Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00525 and CSW01_00530 are separated by 374 nucleotides CSW01_00530 and CSW01_00535 are separated by 6 nucleotides CSW01_00535 and CSW01_00540 are separated by 80 nucleotides
CSW01_00525: CSW01_00525 - methyl-accepting chemotaxis protein, at 95,593 to 97,572
_00525
CSW01_00530: CSW01_00530 - rhomboid family intramembrane serine protease GlpG, at 97,947 to 98,780
_00530
CSW01_00535: CSW01_00535 - thiosulfate sulfurtransferase, at 98,787 to 99,107
_00535
CSW01_00540: CSW01_00540 - hypothetical protein, at 99,188 to 99,403
_00540
Position (kb) 97
98
99 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 96.959 kb on + strand, within CSW01_00525 at 96.959 kb on + strand, within CSW01_00525 at 97.009 kb on + strand, within CSW01_00525 at 97.017 kb on - strand, within CSW01_00525 at 97.047 kb on + strand, within CSW01_00525 at 97.057 kb on - strand, within CSW01_00525 at 97.113 kb on + strand, within CSW01_00525 at 97.113 kb on + strand, within CSW01_00525 at 97.155 kb on - strand, within CSW01_00525 at 97.174 kb on - strand, within CSW01_00525 at 97.211 kb on + strand, within CSW01_00525 at 97.211 kb on - strand, within CSW01_00525 at 97.214 kb on - strand, within CSW01_00525 at 97.214 kb on - strand, within CSW01_00525 at 97.216 kb on + strand, within CSW01_00525 at 97.226 kb on - strand, within CSW01_00525 at 97.274 kb on + strand, within CSW01_00525 at 97.285 kb on - strand, within CSW01_00525 at 97.296 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.331 kb on + strand, within CSW01_00525 at 97.339 kb on - strand, within CSW01_00525 at 97.339 kb on - strand, within CSW01_00525 at 97.339 kb on - strand, within CSW01_00525 at 97.388 kb on + strand at 97.388 kb on + strand at 97.436 kb on + strand at 97.500 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.505 kb on + strand at 97.508 kb on - strand at 97.508 kb on - strand at 97.508 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.513 kb on - strand at 97.547 kb on - strand at 97.567 kb on + strand at 97.568 kb on + strand at 97.576 kb on - strand at 97.591 kb on - strand at 97.591 kb on - strand at 97.591 kb on - strand at 97.591 kb on - strand at 97.591 kb on - strand at 97.591 kb on - strand at 97.595 kb on - strand at 97.670 kb on + strand at 97.670 kb on + strand at 97.694 kb on + strand at 97.767 kb on + strand at 97.767 kb on + strand at 97.775 kb on - strand at 97.788 kb on + strand at 97.788 kb on + strand at 97.793 kb on + strand at 97.793 kb on + strand at 97.793 kb on + strand at 97.796 kb on - strand at 97.808 kb on + strand at 97.808 kb on + strand at 97.808 kb on + strand at 97.808 kb on + strand at 97.816 kb on - strand at 97.816 kb on - strand at 97.816 kb on - strand at 97.816 kb on - strand at 97.821 kb on + strand at 97.858 kb on + strand at 97.861 kb on - strand at 97.866 kb on - strand at 97.911 kb on + strand at 97.977 kb on - strand at 97.993 kb on - strand at 98.006 kb on - strand at 98.015 kb on - strand at 98.048 kb on - strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.052 kb on + strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.060 kb on - strand, within CSW01_00530 at 98.070 kb on - strand, within CSW01_00530 at 98.070 kb on - strand, within CSW01_00530 at 98.072 kb on + strand, within CSW01_00530 at 98.080 kb on - strand, within CSW01_00530 at 98.080 kb on - strand, within CSW01_00530 at 98.108 kb on - strand, within CSW01_00530 at 98.109 kb on - strand, within CSW01_00530 at 98.111 kb on + strand, within CSW01_00530 at 98.119 kb on - strand, within CSW01_00530 at 98.154 kb on + strand, within CSW01_00530 at 98.163 kb on - strand, within CSW01_00530 at 98.169 kb on + strand, within CSW01_00530 at 98.192 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.202 kb on + strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.210 kb on - strand, within CSW01_00530 at 98.212 kb on + strand, within CSW01_00530 at 98.220 kb on - strand, within CSW01_00530 at 98.252 kb on + strand, within CSW01_00530 at 98.252 kb on + strand, within CSW01_00530 at 98.252 kb on + strand, within CSW01_00530 at 98.260 kb on - strand, within CSW01_00530 at 98.260 kb on - strand, within CSW01_00530 at 98.269 kb on - strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.273 kb on + strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.281 kb on - strand, within CSW01_00530 at 98.302 kb on - strand, within CSW01_00530 at 98.318 kb on - strand, within CSW01_00530 at 98.351 kb on + strand, within CSW01_00530 at 98.359 kb on - strand, within CSW01_00530 at 98.359 kb on - strand, within CSW01_00530 at 98.359 kb on - strand, within CSW01_00530 at 98.407 kb on + strand, within CSW01_00530 at 98.407 kb on - strand, within CSW01_00530 at 98.415 kb on - strand, within CSW01_00530 at 98.437 kb on - strand, within CSW01_00530 at 98.437 kb on - strand, within CSW01_00530 at 98.444 kb on + strand, within CSW01_00530 at 98.444 kb on - strand, within CSW01_00530 at 98.452 kb on - strand, within CSW01_00530 at 98.470 kb on + strand, within CSW01_00530 at 98.478 kb on - strand, within CSW01_00530 at 98.495 kb on - strand, within CSW01_00530 at 98.519 kb on + strand, within CSW01_00530 at 98.558 kb on - strand, within CSW01_00530 at 98.593 kb on + strand, within CSW01_00530 at 98.601 kb on - strand, within CSW01_00530 at 98.648 kb on - strand, within CSW01_00530 at 98.651 kb on - strand, within CSW01_00530 at 98.651 kb on - strand, within CSW01_00530 at 98.668 kb on - strand, within CSW01_00530 at 98.678 kb on - strand, within CSW01_00530 at 98.736 kb on + strand at 98.737 kb on + strand at 98.817 kb on + strand at 98.825 kb on + strand, within CSW01_00535 at 98.825 kb on - strand, within CSW01_00535 at 98.842 kb on + strand, within CSW01_00535 at 98.842 kb on + strand, within CSW01_00535 at 98.845 kb on + strand, within CSW01_00535 at 98.845 kb on + strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.853 kb on - strand, within CSW01_00535 at 98.877 kb on + strand, within CSW01_00535 at 98.877 kb on + strand, within CSW01_00535 at 98.885 kb on - strand, within CSW01_00535 at 98.971 kb on - strand, within CSW01_00535 at 98.971 kb on - strand, within CSW01_00535 at 98.975 kb on - strand, within CSW01_00535 at 99.117 kb on - strand at 99.153 kb on + strand at 99.169 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.180 kb on + strand at 99.221 kb on + strand, within CSW01_00540 at 99.224 kb on - strand, within CSW01_00540 at 99.345 kb on + strand, within CSW01_00540 at 99.512 kb on + strand at 99.581 kb on - strand at 99.585 kb on + strand at 99.585 kb on + strand at 99.672 kb on + strand at 99.680 kb on - strand at 99.680 kb on - strand at 99.683 kb on + strand at 99.698 kb on + strand at 99.698 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 96,959 + CSW01_00525 0.69 +0.5 96,959 + CSW01_00525 0.69 -0.7 97,009 + CSW01_00525 0.72 +0.4 97,017 - CSW01_00525 0.72 +1.5 97,047 + CSW01_00525 0.73 +0.9 97,057 - CSW01_00525 0.74 -1.5 97,113 + CSW01_00525 0.77 -0.8 97,113 + CSW01_00525 0.77 -2.1 97,155 - CSW01_00525 0.79 -2.4 97,174 - CSW01_00525 0.80 -2.3 97,211 + CSW01_00525 0.82 +0.6 97,211 - CSW01_00525 0.82 -0.2 97,214 - CSW01_00525 0.82 +0.7 97,214 - CSW01_00525 0.82 +1.6 97,216 + CSW01_00525 0.82 -1.2 97,226 - CSW01_00525 0.82 -3.8 97,274 + CSW01_00525 0.85 +0.3 97,285 - CSW01_00525 0.85 -2.8 97,296 + CSW01_00525 0.86 -3.3 97,331 + CSW01_00525 0.88 -4.2 97,331 + CSW01_00525 0.88 -4.1 97,331 + CSW01_00525 0.88 +1.1 97,331 + CSW01_00525 0.88 +0.2 97,331 + CSW01_00525 0.88 -0.6 97,331 + CSW01_00525 0.88 +0.9 97,331 + CSW01_00525 0.88 -4.2 97,339 - CSW01_00525 0.88 -2.4 97,339 - CSW01_00525 0.88 -1.7 97,339 - CSW01_00525 0.88 -2.1 97,388 + -1.3 97,388 + +2.0 97,436 + +1.0 97,500 + -1.2 97,505 + -0.1 97,505 + +1.9 97,505 + -1.8 97,505 + -1.2 97,505 + -1.4 97,505 + +0.2 97,505 + -0.2 97,505 + +0.2 97,508 - -4.2 97,508 - +0.5 97,508 - -2.1 97,513 - +1.0 97,513 - +0.6 97,513 - -1.3 97,513 - +1.1 97,513 - +1.0 97,513 - +0.2 97,513 - +0.9 97,513 - -2.6 97,547 - -4.1 97,567 + -0.1 97,568 + +0.9 97,576 - -0.4 97,591 - +1.4 97,591 - -1.3 97,591 - +1.5 97,591 - +0.2 97,591 - -0.2 97,591 - +2.4 97,595 - -1.6 97,670 + +0.8 97,670 + -3.0 97,694 + -1.4 97,767 + +0.5 97,767 + +1.1 97,775 - -2.0 97,788 + +1.0 97,788 + -3.5 97,793 + +0.5 97,793 + -4.0 97,793 + -0.2 97,796 - -0.1 97,808 + -1.0 97,808 + +0.5 97,808 + +0.0 97,808 + -1.0 97,816 - +1.5 97,816 - +1.9 97,816 - +0.8 97,816 - +0.7 97,821 + -3.5 97,858 + +1.1 97,861 - -2.6 97,866 - +0.9 97,911 + -0.5 97,977 - -0.1 97,993 - -3.2 98,006 - -1.1 98,015 - -1.2 98,048 - CSW01_00530 0.12 +1.5 98,052 + CSW01_00530 0.13 +0.4 98,052 + CSW01_00530 0.13 +1.1 98,052 + CSW01_00530 0.13 -1.0 98,052 + CSW01_00530 0.13 +0.3 98,052 + CSW01_00530 0.13 +0.5 98,052 + CSW01_00530 0.13 +0.4 98,052 + CSW01_00530 0.13 -1.3 98,052 + CSW01_00530 0.13 -0.0 98,052 + CSW01_00530 0.13 -3.1 98,060 - CSW01_00530 0.14 +0.9 98,060 - CSW01_00530 0.14 -0.6 98,060 - CSW01_00530 0.14 +0.6 98,060 - CSW01_00530 0.14 -0.3 98,060 - CSW01_00530 0.14 +1.4 98,060 - CSW01_00530 0.14 -3.4 98,060 - CSW01_00530 0.14 -1.7 98,060 - CSW01_00530 0.14 +1.0 98,060 - CSW01_00530 0.14 -2.4 98,060 - CSW01_00530 0.14 +0.6 98,060 - CSW01_00530 0.14 +0.4 98,070 - CSW01_00530 0.15 -3.1 98,070 - CSW01_00530 0.15 +0.3 98,072 + CSW01_00530 0.15 -2.0 98,080 - CSW01_00530 0.16 +0.0 98,080 - CSW01_00530 0.16 +0.6 98,108 - CSW01_00530 0.19 +1.1 98,109 - CSW01_00530 0.19 +0.7 98,111 + CSW01_00530 0.20 +1.1 98,119 - CSW01_00530 0.21 -0.2 98,154 + CSW01_00530 0.25 -3.5 98,163 - CSW01_00530 0.26 +1.0 98,169 + CSW01_00530 0.27 +1.0 98,192 + CSW01_00530 0.29 +0.1 98,202 + CSW01_00530 0.31 +1.7 98,202 + CSW01_00530 0.31 -0.8 98,202 + CSW01_00530 0.31 -2.0 98,202 + CSW01_00530 0.31 -0.3 98,210 - CSW01_00530 0.32 +1.4 98,210 - CSW01_00530 0.32 -0.7 98,210 - CSW01_00530 0.32 +0.4 98,210 - CSW01_00530 0.32 +0.8 98,210 - CSW01_00530 0.32 -0.3 98,210 - CSW01_00530 0.32 +0.7 98,212 + CSW01_00530 0.32 -1.0 98,220 - CSW01_00530 0.33 +1.2 98,252 + CSW01_00530 0.37 -0.4 98,252 + CSW01_00530 0.37 -1.6 98,252 + CSW01_00530 0.37 -3.3 98,260 - CSW01_00530 0.38 +0.9 98,260 - CSW01_00530 0.38 +0.8 98,269 - CSW01_00530 0.39 +0.8 98,273 + CSW01_00530 0.39 -3.3 98,273 + CSW01_00530 0.39 -4.2 98,273 + CSW01_00530 0.39 +0.3 98,273 + CSW01_00530 0.39 +0.5 98,273 + CSW01_00530 0.39 -0.7 98,281 - CSW01_00530 0.40 +0.4 98,281 - CSW01_00530 0.40 +0.1 98,281 - CSW01_00530 0.40 +0.6 98,281 - CSW01_00530 0.40 -0.9 98,281 - CSW01_00530 0.40 -2.7 98,281 - CSW01_00530 0.40 +0.6 98,281 - CSW01_00530 0.40 +0.5 98,281 - CSW01_00530 0.40 +0.5 98,281 - CSW01_00530 0.40 +0.2 98,281 - CSW01_00530 0.40 -0.7 98,281 - CSW01_00530 0.40 +0.4 98,281 - CSW01_00530 0.40 -0.4 98,302 - CSW01_00530 0.43 -0.6 98,318 - CSW01_00530 0.44 -1.2 98,351 + CSW01_00530 0.48 +0.2 98,359 - CSW01_00530 0.49 +0.3 98,359 - CSW01_00530 0.49 +0.4 98,359 - CSW01_00530 0.49 +0.7 98,407 + CSW01_00530 0.55 +0.1 98,407 - CSW01_00530 0.55 +1.0 98,415 - CSW01_00530 0.56 -1.3 98,437 - CSW01_00530 0.59 -1.4 98,437 - CSW01_00530 0.59 +0.6 98,444 + CSW01_00530 0.60 +1.6 98,444 - CSW01_00530 0.60 -0.1 98,452 - CSW01_00530 0.61 +0.5 98,470 + CSW01_00530 0.63 -0.8 98,478 - CSW01_00530 0.64 +0.6 98,495 - CSW01_00530 0.66 +0.9 98,519 + CSW01_00530 0.69 +0.9 98,558 - CSW01_00530 0.73 -0.8 98,593 + CSW01_00530 0.77 +0.7 98,601 - CSW01_00530 0.78 +0.3 98,648 - CSW01_00530 0.84 +1.9 98,651 - CSW01_00530 0.84 -0.4 98,651 - CSW01_00530 0.84 -4.2 98,668 - CSW01_00530 0.86 +0.8 98,678 - CSW01_00530 0.88 -0.8 98,736 + -0.9 98,737 + -5.1 98,817 + +0.6 98,825 + CSW01_00535 0.12 -1.4 98,825 - CSW01_00535 0.12 +0.5 98,842 + CSW01_00535 0.17 -0.0 98,842 + CSW01_00535 0.17 +0.4 98,845 + CSW01_00535 0.18 +0.1 98,845 + CSW01_00535 0.18 -2.9 98,853 - CSW01_00535 0.21 -4.5 98,853 - CSW01_00535 0.21 -1.4 98,853 - CSW01_00535 0.21 +0.1 98,853 - CSW01_00535 0.21 +0.8 98,853 - CSW01_00535 0.21 +0.5 98,877 + CSW01_00535 0.28 -0.2 98,877 + CSW01_00535 0.28 +0.0 98,885 - CSW01_00535 0.31 -1.2 98,971 - CSW01_00535 0.57 +0.9 98,971 - CSW01_00535 0.57 +0.5 98,975 - CSW01_00535 0.59 +0.6 99,117 - -2.5 99,153 + -4.4 99,169 + +1.1 99,180 + +0.3 99,180 + -3.4 99,180 + -2.3 99,180 + +1.5 99,180 + -2.9 99,221 + CSW01_00540 0.15 -3.5 99,224 - CSW01_00540 0.17 -2.7 99,345 + CSW01_00540 0.73 -3.9 99,512 + -1.0 99,581 - -2.8 99,585 + -0.1 99,585 + +1.8 99,672 + +1.6 99,680 - +1.1 99,680 - +0.3 99,683 + +0.1 99,698 + +0.3 99,698 + +1.7
Or see this region's nucleotide sequence