Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00875 and CSW01_00880 are separated by 35 nucleotides CSW01_00880 and CSW01_00885 are separated by 61 nucleotides CSW01_00885 and CSW01_00890 are separated by 70 nucleotides CSW01_00890 and CSW01_00895 are separated by 61 nucleotides CSW01_00895 and CSW01_00900 are separated by 234 nucleotides CSW01_00900 and CSW01_00905 overlap by 9 nucleotides CSW01_00905 and CSW01_00910 are separated by 132 nucleotides
CSW01_00875: CSW01_00875 - tRNA-Arg, at 167,188 to 167,264
_00875
CSW01_00880: CSW01_00880 - tRNA-His, at 167,300 to 167,375
_00880
CSW01_00885: CSW01_00885 - tRNA-Pro, at 167,437 to 167,513
_00885
CSW01_00890: CSW01_00890 - tRNA-His, at 167,584 to 167,659
_00890
CSW01_00895: CSW01_00895 - tRNA-Pro, at 167,721 to 167,797
_00895
CSW01_00900: CSW01_00900 - hypothetical protein, at 168,032 to 168,241
_00900
CSW01_00905: CSW01_00905 - hypothetical protein, at 168,233 to 168,400
_00905
CSW01_00910: CSW01_00910 - ABC transporter ATP-binding protein, at 168,533 to 170,248
_00910
Position (kb) 168
169 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 167.068 kb on - strand at 167.068 kb on - strand at 167.523 kb on + strand at 167.536 kb on - strand at 167.806 kb on - strand at 167.877 kb on + strand at 167.998 kb on + strand at 168.001 kb on - strand at 168.023 kb on - strand at 168.025 kb on - strand at 168.120 kb on - strand, within CSW01_00900 at 168.463 kb on + strand at 168.476 kb on + strand at 168.484 kb on + strand at 168.486 kb on + strand at 168.486 kb on + strand at 168.494 kb on - strand at 168.494 kb on - strand at 168.494 kb on - strand at 168.496 kb on + strand at 168.496 kb on + strand at 168.496 kb on + strand at 168.504 kb on - strand at 168.504 kb on - strand at 168.512 kb on + strand at 168.522 kb on + strand at 168.620 kb on - strand at 168.700 kb on + strand at 168.708 kb on - strand, within CSW01_00910 at 168.708 kb on - strand, within CSW01_00910 at 168.708 kb on - strand, within CSW01_00910 at 168.708 kb on - strand, within CSW01_00910 at 168.708 kb on - strand, within CSW01_00910 at 168.734 kb on - strand, within CSW01_00910 at 168.756 kb on + strand, within CSW01_00910 at 168.824 kb on + strand, within CSW01_00910 at 168.842 kb on - strand, within CSW01_00910 at 168.847 kb on + strand, within CSW01_00910 at 168.847 kb on + strand, within CSW01_00910 at 168.855 kb on - strand, within CSW01_00910 at 168.890 kb on + strand, within CSW01_00910 at 168.911 kb on - strand, within CSW01_00910 at 168.969 kb on + strand, within CSW01_00910 at 168.977 kb on - strand, within CSW01_00910 at 168.981 kb on + strand, within CSW01_00910 at 169.011 kb on + strand, within CSW01_00910 at 169.092 kb on - strand, within CSW01_00910 at 169.163 kb on + strand, within CSW01_00910 at 169.176 kb on - strand, within CSW01_00910 at 169.208 kb on + strand, within CSW01_00910 at 169.210 kb on + strand, within CSW01_00910 at 169.213 kb on - strand, within CSW01_00910 at 169.241 kb on - strand, within CSW01_00910
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 167,068 - +0.1 167,068 - +0.7 167,523 + +1.4 167,536 - -0.5 167,806 - -3.5 167,877 + +1.3 167,998 + +2.8 168,001 - +1.1 168,023 - -2.8 168,025 - -3.9 168,120 - CSW01_00900 0.42 +1.6 168,463 + +0.0 168,476 + +0.9 168,484 + +0.1 168,486 + -2.7 168,486 + -0.4 168,494 - +0.6 168,494 - +1.1 168,494 - -0.3 168,496 + -0.2 168,496 + -0.1 168,496 + -0.4 168,504 - -2.8 168,504 - +0.3 168,512 + -0.0 168,522 + +0.1 168,620 - +0.1 168,700 + +0.1 168,708 - CSW01_00910 0.10 +0.6 168,708 - CSW01_00910 0.10 -4.0 168,708 - CSW01_00910 0.10 -1.4 168,708 - CSW01_00910 0.10 +0.0 168,708 - CSW01_00910 0.10 -4.3 168,734 - CSW01_00910 0.12 +1.2 168,756 + CSW01_00910 0.13 -0.0 168,824 + CSW01_00910 0.17 +0.1 168,842 - CSW01_00910 0.18 -3.2 168,847 + CSW01_00910 0.18 -1.8 168,847 + CSW01_00910 0.18 -2.8 168,855 - CSW01_00910 0.19 +2.1 168,890 + CSW01_00910 0.21 -0.3 168,911 - CSW01_00910 0.22 -2.3 168,969 + CSW01_00910 0.25 -2.0 168,977 - CSW01_00910 0.26 -0.7 168,981 + CSW01_00910 0.26 -0.7 169,011 + CSW01_00910 0.28 +1.0 169,092 - CSW01_00910 0.33 -0.3 169,163 + CSW01_00910 0.37 +0.1 169,176 - CSW01_00910 0.37 +1.0 169,208 + CSW01_00910 0.39 +0.2 169,210 + CSW01_00910 0.39 +0.7 169,213 - CSW01_00910 0.40 -3.8 169,241 - CSW01_00910 0.41 -5.1
Or see this region's nucleotide sequence