Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00940

Experiment: ICP1_phage_2.3_MOI_rep2

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_00935 and CSW01_00940 are separated by 66 nucleotidesCSW01_00940 and CSW01_00945 are separated by 208 nucleotidesCSW01_00945 and CSW01_00950 are separated by 102 nucleotides CSW01_00935: CSW01_00935 - deoxycytidylate deaminase, at 175,344 to 176,942 _00935 CSW01_00940: CSW01_00940 - hypothetical protein, at 177,009 to 177,242 _00940 CSW01_00945: CSW01_00945 - XRE family transcriptional regulator, at 177,451 to 177,759 _00945 CSW01_00950: CSW01_00950 - transcriptional regulator, at 177,862 to 178,425 _00950 Position (kb) 177 178Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 176.009 kb on + strand, within CSW01_00935at 176.009 kb on + strand, within CSW01_00935at 176.016 kb on + strand, within CSW01_00935at 176.024 kb on + strand, within CSW01_00935at 176.024 kb on - strand, within CSW01_00935at 176.024 kb on - strand, within CSW01_00935at 176.024 kb on - strand, within CSW01_00935at 176.041 kb on + strand, within CSW01_00935at 176.041 kb on + strand, within CSW01_00935at 176.041 kb on + strand, within CSW01_00935at 176.042 kb on + strand, within CSW01_00935at 176.049 kb on - strand, within CSW01_00935at 176.049 kb on - strand, within CSW01_00935at 176.050 kb on - strand, within CSW01_00935at 176.074 kb on - strand, within CSW01_00935at 176.074 kb on - strand, within CSW01_00935at 176.092 kb on - strand, within CSW01_00935at 176.096 kb on + strand, within CSW01_00935at 176.096 kb on + strand, within CSW01_00935at 176.096 kb on + strand, within CSW01_00935at 176.101 kb on + strand, within CSW01_00935at 176.101 kb on + strand, within CSW01_00935at 176.101 kb on + strand, within CSW01_00935at 176.101 kb on + strand, within CSW01_00935at 176.101 kb on + strand, within CSW01_00935at 176.101 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.103 kb on + strand, within CSW01_00935at 176.104 kb on - strand, within CSW01_00935at 176.104 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.109 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.111 kb on - strand, within CSW01_00935at 176.116 kb on + strand, within CSW01_00935at 176.116 kb on + strand, within CSW01_00935at 176.147 kb on + strand, within CSW01_00935at 176.154 kb on + strand, within CSW01_00935at 176.161 kb on - strand, within CSW01_00935at 176.161 kb on - strand, within CSW01_00935at 176.161 kb on - strand, within CSW01_00935at 176.170 kb on - strand, within CSW01_00935at 176.187 kb on - strand, within CSW01_00935at 176.190 kb on + strand, within CSW01_00935at 176.192 kb on + strand, within CSW01_00935at 176.198 kb on - strand, within CSW01_00935at 176.200 kb on - strand, within CSW01_00935at 176.200 kb on - strand, within CSW01_00935at 176.208 kb on - strand, within CSW01_00935at 176.208 kb on - strand, within CSW01_00935at 176.224 kb on - strand, within CSW01_00935at 176.251 kb on + strand, within CSW01_00935at 176.251 kb on + strand, within CSW01_00935at 176.251 kb on + strand, within CSW01_00935at 176.259 kb on - strand, within CSW01_00935at 176.259 kb on - strand, within CSW01_00935at 176.305 kb on + strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.313 kb on - strand, within CSW01_00935at 176.319 kb on + strand, within CSW01_00935at 176.353 kb on + strand, within CSW01_00935at 176.354 kb on + strand, within CSW01_00935at 176.372 kb on + strand, within CSW01_00935at 176.372 kb on - strand, within CSW01_00935at 176.375 kb on + strand, within CSW01_00935at 176.382 kb on + strand, within CSW01_00935at 176.382 kb on + strand, within CSW01_00935at 176.382 kb on + strand, within CSW01_00935at 176.385 kb on - strand, within CSW01_00935at 176.385 kb on - strand, within CSW01_00935at 176.385 kb on - strand, within CSW01_00935at 176.385 kb on - strand, within CSW01_00935at 176.385 kb on - strand, within CSW01_00935at 176.390 kb on - strand, within CSW01_00935at 176.390 kb on - strand, within CSW01_00935at 176.404 kb on + strand, within CSW01_00935at 176.410 kb on + strand, within CSW01_00935at 176.447 kb on + strand, within CSW01_00935at 176.454 kb on - strand, within CSW01_00935at 176.455 kb on - strand, within CSW01_00935at 176.500 kb on + strand, within CSW01_00935at 176.547 kb on + strand, within CSW01_00935at 176.562 kb on - strand, within CSW01_00935at 176.601 kb on + strand, within CSW01_00935at 176.609 kb on + strand, within CSW01_00935at 176.612 kb on - strand, within CSW01_00935at 176.646 kb on + strand, within CSW01_00935at 176.654 kb on - strand, within CSW01_00935at 176.661 kb on - strand, within CSW01_00935at 176.663 kb on - strand, within CSW01_00935at 176.663 kb on - strand, within CSW01_00935at 176.690 kb on - strand, within CSW01_00935at 176.711 kb on - strand, within CSW01_00935at 176.778 kb on + strand, within CSW01_00935at 176.778 kb on + strand, within CSW01_00935at 176.786 kb on - strandat 176.786 kb on - strandat 176.792 kb on + strandat 176.797 kb on + strandat 176.797 kb on + strandat 176.800 kb on + strandat 176.805 kb on - strandat 176.805 kb on - strandat 176.814 kb on + strandat 176.814 kb on + strandat 176.814 kb on + strandat 176.816 kb on - strandat 176.824 kb on + strandat 176.830 kb on - strandat 176.832 kb on - strandat 176.832 kb on - strandat 176.840 kb on - strandat 176.902 kb on - strandat 176.923 kb on + strandat 177.010 kb on - strandat 177.123 kb on - strand, within CSW01_00940at 177.152 kb on - strand, within CSW01_00940at 177.265 kb on - strandat 177.274 kb on - strandat 177.490 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.492 kb on + strand, within CSW01_00945at 177.511 kb on + strand, within CSW01_00945at 177.528 kb on - strand, within CSW01_00945at 177.598 kb on + strand, within CSW01_00945at 177.601 kb on + strand, within CSW01_00945at 177.611 kb on + strand, within CSW01_00945at 177.614 kb on - strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.616 kb on + strand, within CSW01_00945at 177.619 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.624 kb on - strand, within CSW01_00945at 177.634 kb on - strand, within CSW01_00945at 177.669 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.671 kb on + strand, within CSW01_00945at 177.679 kb on - strand, within CSW01_00945at 177.690 kb on - strand, within CSW01_00945at 177.861 kb on + strandat 177.867 kb on - strandat 177.874 kb on + strandat 177.879 kb on + strandat 177.882 kb on - strandat 177.884 kb on + strandat 177.884 kb on + strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.892 kb on - strandat 177.894 kb on + strandat 177.961 kb on - strand, within CSW01_00950at 177.978 kb on + strand, within CSW01_00950at 177.996 kb on - strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.044 kb on + strand, within CSW01_00950at 178.051 kb on + strand, within CSW01_00950at 178.052 kb on + strand, within CSW01_00950at 178.088 kb on - strand, within CSW01_00950at 178.155 kb on - strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.158 kb on + strand, within CSW01_00950at 178.163 kb on + strand, within CSW01_00950at 178.166 kb on - strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.168 kb on + strand, within CSW01_00950at 178.174 kb on + strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.176 kb on - strand, within CSW01_00950at 178.199 kb on - strand, within CSW01_00950at 178.201 kb on + strand, within CSW01_00950at 178.209 kb on + strand, within CSW01_00950at 178.211 kb on - strand, within CSW01_00950

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
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176,009 + CSW01_00935 0.42 -4.2
176,009 + CSW01_00935 0.42 +2.4
176,016 + CSW01_00935 0.42 -0.1
176,024 + CSW01_00935 0.43 -4.4
176,024 - CSW01_00935 0.43 -0.5
176,024 - CSW01_00935 0.43 +0.5
176,024 - CSW01_00935 0.43 +0.4
176,041 + CSW01_00935 0.44 +0.6
176,041 + CSW01_00935 0.44 -3.3
176,041 + CSW01_00935 0.44 -2.0
176,042 + CSW01_00935 0.44 +0.8
176,049 - CSW01_00935 0.44 +1.7
176,049 - CSW01_00935 0.44 +0.3
176,050 - CSW01_00935 0.44 +1.8
176,074 - CSW01_00935 0.46 +0.9
176,074 - CSW01_00935 0.46 +1.6
176,092 - CSW01_00935 0.47 -1.0
176,096 + CSW01_00935 0.47 -0.5
176,096 + CSW01_00935 0.47 +0.6
176,096 + CSW01_00935 0.47 -2.9
176,101 + CSW01_00935 0.47 -0.6
176,101 + CSW01_00935 0.47 -1.9
176,101 + CSW01_00935 0.47 +0.2
176,101 + CSW01_00935 0.47 -3.2
176,101 + CSW01_00935 0.47 +0.6
176,101 + CSW01_00935 0.47 -0.7
176,103 + CSW01_00935 0.47 -2.1
176,103 + CSW01_00935 0.47 -0.3
176,103 + CSW01_00935 0.47 +0.7
176,103 + CSW01_00935 0.47 -2.3
176,103 + CSW01_00935 0.47 +1.0
176,103 + CSW01_00935 0.47 +1.2
176,103 + CSW01_00935 0.47 -2.9
176,103 + CSW01_00935 0.47 -3.0
176,103 + CSW01_00935 0.47 -0.1
176,103 + CSW01_00935 0.47 +0.2
176,103 + CSW01_00935 0.47 +0.5
176,103 + CSW01_00935 0.47 +1.0
176,103 + CSW01_00935 0.47 -2.8
176,103 + CSW01_00935 0.47 +0.5
176,103 + CSW01_00935 0.47 -3.6
176,104 - CSW01_00935 0.48 -0.3
176,104 - CSW01_00935 0.48 -2.9
176,109 - CSW01_00935 0.48 -0.0
176,109 - CSW01_00935 0.48 +0.1
176,109 - CSW01_00935 0.48 -0.4
176,109 - CSW01_00935 0.48 +1.0
176,109 - CSW01_00935 0.48 +0.5
176,109 - CSW01_00935 0.48 -0.4
176,109 - CSW01_00935 0.48 -0.4
176,109 - CSW01_00935 0.48 -3.4
176,109 - CSW01_00935 0.48 +0.8
176,111 - CSW01_00935 0.48 +1.0
176,111 - CSW01_00935 0.48 +1.6
176,111 - CSW01_00935 0.48 -0.9
176,111 - CSW01_00935 0.48 +1.1
176,111 - CSW01_00935 0.48 -3.7
176,111 - CSW01_00935 0.48 +0.8
176,111 - CSW01_00935 0.48 -0.4
176,111 - CSW01_00935 0.48 -0.4
176,111 - CSW01_00935 0.48 -1.1
176,111 - CSW01_00935 0.48 -0.8
176,111 - CSW01_00935 0.48 +0.7
176,116 + CSW01_00935 0.48 -4.0
176,116 + CSW01_00935 0.48 +1.3
176,147 + CSW01_00935 0.50 +0.7
176,154 + CSW01_00935 0.51 -1.3
176,161 - CSW01_00935 0.51 +0.5
176,161 - CSW01_00935 0.51 +0.6
176,161 - CSW01_00935 0.51 +1.1
176,170 - CSW01_00935 0.52 +0.7
176,187 - CSW01_00935 0.53 +0.8
176,190 + CSW01_00935 0.53 +1.9
176,192 + CSW01_00935 0.53 -4.8
176,198 - CSW01_00935 0.53 -1.0
176,200 - CSW01_00935 0.54 +0.8
176,200 - CSW01_00935 0.54 -0.2
176,208 - CSW01_00935 0.54 -0.0
176,208 - CSW01_00935 0.54 +1.5
176,224 - CSW01_00935 0.55 +0.7
176,251 + CSW01_00935 0.57 -0.4
176,251 + CSW01_00935 0.57 -1.2
176,251 + CSW01_00935 0.57 -2.3
176,259 - CSW01_00935 0.57 -1.2
176,259 - CSW01_00935 0.57 -2.0
176,305 + CSW01_00935 0.60 -0.0
176,313 - CSW01_00935 0.61 +0.2
176,313 - CSW01_00935 0.61 +0.6
176,313 - CSW01_00935 0.61 -1.6
176,313 - CSW01_00935 0.61 -0.5
176,313 - CSW01_00935 0.61 -3.4
176,313 - CSW01_00935 0.61 +0.9
176,313 - CSW01_00935 0.61 -0.9
176,319 + CSW01_00935 0.61 +0.1
176,353 + CSW01_00935 0.63 -4.0
176,354 + CSW01_00935 0.63 +0.6
176,372 + CSW01_00935 0.64 +0.9
176,372 - CSW01_00935 0.64 +0.6
176,375 + CSW01_00935 0.64 +0.6
176,382 + CSW01_00935 0.65 +1.0
176,382 + CSW01_00935 0.65 -0.3
176,382 + CSW01_00935 0.65 +1.8
176,385 - CSW01_00935 0.65 +0.9
176,385 - CSW01_00935 0.65 -3.6
176,385 - CSW01_00935 0.65 +1.4
176,385 - CSW01_00935 0.65 +0.2
176,385 - CSW01_00935 0.65 -1.1
176,390 - CSW01_00935 0.65 +0.5
176,390 - CSW01_00935 0.65 -2.8
176,404 + CSW01_00935 0.66 +1.1
176,410 + CSW01_00935 0.67 +0.3
176,447 + CSW01_00935 0.69 +0.1
176,454 - CSW01_00935 0.69 +1.2
176,455 - CSW01_00935 0.69 -0.6
176,500 + CSW01_00935 0.72 +0.4
176,547 + CSW01_00935 0.75 +1.7
176,562 - CSW01_00935 0.76 -0.2
176,601 + CSW01_00935 0.79 +1.2
176,609 + CSW01_00935 0.79 +0.6
176,612 - CSW01_00935 0.79 -0.5
176,646 + CSW01_00935 0.81 +0.8
176,654 - CSW01_00935 0.82 -2.0
176,661 - CSW01_00935 0.82 +0.4
176,663 - CSW01_00935 0.82 -1.3
176,663 - CSW01_00935 0.82 -3.8
176,690 - CSW01_00935 0.84 -2.5
176,711 - CSW01_00935 0.85 +0.7
176,778 + CSW01_00935 0.90 -3.5
176,778 + CSW01_00935 0.90 -2.8
176,786 - +0.6
176,786 - +0.1
176,792 + +0.8
176,797 + -0.0
176,797 + -2.5
176,800 + +1.0
176,805 - -0.4
176,805 - +0.9
176,814 + -1.2
176,814 + -2.0
176,814 + +1.4
176,816 - +1.0
176,824 + -0.5
176,830 - +0.0
176,832 - +0.5
176,832 - +0.9
176,840 - -2.7
176,902 - -2.8
176,923 + -5.7
177,010 - +1.6
177,123 - CSW01_00940 0.49 -1.6
177,152 - CSW01_00940 0.61 -4.1
177,265 - -3.4
177,274 - -0.3
177,490 + CSW01_00945 0.13 +0.6
177,492 + CSW01_00945 0.13 +0.7
177,492 + CSW01_00945 0.13 -0.4
177,511 + CSW01_00945 0.19 -0.9
177,528 - CSW01_00945 0.25 +1.8
177,598 + CSW01_00945 0.48 -3.3
177,601 + CSW01_00945 0.49 -0.4
177,611 + CSW01_00945 0.52 +1.1
177,614 - CSW01_00945 0.53 +0.4
177,616 + CSW01_00945 0.53 -4.3
177,616 + CSW01_00945 0.53 -0.2
177,616 + CSW01_00945 0.53 -1.4
177,616 + CSW01_00945 0.53 +1.1
177,619 - CSW01_00945 0.54 +1.0
177,624 - CSW01_00945 0.56 +0.8
177,624 - CSW01_00945 0.56 +1.7
177,624 - CSW01_00945 0.56 +0.2
177,624 - CSW01_00945 0.56 +0.5
177,624 - CSW01_00945 0.56 -1.9
177,624 - CSW01_00945 0.56 +3.1
177,624 - CSW01_00945 0.56 +0.6
177,634 - CSW01_00945 0.59 -3.5
177,669 + CSW01_00945 0.71 +0.2
177,671 + CSW01_00945 0.71 +1.7
177,671 + CSW01_00945 0.71 -1.8
177,679 - CSW01_00945 0.74 +0.9
177,690 - CSW01_00945 0.77 +0.2
177,861 + +0.5
177,867 - -0.2
177,874 + -0.3
177,879 + -0.6
177,882 - -1.9
177,884 + +0.8
177,884 + -3.3
177,892 - +0.9
177,892 - -0.9
177,892 - +0.6
177,892 - -0.3
177,894 + +1.1
177,961 - CSW01_00950 0.18 -0.0
177,978 + CSW01_00950 0.21 +1.6
177,996 - CSW01_00950 0.24 -0.3
178,044 + CSW01_00950 0.32 +0.1
178,044 + CSW01_00950 0.32 +0.4
178,051 + CSW01_00950 0.34 +0.3
178,052 + CSW01_00950 0.34 -3.3
178,088 - CSW01_00950 0.40 +0.6
178,155 - CSW01_00950 0.52 +1.5
178,158 + CSW01_00950 0.52 -1.2
178,158 + CSW01_00950 0.52 +0.9
178,158 + CSW01_00950 0.52 -0.3
178,163 + CSW01_00950 0.53 +1.6
178,166 - CSW01_00950 0.54 -1.5
178,168 + CSW01_00950 0.54 -3.1
178,168 + CSW01_00950 0.54 +1.1
178,168 + CSW01_00950 0.54 -0.5
178,168 + CSW01_00950 0.54 +0.3
178,168 + CSW01_00950 0.54 +1.1
178,168 + CSW01_00950 0.54 +1.4
178,168 + CSW01_00950 0.54 -0.9
178,174 + CSW01_00950 0.55 -0.5
178,176 - CSW01_00950 0.56 +0.8
178,176 - CSW01_00950 0.56 -0.3
178,176 - CSW01_00950 0.56 -3.4
178,176 - CSW01_00950 0.56 -3.7
178,176 - CSW01_00950 0.56 -0.7
178,199 - CSW01_00950 0.60 -2.9
178,201 + CSW01_00950 0.60 -0.0
178,209 + CSW01_00950 0.62 -0.4
178,211 - CSW01_00950 0.62 -3.1

Or see this region's nucleotide sequence