - strand, within CSW01_01065at 208.225 kb on + strand, within CSW01_01065at 208.302 kb on - strand, within CSW01_01065at 208.302 kb on - strand, within CSW01_01065at 208.314 kb on + strand, within CSW01_01065at 208.322 kb on - strand, within CSW01_01065at 208.332 kb on + strand, within CSW01_01065at 208.335 kb on - strand, within CSW01_01065at 208.358 kb on + strand, within CSW01_01065at 208.377 kb on - strandat 208.391 kb on - strandat 208.417 kb on - strandat 208.424 kb on + strandat 208.424 kb on + strandat 208.424 kb on + strandat 208.424 kb on + strandat 208.424 kb on + strandat 208.430 kb on - strandat 208.431 kb on - strandat 208.431 kb on - strandat 208.432 kb on - strandat 208.432 kb on - strandat 208.432 kb on - strandat 208.432 kb on - strandat 208.432 kb on - strandat 208.437 kb on - strandat 208.477 kb on + strandat 208.557 kb on - strandat 208.561 kb on + strandat 208.566 kb on + strandat 208.567 kb on - strandat 208.567 kb on - strandat 208.569 kb on - strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.571 kb on + strandat 208.574 kb on - strandat 208.579 kb on - strandat 208.608 kb on - strandat 208.608 kb on - strandat 208.631 kb on + strandat 208.797 kb on + strandat 208.798 kb on - strandat 208.804 kb on + strand, within CSW01_01070at 208.852 kb on - strand, within CSW01_01070at 208.862 kb on - strand, within CSW01_01070at 208.946 kb on + strand, within CSW01_01070at 208.985 kb on + strand, within CSW01_01070at 208.985 kb on + strand, within CSW01_01070at 208.992 kb on - strand, within CSW01_01070at 208.994 kb on - strand, within CSW01_01070at 209.037 kb on + strand, within CSW01_01070at 209.044 kb on - strand, within CSW01_01070at 209.136 kb on + strand, within CSW01_01070at 209.279 kb on - strand, within CSW01_01070at 209.311 kb on + strand, within CSW01_01070at 209.321 kb on + strand, within CSW01_01070at 209.326 kb on + strand, within CSW01_01070at 209.334 kb on - strand, within CSW01_01070at 209.334 kb on - strand, within CSW01_01070at 209.334 kb on - strand, within CSW01_01070at 209.349 kb on + strand, within CSW01_01070at 209.349 kb on - strand, within CSW01_01070at 209.358 kb on - strand, within CSW01_01070at 209.428 kb on - strandat 209.428 kb on - strandat 209.485 kb on + strandat 209.600 kb on - strand, within CSW01_01075at 209.600 kb on - strand, within CSW01_01075at 209.639 kb on + strand, within CSW01_01075at 209.639 kb on + strand, within CSW01_01075at 209.650 kb on + strand, within CSW01_01075at 209.658 kb on - strand, within CSW01_01075at 209.668 kb on - strand, within CSW01_01075at 209.668 kb on - strand, within CSW01_01075at 209.673 kb on + strand, within CSW01_01075at 209.673 kb on + strand, within CSW01_01075at 209.673 kb on + strand, within CSW01_01075at 209.681 kb on - strand, within CSW01_01075at 209.681 kb on - strand, within CSW01_01075at 209.681 kb on - strand, within CSW01_01075at 209.683 kb on - strand, within CSW01_01075at 209.685 kb on + strand, within CSW01_01075at 209.704 kb on - strand, within CSW01_01075at 209.704 kb on - strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.753 kb on + strand, within CSW01_01075at 209.758 kb on + strand, within CSW01_01075at 209.758 kb on + strand, within CSW01_01075at 209.772 kb on + strand, within CSW01_01075at 209.782 kb on + strand, within CSW01_01075at 209.806 kb on - strand, within CSW01_01075at 209.806 kb on - strand, within CSW01_01075at 209.884 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.885 kb on + strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.893 kb on - strand, within CSW01_01075at 209.934 kb on + strand, within CSW01_01075at 209.934 kb on + strand, within CSW01_01075at 209.942 kb on - strand, within CSW01_01075at 209.942 kb on - strand, within CSW01_01075at 209.942 kb on - strand, within CSW01_01075at 209.944 kb on + strand, within CSW01_01075at 209.964 kb on + strand, within CSW01_01075at 209.972 kb on - strand, within CSW01_01075at 210.045 kb on + strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.053 kb on - strand, within CSW01_01075at 210.055 kb on + strand, within CSW01_01075at 210.078 kb on + strand, within CSW01_01075at 210.078 kb on + strand, within CSW01_01075at 210.078 kb on + strand, within CSW01_01075at 210.086 kb on - strand, within CSW01_01075at 210.086 kb on - strand, within CSW01_01075at 210.086 kb on - strand, within CSW01_01075at 210.124 kb on + strand, within CSW01_01075at 210.132 kb on - strand, within CSW01_01075at 210.132 kb on - strand, within CSW01_01075at 210.161 kb on + strand, within CSW01_01075at 210.161 kb on + strand, within CSW01_01075at 210.162 kb on + strand, within CSW01_01075at 210.169 kb on - strand, within CSW01_01075at 210.169 kb on - strand, within CSW01_01075at 210.171 kb on + strand, within CSW01_01075at 210.195 kb on - strand, within CSW01_01075at 210.218 kb on - strand, within CSW01_01075at 210.218 kb on - strand, within CSW01_01075at 210.220 kb on + strand, within CSW01_01075at 210.248 kb on + strand, within CSW01_01075at 210.260 kb on + strand, within CSW01_01075at 210.321 kb on - strand, within CSW01_01075at 210.342 kb on + strand, within CSW01_01075at 210.351 kb on + strand, within CSW01_01075at 210.370 kb on + strandat 210.370 kb on + strandat 210.370 kb on + strandat 210.370 kb on + strandat 210.378 kb on - strandat 210.384 kb on - strandat 210.399 kb on + strandat 210.455 kb on - strandat 210.498 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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207,776 - CSW01_01065 0.62 +0.0
207,794 + CSW01_01065 0.63 -1.5
207,797 - CSW01_01065 0.63 +0.3
207,802 - CSW01_01065 0.63 +0.6
207,869 - CSW01_01065 0.67 -3.8
207,901 + CSW01_01065 0.68 +1.2
207,914 - CSW01_01065 0.69 +0.4
207,932 + CSW01_01065 0.69 -3.2
207,934 + CSW01_01065 0.70 -0.1
207,934 - CSW01_01065 0.70 -1.0
207,935 - CSW01_01065 0.70 +1.2
207,942 - CSW01_01065 0.70 -4.3
207,956 + CSW01_01065 0.71 +1.1
207,956 + CSW01_01065 0.71 +0.8
207,956 + CSW01_01065 0.71 +1.1
207,956 + CSW01_01065 0.71 +0.5
207,964 - CSW01_01065 0.71 +1.6
207,964 - CSW01_01065 0.71 +1.1
207,964 - CSW01_01065 0.71 -3.0
207,966 + CSW01_01065 0.71 -2.0
207,971 + CSW01_01065 0.71 -0.2
207,974 - CSW01_01065 0.71 +0.3
207,974 - CSW01_01065 0.71 -2.8
207,974 - CSW01_01065 0.71 -4.0
207,979 - CSW01_01065 0.72 -1.0
207,984 + CSW01_01065 0.72 -4.5
207,997 - CSW01_01065 0.72 -0.1
208,007 - CSW01_01065 0.73 +0.0
208,030 - CSW01_01065 0.74 -3.6
208,041 + CSW01_01065 0.75 -0.4
208,076 - CSW01_01065 0.76 +0.3
208,081 - CSW01_01065 0.76 -4.7
208,108 + CSW01_01065 0.78 -0.0
208,202 + CSW01_01065 0.82 -1.1
208,210 - CSW01_01065 0.82 -1.0
208,225 + CSW01_01065 0.83 +2.1
208,302 - CSW01_01065 0.87 +1.1
208,302 - CSW01_01065 0.87 -0.4
208,314 + CSW01_01065 0.87 +0.4
208,322 - CSW01_01065 0.88 -0.5
208,332 + CSW01_01065 0.88 +0.7
208,335 - CSW01_01065 0.88 -0.1
208,358 + CSW01_01065 0.89 +0.4
208,377 - -2.5
208,391 - +0.1
208,417 - -2.2
208,424 + +1.8
208,424 + +0.9
208,424 + +0.9
208,424 + -1.1
208,424 + +0.9
208,430 - +0.9
208,431 - -0.6
208,431 - -3.0
208,432 - -2.8
208,432 - +0.7
208,432 - -1.0
208,432 - -2.1
208,432 - -0.8
208,437 - -2.5
208,477 + +0.5
208,557 - +1.1
208,561 + +1.7
208,566 + +2.1
208,567 - +1.4
208,567 - -4.6
208,569 - -0.6
208,571 + +0.7
208,571 + +0.2
208,571 + +1.1
208,571 + -0.6
208,571 + +0.9
208,571 + +0.9
208,571 + -0.1
208,574 - +0.3
208,579 - +1.1
208,608 - -0.5
208,608 - -4.1
208,631 + +1.3
208,797 + +1.0
208,798 - +1.5
208,804 + CSW01_01070 0.11 +0.3
208,852 - CSW01_01070 0.17 -0.1
208,862 - CSW01_01070 0.18 -0.7
208,946 + CSW01_01070 0.29 +0.9
208,985 + CSW01_01070 0.34 +0.1
208,985 + CSW01_01070 0.34 -3.3
208,992 - CSW01_01070 0.34 -1.2
208,994 - CSW01_01070 0.35 -1.3
209,037 + CSW01_01070 0.40 +1.7
209,044 - CSW01_01070 0.41 -0.7
209,136 + CSW01_01070 0.53 -2.7
209,279 - CSW01_01070 0.71 -1.0
209,311 + CSW01_01070 0.75 -4.8
209,321 + CSW01_01070 0.76 -3.7
209,326 + CSW01_01070 0.77 +0.3
209,334 - CSW01_01070 0.78 -3.7
209,334 - CSW01_01070 0.78 +0.7
209,334 - CSW01_01070 0.78 -3.6
209,349 + CSW01_01070 0.80 -3.8
209,349 - CSW01_01070 0.80 -2.2
209,358 - CSW01_01070 0.81 -2.0
209,428 - +0.3
209,428 - -3.0
209,485 + -3.0
209,600 - CSW01_01075 0.11 -0.6
209,600 - CSW01_01075 0.11 -0.2
209,639 + CSW01_01075 0.15 +0.2
209,639 + CSW01_01075 0.15 +1.6
209,650 + CSW01_01075 0.16 +1.7
209,658 - CSW01_01075 0.17 +0.3
209,668 - CSW01_01075 0.18 -0.0
209,668 - CSW01_01075 0.18 +0.5
209,673 + CSW01_01075 0.18 -2.9
209,673 + CSW01_01075 0.18 -0.1
209,673 + CSW01_01075 0.18 -1.6
209,681 - CSW01_01075 0.19 +0.3
209,681 - CSW01_01075 0.19 -3.0
209,681 - CSW01_01075 0.19 +0.2
209,683 - CSW01_01075 0.19 -4.4
209,685 + CSW01_01075 0.20 -2.7
209,704 - CSW01_01075 0.22 +1.7
209,704 - CSW01_01075 0.22 +1.0
209,753 + CSW01_01075 0.27 +0.2
209,753 + CSW01_01075 0.27 +0.1
209,753 + CSW01_01075 0.27 +0.5
209,753 + CSW01_01075 0.27 +0.3
209,753 + CSW01_01075 0.27 +1.0
209,753 + CSW01_01075 0.27 +0.8
209,758 + CSW01_01075 0.27 -1.6
209,758 + CSW01_01075 0.27 +0.7
209,772 + CSW01_01075 0.29 +0.8
209,782 + CSW01_01075 0.30 -4.1
209,806 - CSW01_01075 0.32 +0.9
209,806 - CSW01_01075 0.32 +0.1
209,884 + CSW01_01075 0.40 +0.3
209,885 + CSW01_01075 0.40 +1.8
209,885 + CSW01_01075 0.40 -2.5
209,885 + CSW01_01075 0.40 +0.3
209,885 + CSW01_01075 0.40 -1.2
209,885 + CSW01_01075 0.40 -2.2
209,885 + CSW01_01075 0.40 +0.9
209,885 + CSW01_01075 0.40 +0.8
209,885 + CSW01_01075 0.40 -3.3
209,893 - CSW01_01075 0.41 -1.1
209,893 - CSW01_01075 0.41 +2.2
209,893 - CSW01_01075 0.41 +1.4
209,893 - CSW01_01075 0.41 +0.6
209,893 - CSW01_01075 0.41 -1.1
209,893 - CSW01_01075 0.41 +2.2
209,893 - CSW01_01075 0.41 -1.2
209,893 - CSW01_01075 0.41 +1.3
209,934 + CSW01_01075 0.46 -0.6
209,934 + CSW01_01075 0.46 -1.2
209,942 - CSW01_01075 0.46 -1.2
209,942 - CSW01_01075 0.46 +0.1
209,942 - CSW01_01075 0.46 -0.2
209,944 + CSW01_01075 0.47 +0.6
209,964 + CSW01_01075 0.49 -4.5
209,972 - CSW01_01075 0.49 +0.4
210,045 + CSW01_01075 0.57 -0.1
210,053 - CSW01_01075 0.58 -1.4
210,053 - CSW01_01075 0.58 +2.1
210,053 - CSW01_01075 0.58 +1.1
210,053 - CSW01_01075 0.58 +1.0
210,055 + CSW01_01075 0.58 -1.8
210,078 + CSW01_01075 0.61 -0.1
210,078 + CSW01_01075 0.61 +0.8
210,078 + CSW01_01075 0.61 -4.0
210,086 - CSW01_01075 0.61 -1.8
210,086 - CSW01_01075 0.61 -1.3
210,086 - CSW01_01075 0.61 -1.2
210,124 + CSW01_01075 0.65 -3.4
210,132 - CSW01_01075 0.66 +0.8
210,132 - CSW01_01075 0.66 -0.6
210,161 + CSW01_01075 0.69 +0.8
210,161 + CSW01_01075 0.69 -0.3
210,162 + CSW01_01075 0.69 +2.0
210,169 - CSW01_01075 0.70 -2.9
210,169 - CSW01_01075 0.70 -1.7
210,171 + CSW01_01075 0.70 +0.1
210,195 - CSW01_01075 0.73 -2.6
210,218 - CSW01_01075 0.75 +0.4
210,218 - CSW01_01075 0.75 -2.6
210,220 + CSW01_01075 0.75 +0.2
210,248 + CSW01_01075 0.78 -3.2
210,260 + CSW01_01075 0.79 -1.0
210,321 - CSW01_01075 0.86 -0.7
210,342 + CSW01_01075 0.88 +1.2
210,351 + CSW01_01075 0.89 +0.8
210,370 + -2.1
210,370 + -1.6
210,370 + -4.4
210,370 + +0.2
210,378 - -2.9
210,384 - -3.2
210,399 + -0.4
210,455 - -0.2
210,498 - -1.5

Or see this region's nucleotide sequence