Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_01065 and CSW01_01070 are separated by 130 nucleotides CSW01_01070 and CSW01_01075 overlap by 10 nucleotides CSW01_01075 and CSW01_01080 overlap by 4 nucleotides
CSW01_01065: CSW01_01065 - TonB-dependent siderophore receptor, at 206,434 to 208,590
_01065
CSW01_01070: CSW01_01070 - ABC transporter ATP-binding protein, at 208,721 to 209,506
_01070
CSW01_01075: CSW01_01075 - iron(III) ABC transporter substrate-binding protein, at 209,497 to 210,456
_01075
CSW01_01080: CSW01_01080 - Fe(3+)-hydroxamate ABC transporter permease FhuB, at 210,453 to 212,414
_01080
Position (kb)
208
209
210 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 207.776 kb on - strand, within CSW01_01065 at 207.794 kb on + strand, within CSW01_01065 at 207.797 kb on - strand, within CSW01_01065 at 207.802 kb on - strand, within CSW01_01065 at 207.869 kb on - strand, within CSW01_01065 at 207.901 kb on + strand, within CSW01_01065 at 207.914 kb on - strand, within CSW01_01065 at 207.932 kb on + strand, within CSW01_01065 at 207.934 kb on + strand, within CSW01_01065 at 207.934 kb on - strand, within CSW01_01065 at 207.935 kb on - strand, within CSW01_01065 at 207.942 kb on - strand, within CSW01_01065 at 207.956 kb on + strand, within CSW01_01065 at 207.956 kb on + strand, within CSW01_01065 at 207.956 kb on + strand, within CSW01_01065 at 207.956 kb on + strand, within CSW01_01065 at 207.964 kb on - strand, within CSW01_01065 at 207.964 kb on - strand, within CSW01_01065 at 207.964 kb on - strand, within CSW01_01065 at 207.966 kb on + strand, within CSW01_01065 at 207.971 kb on + strand, within CSW01_01065 at 207.974 kb on - strand, within CSW01_01065 at 207.974 kb on - strand, within CSW01_01065 at 207.974 kb on - strand, within CSW01_01065 at 207.979 kb on - strand, within CSW01_01065 at 207.984 kb on + strand, within CSW01_01065 at 207.997 kb on - strand, within CSW01_01065 at 208.007 kb on - strand, within CSW01_01065 at 208.030 kb on - strand, within CSW01_01065 at 208.041 kb on + strand, within CSW01_01065 at 208.076 kb on - strand, within CSW01_01065 at 208.081 kb on - strand, within CSW01_01065 at 208.108 kb on + strand, within CSW01_01065 at 208.202 kb on + strand, within CSW01_01065 at 208.210 kb on - strand, within CSW01_01065 at 208.225 kb on + strand, within CSW01_01065 at 208.302 kb on - strand, within CSW01_01065 at 208.302 kb on - strand, within CSW01_01065 at 208.314 kb on + strand, within CSW01_01065 at 208.322 kb on - strand, within CSW01_01065 at 208.332 kb on + strand, within CSW01_01065 at 208.335 kb on - strand, within CSW01_01065 at 208.358 kb on + strand, within CSW01_01065 at 208.377 kb on - strand at 208.391 kb on - strand at 208.417 kb on - strand at 208.424 kb on + strand at 208.424 kb on + strand at 208.424 kb on + strand at 208.424 kb on + strand at 208.424 kb on + strand at 208.430 kb on - strand at 208.431 kb on - strand at 208.431 kb on - strand at 208.432 kb on - strand at 208.432 kb on - strand at 208.432 kb on - strand at 208.432 kb on - strand at 208.432 kb on - strand at 208.437 kb on - strand at 208.477 kb on + strand at 208.557 kb on - strand at 208.561 kb on + strand at 208.566 kb on + strand at 208.567 kb on - strand at 208.567 kb on - strand at 208.569 kb on - strand at 208.571 kb on + strand at 208.571 kb on + strand at 208.571 kb on + strand at 208.571 kb on + strand at 208.571 kb on + strand at 208.571 kb on + strand at 208.571 kb on + strand at 208.574 kb on - strand at 208.579 kb on - strand at 208.608 kb on - strand at 208.608 kb on - strand at 208.631 kb on + strand at 208.797 kb on + strand at 208.798 kb on - strand at 208.804 kb on + strand, within CSW01_01070 at 208.852 kb on - strand, within CSW01_01070 at 208.862 kb on - strand, within CSW01_01070 at 208.946 kb on + strand, within CSW01_01070 at 208.985 kb on + strand, within CSW01_01070 at 208.985 kb on + strand, within CSW01_01070 at 208.992 kb on - strand, within CSW01_01070 at 208.994 kb on - strand, within CSW01_01070 at 209.037 kb on + strand, within CSW01_01070 at 209.044 kb on - strand, within CSW01_01070 at 209.136 kb on + strand, within CSW01_01070 at 209.279 kb on - strand, within CSW01_01070 at 209.311 kb on + strand, within CSW01_01070 at 209.321 kb on + strand, within CSW01_01070 at 209.326 kb on + strand, within CSW01_01070 at 209.334 kb on - strand, within CSW01_01070 at 209.334 kb on - strand, within CSW01_01070 at 209.334 kb on - strand, within CSW01_01070 at 209.349 kb on + strand, within CSW01_01070 at 209.349 kb on - strand, within CSW01_01070 at 209.358 kb on - strand, within CSW01_01070 at 209.428 kb on - strand at 209.428 kb on - strand at 209.485 kb on + strand at 209.600 kb on - strand, within CSW01_01075 at 209.600 kb on - strand, within CSW01_01075 at 209.639 kb on + strand, within CSW01_01075 at 209.639 kb on + strand, within CSW01_01075 at 209.650 kb on + strand, within CSW01_01075 at 209.658 kb on - strand, within CSW01_01075 at 209.668 kb on - strand, within CSW01_01075 at 209.668 kb on - strand, within CSW01_01075 at 209.673 kb on + strand, within CSW01_01075 at 209.673 kb on + strand, within CSW01_01075 at 209.673 kb on + strand, within CSW01_01075 at 209.681 kb on - strand, within CSW01_01075 at 209.681 kb on - strand, within CSW01_01075 at 209.681 kb on - strand, within CSW01_01075 at 209.683 kb on - strand, within CSW01_01075 at 209.685 kb on + strand, within CSW01_01075 at 209.704 kb on - strand, within CSW01_01075 at 209.704 kb on - strand, within CSW01_01075 at 209.753 kb on + strand, within CSW01_01075 at 209.753 kb on + strand, within CSW01_01075 at 209.753 kb on + strand, within CSW01_01075 at 209.753 kb on + strand, within CSW01_01075 at 209.753 kb on + strand, within CSW01_01075 at 209.753 kb on + strand, within CSW01_01075 at 209.758 kb on + strand, within CSW01_01075 at 209.758 kb on + strand, within CSW01_01075 at 209.772 kb on + strand, within CSW01_01075 at 209.782 kb on + strand, within CSW01_01075 at 209.806 kb on - strand, within CSW01_01075 at 209.806 kb on - strand, within CSW01_01075 at 209.884 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.885 kb on + strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.893 kb on - strand, within CSW01_01075 at 209.934 kb on + strand, within CSW01_01075 at 209.934 kb on + strand, within CSW01_01075 at 209.942 kb on - strand, within CSW01_01075 at 209.942 kb on - strand, within CSW01_01075 at 209.942 kb on - strand, within CSW01_01075 at 209.944 kb on + strand, within CSW01_01075 at 209.964 kb on + strand, within CSW01_01075 at 209.972 kb on - strand, within CSW01_01075 at 210.045 kb on + strand, within CSW01_01075 at 210.053 kb on - strand, within CSW01_01075 at 210.053 kb on - strand, within CSW01_01075 at 210.053 kb on - strand, within CSW01_01075 at 210.053 kb on - strand, within CSW01_01075 at 210.055 kb on + strand, within CSW01_01075 at 210.078 kb on + strand, within CSW01_01075 at 210.078 kb on + strand, within CSW01_01075 at 210.078 kb on + strand, within CSW01_01075 at 210.086 kb on - strand, within CSW01_01075 at 210.086 kb on - strand, within CSW01_01075 at 210.086 kb on - strand, within CSW01_01075 at 210.124 kb on + strand, within CSW01_01075 at 210.132 kb on - strand, within CSW01_01075 at 210.132 kb on - strand, within CSW01_01075 at 210.161 kb on + strand, within CSW01_01075 at 210.161 kb on + strand, within CSW01_01075 at 210.162 kb on + strand, within CSW01_01075 at 210.169 kb on - strand, within CSW01_01075 at 210.169 kb on - strand, within CSW01_01075 at 210.171 kb on + strand, within CSW01_01075 at 210.195 kb on - strand, within CSW01_01075 at 210.218 kb on - strand, within CSW01_01075 at 210.218 kb on - strand, within CSW01_01075 at 210.220 kb on + strand, within CSW01_01075 at 210.248 kb on + strand, within CSW01_01075 at 210.260 kb on + strand, within CSW01_01075 at 210.321 kb on - strand, within CSW01_01075 at 210.342 kb on + strand, within CSW01_01075 at 210.351 kb on + strand, within CSW01_01075 at 210.370 kb on + strand at 210.370 kb on + strand at 210.370 kb on + strand at 210.370 kb on + strand at 210.378 kb on - strand at 210.384 kb on - strand at 210.399 kb on + strand at 210.455 kb on - strand at 210.498 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 207,776 - CSW01_01065 0.62 +0.0 207,794 + CSW01_01065 0.63 -1.5 207,797 - CSW01_01065 0.63 +0.3 207,802 - CSW01_01065 0.63 +0.6 207,869 - CSW01_01065 0.67 -3.8 207,901 + CSW01_01065 0.68 +1.2 207,914 - CSW01_01065 0.69 +0.4 207,932 + CSW01_01065 0.69 -3.2 207,934 + CSW01_01065 0.70 -0.1 207,934 - CSW01_01065 0.70 -1.0 207,935 - CSW01_01065 0.70 +1.2 207,942 - CSW01_01065 0.70 -4.3 207,956 + CSW01_01065 0.71 +1.1 207,956 + CSW01_01065 0.71 +0.8 207,956 + CSW01_01065 0.71 +1.1 207,956 + CSW01_01065 0.71 +0.5 207,964 - CSW01_01065 0.71 +1.6 207,964 - CSW01_01065 0.71 +1.1 207,964 - CSW01_01065 0.71 -3.0 207,966 + CSW01_01065 0.71 -2.0 207,971 + CSW01_01065 0.71 -0.2 207,974 - CSW01_01065 0.71 +0.3 207,974 - CSW01_01065 0.71 -2.8 207,974 - CSW01_01065 0.71 -4.0 207,979 - CSW01_01065 0.72 -1.0 207,984 + CSW01_01065 0.72 -4.5 207,997 - CSW01_01065 0.72 -0.1 208,007 - CSW01_01065 0.73 +0.0 208,030 - CSW01_01065 0.74 -3.6 208,041 + CSW01_01065 0.75 -0.4 208,076 - CSW01_01065 0.76 +0.3 208,081 - CSW01_01065 0.76 -4.7 208,108 + CSW01_01065 0.78 -0.0 208,202 + CSW01_01065 0.82 -1.1 208,210 - CSW01_01065 0.82 -1.0 208,225 + CSW01_01065 0.83 +2.1 208,302 - CSW01_01065 0.87 +1.1 208,302 - CSW01_01065 0.87 -0.4 208,314 + CSW01_01065 0.87 +0.4 208,322 - CSW01_01065 0.88 -0.5 208,332 + CSW01_01065 0.88 +0.7 208,335 - CSW01_01065 0.88 -0.1 208,358 + CSW01_01065 0.89 +0.4 208,377 - -2.5 208,391 - +0.1 208,417 - -2.2 208,424 + +1.8 208,424 + +0.9 208,424 + +0.9 208,424 + -1.1 208,424 + +0.9 208,430 - +0.9 208,431 - -0.6 208,431 - -3.0 208,432 - -2.8 208,432 - +0.7 208,432 - -1.0 208,432 - -2.1 208,432 - -0.8 208,437 - -2.5 208,477 + +0.5 208,557 - +1.1 208,561 + +1.7 208,566 + +2.1 208,567 - +1.4 208,567 - -4.6 208,569 - -0.6 208,571 + +0.7 208,571 + +0.2 208,571 + +1.1 208,571 + -0.6 208,571 + +0.9 208,571 + +0.9 208,571 + -0.1 208,574 - +0.3 208,579 - +1.1 208,608 - -0.5 208,608 - -4.1 208,631 + +1.3 208,797 + +1.0 208,798 - +1.5 208,804 + CSW01_01070 0.11 +0.3 208,852 - CSW01_01070 0.17 -0.1 208,862 - CSW01_01070 0.18 -0.7 208,946 + CSW01_01070 0.29 +0.9 208,985 + CSW01_01070 0.34 +0.1 208,985 + CSW01_01070 0.34 -3.3 208,992 - CSW01_01070 0.34 -1.2 208,994 - CSW01_01070 0.35 -1.3 209,037 + CSW01_01070 0.40 +1.7 209,044 - CSW01_01070 0.41 -0.7 209,136 + CSW01_01070 0.53 -2.7 209,279 - CSW01_01070 0.71 -1.0 209,311 + CSW01_01070 0.75 -4.8 209,321 + CSW01_01070 0.76 -3.7 209,326 + CSW01_01070 0.77 +0.3 209,334 - CSW01_01070 0.78 -3.7 209,334 - CSW01_01070 0.78 +0.7 209,334 - CSW01_01070 0.78 -3.6 209,349 + CSW01_01070 0.80 -3.8 209,349 - CSW01_01070 0.80 -2.2 209,358 - CSW01_01070 0.81 -2.0 209,428 - +0.3 209,428 - -3.0 209,485 + -3.0 209,600 - CSW01_01075 0.11 -0.6 209,600 - CSW01_01075 0.11 -0.2 209,639 + CSW01_01075 0.15 +0.2 209,639 + CSW01_01075 0.15 +1.6 209,650 + CSW01_01075 0.16 +1.7 209,658 - CSW01_01075 0.17 +0.3 209,668 - CSW01_01075 0.18 -0.0 209,668 - CSW01_01075 0.18 +0.5 209,673 + CSW01_01075 0.18 -2.9 209,673 + CSW01_01075 0.18 -0.1 209,673 + CSW01_01075 0.18 -1.6 209,681 - CSW01_01075 0.19 +0.3 209,681 - CSW01_01075 0.19 -3.0 209,681 - CSW01_01075 0.19 +0.2 209,683 - CSW01_01075 0.19 -4.4 209,685 + CSW01_01075 0.20 -2.7 209,704 - CSW01_01075 0.22 +1.7 209,704 - CSW01_01075 0.22 +1.0 209,753 + CSW01_01075 0.27 +0.2 209,753 + CSW01_01075 0.27 +0.1 209,753 + CSW01_01075 0.27 +0.5 209,753 + CSW01_01075 0.27 +0.3 209,753 + CSW01_01075 0.27 +1.0 209,753 + CSW01_01075 0.27 +0.8 209,758 + CSW01_01075 0.27 -1.6 209,758 + CSW01_01075 0.27 +0.7 209,772 + CSW01_01075 0.29 +0.8 209,782 + CSW01_01075 0.30 -4.1 209,806 - CSW01_01075 0.32 +0.9 209,806 - CSW01_01075 0.32 +0.1 209,884 + CSW01_01075 0.40 +0.3 209,885 + CSW01_01075 0.40 +1.8 209,885 + CSW01_01075 0.40 -2.5 209,885 + CSW01_01075 0.40 +0.3 209,885 + CSW01_01075 0.40 -1.2 209,885 + CSW01_01075 0.40 -2.2 209,885 + CSW01_01075 0.40 +0.9 209,885 + CSW01_01075 0.40 +0.8 209,885 + CSW01_01075 0.40 -3.3 209,893 - CSW01_01075 0.41 -1.1 209,893 - CSW01_01075 0.41 +2.2 209,893 - CSW01_01075 0.41 +1.4 209,893 - CSW01_01075 0.41 +0.6 209,893 - CSW01_01075 0.41 -1.1 209,893 - CSW01_01075 0.41 +2.2 209,893 - CSW01_01075 0.41 -1.2 209,893 - CSW01_01075 0.41 +1.3 209,934 + CSW01_01075 0.46 -0.6 209,934 + CSW01_01075 0.46 -1.2 209,942 - CSW01_01075 0.46 -1.2 209,942 - CSW01_01075 0.46 +0.1 209,942 - CSW01_01075 0.46 -0.2 209,944 + CSW01_01075 0.47 +0.6 209,964 + CSW01_01075 0.49 -4.5 209,972 - CSW01_01075 0.49 +0.4 210,045 + CSW01_01075 0.57 -0.1 210,053 - CSW01_01075 0.58 -1.4 210,053 - CSW01_01075 0.58 +2.1 210,053 - CSW01_01075 0.58 +1.1 210,053 - CSW01_01075 0.58 +1.0 210,055 + CSW01_01075 0.58 -1.8 210,078 + CSW01_01075 0.61 -0.1 210,078 + CSW01_01075 0.61 +0.8 210,078 + CSW01_01075 0.61 -4.0 210,086 - CSW01_01075 0.61 -1.8 210,086 - CSW01_01075 0.61 -1.3 210,086 - CSW01_01075 0.61 -1.2 210,124 + CSW01_01075 0.65 -3.4 210,132 - CSW01_01075 0.66 +0.8 210,132 - CSW01_01075 0.66 -0.6 210,161 + CSW01_01075 0.69 +0.8 210,161 + CSW01_01075 0.69 -0.3 210,162 + CSW01_01075 0.69 +2.0 210,169 - CSW01_01075 0.70 -2.9 210,169 - CSW01_01075 0.70 -1.7 210,171 + CSW01_01075 0.70 +0.1 210,195 - CSW01_01075 0.73 -2.6 210,218 - CSW01_01075 0.75 +0.4 210,218 - CSW01_01075 0.75 -2.6 210,220 + CSW01_01075 0.75 +0.2 210,248 + CSW01_01075 0.78 -3.2 210,260 + CSW01_01075 0.79 -1.0 210,321 - CSW01_01075 0.86 -0.7 210,342 + CSW01_01075 0.88 +1.2 210,351 + CSW01_01075 0.89 +0.8 210,370 + -2.1 210,370 + -1.6 210,370 + -4.4 210,370 + +0.2 210,378 - -2.9 210,384 - -3.2 210,399 + -0.4 210,455 - -0.2 210,498 - -1.5
Or see this region's nucleotide sequence