Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00695 and CSW01_00700 are separated by 179 nucleotides CSW01_00700 and CSW01_00705 are separated by 169 nucleotides CSW01_00705 and CSW01_00710 are separated by 204 nucleotides CSW01_00710 and CSW01_00715 are separated by 61 nucleotides CSW01_00715 and CSW01_00720 are separated by 227 nucleotides
CSW01_00695: CSW01_00695 - EAL domain-containing protein, at 131,386 to 132,612
_00695
CSW01_00700: CSW01_00700 - DNA starvation/stationary phase protection protein, at 132,792 to 133,262
_00700
CSW01_00705: CSW01_00705 - DUF2500 domain-containing protein, at 133,432 to 133,761
_00705
CSW01_00710: CSW01_00710 - DUF4145 domain-containing protein, at 133,966 to 134,334
_00710
CSW01_00715: CSW01_00715 - hypothetical protein, at 134,396 to 134,527
_00715
CSW01_00720: CSW01_00720 - hydrolase, at 134,755 to 134,871
_00720
Position (kb) 133
134 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 132.444 kb on - strand, within CSW01_00695 at 132.473 kb on + strand, within CSW01_00695 at 132.481 kb on - strand, within CSW01_00695 at 132.481 kb on - strand, within CSW01_00695 at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.509 kb on + strand at 132.514 kb on + strand at 132.514 kb on + strand at 132.514 kb on + strand at 132.517 kb on - strand at 132.517 kb on - strand at 132.517 kb on - strand at 132.517 kb on - strand at 132.522 kb on - strand at 132.522 kb on - strand at 132.522 kb on - strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.524 kb on + strand at 132.527 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.532 kb on - strand at 132.579 kb on + strand at 132.579 kb on + strand at 132.582 kb on - strand at 132.697 kb on + strand at 132.705 kb on - strand at 132.720 kb on + strand at 132.720 kb on + strand at 132.720 kb on + strand at 132.724 kb on - strand at 132.728 kb on - strand at 132.728 kb on - strand at 132.767 kb on - strand at 132.777 kb on + strand at 132.784 kb on + strand at 132.785 kb on - strand at 132.789 kb on + strand at 132.805 kb on + strand at 132.865 kb on - strand, within CSW01_00700 at 132.893 kb on + strand, within CSW01_00700 at 132.893 kb on + strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.901 kb on - strand, within CSW01_00700 at 132.911 kb on - strand, within CSW01_00700 at 132.946 kb on - strand, within CSW01_00700 at 132.963 kb on - strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.000 kb on + strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.008 kb on - strand, within CSW01_00700 at 133.013 kb on + strand, within CSW01_00700 at 133.013 kb on + strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.021 kb on - strand, within CSW01_00700 at 133.090 kb on + strand, within CSW01_00700 at 133.090 kb on + strand, within CSW01_00700 at 133.098 kb on - strand, within CSW01_00700 at 133.215 kb on - strand, within CSW01_00700 at 133.270 kb on - strand at 133.308 kb on + strand at 133.361 kb on + strand at 133.430 kb on + strand at 133.438 kb on + strand at 133.446 kb on - strand at 133.484 kb on + strand, within CSW01_00705 at 133.501 kb on - strand, within CSW01_00705 at 133.510 kb on + strand, within CSW01_00705 at 133.527 kb on + strand, within CSW01_00705 at 133.563 kb on - strand, within CSW01_00705 at 133.594 kb on + strand, within CSW01_00705 at 133.608 kb on + strand, within CSW01_00705 at 133.644 kb on + strand, within CSW01_00705 at 133.644 kb on + strand, within CSW01_00705 at 133.644 kb on + strand, within CSW01_00705 at 133.644 kb on + strand, within CSW01_00705 at 133.644 kb on + strand, within CSW01_00705 at 133.644 kb on + strand, within CSW01_00705 at 133.652 kb on - strand, within CSW01_00705 at 133.652 kb on - strand, within CSW01_00705 at 133.652 kb on - strand, within CSW01_00705 at 133.713 kb on - strand, within CSW01_00705 at 133.739 kb on - strand at 133.739 kb on - strand at 133.756 kb on + strand at 133.764 kb on - strand at 133.764 kb on - strand at 133.774 kb on - strand at 133.776 kb on - strand at 133.776 kb on - strand at 133.781 kb on - strand at 133.905 kb on + strand at 133.923 kb on - strand at 133.948 kb on + strand at 134.005 kb on + strand, within CSW01_00710 at 134.023 kb on + strand, within CSW01_00710 at 134.036 kb on - strand, within CSW01_00710 at 134.036 kb on - strand, within CSW01_00710 at 134.061 kb on - strand, within CSW01_00710 at 134.159 kb on + strand, within CSW01_00710 at 134.184 kb on - strand, within CSW01_00710 at 134.222 kb on + strand, within CSW01_00710 at 134.306 kb on + strand at 134.539 kb on + strand at 134.637 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 132,444 - CSW01_00695 0.86 +1.3 132,473 + CSW01_00695 0.89 -0.2 132,481 - CSW01_00695 0.89 -2.7 132,481 - CSW01_00695 0.89 +0.3 132,509 + -3.1 132,509 + -1.0 132,509 + -0.2 132,509 + -0.3 132,509 + +0.0 132,509 + -1.8 132,509 + +0.3 132,514 + -0.0 132,514 + +0.9 132,514 + +0.9 132,517 - +1.0 132,517 - -4.4 132,517 - +0.9 132,517 - +0.2 132,522 - +2.3 132,522 - -0.6 132,522 - -2.5 132,524 + +0.5 132,524 + +0.3 132,524 + +2.1 132,524 + -3.9 132,524 + +0.5 132,524 + +0.7 132,524 + +0.5 132,524 + +0.8 132,524 + -2.8 132,524 + +0.6 132,524 + -5.3 132,524 + +0.4 132,524 + -1.6 132,527 - +1.4 132,532 - -2.8 132,532 - -1.5 132,532 - -0.7 132,532 - +1.1 132,532 - -3.8 132,532 - +2.7 132,532 - +0.7 132,532 - +0.1 132,532 - -3.6 132,532 - -2.9 132,532 - +0.3 132,532 - +0.1 132,532 - -0.7 132,532 - -4.1 132,532 - -3.1 132,579 + -2.3 132,579 + +0.6 132,582 - +0.9 132,697 + -3.4 132,705 - -1.3 132,720 + -1.2 132,720 + +0.2 132,720 + -1.8 132,724 - +0.9 132,728 - +1.5 132,728 - +0.2 132,767 - +1.4 132,777 + +0.0 132,784 + -0.1 132,785 - +0.7 132,789 + -0.5 132,805 + +0.7 132,865 - CSW01_00700 0.15 -1.0 132,893 + CSW01_00700 0.21 -1.7 132,893 + CSW01_00700 0.21 +0.3 132,901 - CSW01_00700 0.23 +2.6 132,901 - CSW01_00700 0.23 -0.1 132,901 - CSW01_00700 0.23 -0.1 132,901 - CSW01_00700 0.23 +0.4 132,901 - CSW01_00700 0.23 -4.0 132,901 - CSW01_00700 0.23 -3.1 132,911 - CSW01_00700 0.25 -3.5 132,946 - CSW01_00700 0.33 -1.5 132,963 - CSW01_00700 0.36 +0.9 133,000 + CSW01_00700 0.44 +0.2 133,000 + CSW01_00700 0.44 +0.3 133,000 + CSW01_00700 0.44 -4.2 133,000 + CSW01_00700 0.44 -0.4 133,000 + CSW01_00700 0.44 +0.6 133,000 + CSW01_00700 0.44 +0.2 133,008 - CSW01_00700 0.46 -1.1 133,008 - CSW01_00700 0.46 -0.7 133,008 - CSW01_00700 0.46 +1.1 133,008 - CSW01_00700 0.46 -1.9 133,008 - CSW01_00700 0.46 -0.9 133,008 - CSW01_00700 0.46 -0.8 133,008 - CSW01_00700 0.46 -3.1 133,008 - CSW01_00700 0.46 +0.9 133,008 - CSW01_00700 0.46 -0.6 133,008 - CSW01_00700 0.46 -1.1 133,013 + CSW01_00700 0.47 +1.0 133,013 + CSW01_00700 0.47 +1.0 133,021 - CSW01_00700 0.49 +0.6 133,021 - CSW01_00700 0.49 -0.5 133,021 - CSW01_00700 0.49 -3.3 133,021 - CSW01_00700 0.49 +0.2 133,021 - CSW01_00700 0.49 +3.2 133,021 - CSW01_00700 0.49 +1.1 133,021 - CSW01_00700 0.49 -2.1 133,090 + CSW01_00700 0.63 -0.3 133,090 + CSW01_00700 0.63 -1.5 133,098 - CSW01_00700 0.65 -1.3 133,215 - CSW01_00700 0.90 -0.1 133,270 - -2.7 133,308 + -2.3 133,361 + +1.2 133,430 + -1.3 133,438 + +0.8 133,446 - -2.9 133,484 + CSW01_00705 0.16 +1.4 133,501 - CSW01_00705 0.21 -4.0 133,510 + CSW01_00705 0.24 +0.4 133,527 + CSW01_00705 0.29 +0.2 133,563 - CSW01_00705 0.40 +0.3 133,594 + CSW01_00705 0.49 +1.2 133,608 + CSW01_00705 0.53 +1.9 133,644 + CSW01_00705 0.64 +1.1 133,644 + CSW01_00705 0.64 -0.2 133,644 + CSW01_00705 0.64 +0.4 133,644 + CSW01_00705 0.64 +0.9 133,644 + CSW01_00705 0.64 -0.5 133,644 + CSW01_00705 0.64 +0.7 133,652 - CSW01_00705 0.67 -2.1 133,652 - CSW01_00705 0.67 +0.9 133,652 - CSW01_00705 0.67 -0.4 133,713 - CSW01_00705 0.85 +0.1 133,739 - +0.2 133,739 - -0.2 133,756 + -4.8 133,764 - +0.7 133,764 - +0.4 133,774 - +0.3 133,776 - +1.2 133,776 - -0.9 133,781 - +0.9 133,905 + +2.3 133,923 - -1.5 133,948 + -1.8 134,005 + CSW01_00710 0.11 -0.1 134,023 + CSW01_00710 0.15 -3.2 134,036 - CSW01_00710 0.19 +1.0 134,036 - CSW01_00710 0.19 -2.9 134,061 - CSW01_00710 0.26 -0.6 134,159 + CSW01_00710 0.52 +1.6 134,184 - CSW01_00710 0.59 -1.0 134,222 + CSW01_00710 0.69 -0.5 134,306 + -0.7 134,539 + -0.4 134,637 - -0.8
Or see this region's nucleotide sequence