Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_00395

Experiment: ICP1_phage_2.3_MOI_rep2

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_00390 and CSW01_00395 are separated by 59 nucleotidesCSW01_00395 and CSW01_00400 are separated by 117 nucleotidesCSW01_00400 and CSW01_00405 are separated by 95 nucleotides CSW01_00390: CSW01_00390 - GGDEF domain-containing protein, at 71,513 to 73,819 _00390 CSW01_00395: CSW01_00395 - ribosomal RNA small subunit methyltransferase J, at 73,879 to 74,664 _00395 CSW01_00400: CSW01_00400 - hypothetical protein, at 74,782 to 75,171 _00400 CSW01_00405: CSW01_00405 - EamA family transporter, at 75,267 to 76,154 _00405 Position (kb) 73 74 75Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 72.881 kb on + strand, within CSW01_00390at 72.881 kb on + strand, within CSW01_00390at 72.889 kb on - strand, within CSW01_00390at 72.889 kb on - strand, within CSW01_00390at 72.889 kb on - strand, within CSW01_00390at 72.909 kb on + strand, within CSW01_00390at 72.997 kb on + strand, within CSW01_00390at 72.997 kb on + strand, within CSW01_00390at 73.064 kb on + strand, within CSW01_00390at 73.121 kb on - strand, within CSW01_00390at 73.157 kb on + strand, within CSW01_00390at 73.157 kb on + strand, within CSW01_00390at 73.192 kb on - strand, within CSW01_00390at 73.218 kb on + strand, within CSW01_00390at 73.226 kb on - strand, within CSW01_00390at 73.272 kb on + strand, within CSW01_00390at 73.272 kb on + strand, within CSW01_00390at 73.272 kb on + strand, within CSW01_00390at 73.273 kb on - strand, within CSW01_00390at 73.280 kb on - strand, within CSW01_00390at 73.280 kb on - strand, within CSW01_00390at 73.281 kb on + strand, within CSW01_00390at 73.289 kb on - strand, within CSW01_00390at 73.301 kb on + strand, within CSW01_00390at 73.378 kb on + strand, within CSW01_00390at 73.433 kb on + strand, within CSW01_00390at 73.450 kb on + strand, within CSW01_00390at 73.475 kb on + strand, within CSW01_00390at 73.501 kb on - strand, within CSW01_00390at 73.501 kb on - strand, within CSW01_00390at 73.527 kb on + strand, within CSW01_00390at 73.636 kb on + strandat 73.644 kb on - strandat 73.670 kb on + strandat 73.670 kb on + strandat 73.678 kb on - strandat 73.719 kb on - strandat 73.741 kb on - strandat 73.746 kb on - strandat 73.750 kb on + strandat 73.758 kb on - strandat 73.762 kb on - strandat 73.775 kb on - strandat 73.814 kb on + strandat 73.814 kb on + strandat 73.821 kb on - strandat 73.822 kb on - strandat 73.822 kb on - strandat 73.822 kb on - strandat 73.822 kb on - strandat 73.905 kb on + strandat 73.913 kb on - strandat 73.913 kb on - strandat 73.951 kb on + strandat 73.951 kb on + strandat 73.959 kb on - strand, within CSW01_00395at 73.978 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.000 kb on + strand, within CSW01_00395at 74.008 kb on - strand, within CSW01_00395at 74.008 kb on - strand, within CSW01_00395at 74.008 kb on - strand, within CSW01_00395at 74.024 kb on + strand, within CSW01_00395at 74.063 kb on + strand, within CSW01_00395at 74.063 kb on - strand, within CSW01_00395at 74.068 kb on + strand, within CSW01_00395at 74.074 kb on - strand, within CSW01_00395at 74.076 kb on - strand, within CSW01_00395at 74.095 kb on + strand, within CSW01_00395at 74.103 kb on - strand, within CSW01_00395at 74.130 kb on + strand, within CSW01_00395at 74.133 kb on - strand, within CSW01_00395at 74.133 kb on - strand, within CSW01_00395at 74.137 kb on + strand, within CSW01_00395at 74.138 kb on - strand, within CSW01_00395at 74.151 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.170 kb on + strand, within CSW01_00395at 74.178 kb on - strand, within CSW01_00395at 74.178 kb on - strand, within CSW01_00395at 74.178 kb on - strand, within CSW01_00395at 74.183 kb on + strand, within CSW01_00395at 74.200 kb on + strand, within CSW01_00395at 74.200 kb on + strand, within CSW01_00395at 74.218 kb on - strand, within CSW01_00395at 74.218 kb on - strand, within CSW01_00395at 74.227 kb on - strand, within CSW01_00395at 74.250 kb on - strand, within CSW01_00395at 74.250 kb on - strand, within CSW01_00395at 74.263 kb on + strand, within CSW01_00395at 74.297 kb on + strand, within CSW01_00395at 74.299 kb on + strand, within CSW01_00395at 74.324 kb on - strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.333 kb on + strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.341 kb on - strand, within CSW01_00395at 74.350 kb on - strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.394 kb on + strand, within CSW01_00395at 74.402 kb on - strand, within CSW01_00395at 74.402 kb on - strand, within CSW01_00395at 74.407 kb on - strand, within CSW01_00395at 74.411 kb on + strand, within CSW01_00395at 74.481 kb on + strand, within CSW01_00395at 74.488 kb on + strand, within CSW01_00395at 74.499 kb on + strand, within CSW01_00395at 74.501 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.511 kb on + strand, within CSW01_00395at 74.519 kb on - strand, within CSW01_00395at 74.519 kb on - strand, within CSW01_00395at 74.549 kb on + strand, within CSW01_00395at 74.684 kb on + strandat 74.692 kb on + strandat 74.790 kb on + strandat 74.791 kb on + strandat 74.848 kb on - strand, within CSW01_00400at 74.939 kb on + strand, within CSW01_00400at 74.980 kb on + strand, within CSW01_00400at 75.130 kb on + strand, within CSW01_00400at 75.144 kb on + strandat 75.144 kb on - strandat 75.144 kb on - strandat 75.154 kb on + strandat 75.154 kb on + strandat 75.193 kb on - strandat 75.199 kb on - strandat 75.270 kb on + strandat 75.278 kb on - strandat 75.295 kb on - strandat 75.417 kb on + strand, within CSW01_00405at 75.447 kb on + strand, within CSW01_00405at 75.465 kb on + strand, within CSW01_00405at 75.478 kb on + strand, within CSW01_00405at 75.486 kb on - strand, within CSW01_00405at 75.501 kb on - strand, within CSW01_00405at 75.511 kb on - strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.518 kb on + strand, within CSW01_00405at 75.521 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.526 kb on - strand, within CSW01_00405at 75.540 kb on + strand, within CSW01_00405at 75.545 kb on + strand, within CSW01_00405at 75.593 kb on - strand, within CSW01_00405at 75.650 kb on - strand, within CSW01_00405at 75.650 kb on - strand, within CSW01_00405at 75.661 kb on - strand, within CSW01_00405

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2
remove
72,881 + CSW01_00390 0.59 -2.3
72,881 + CSW01_00390 0.59 +0.6
72,889 - CSW01_00390 0.60 -3.3
72,889 - CSW01_00390 0.60 +0.6
72,889 - CSW01_00390 0.60 +0.7
72,909 + CSW01_00390 0.61 +0.1
72,997 + CSW01_00390 0.64 -0.7
72,997 + CSW01_00390 0.64 -0.6
73,064 + CSW01_00390 0.67 +0.5
73,121 - CSW01_00390 0.70 +1.5
73,157 + CSW01_00390 0.71 +1.6
73,157 + CSW01_00390 0.71 +1.0
73,192 - CSW01_00390 0.73 +1.2
73,218 + CSW01_00390 0.74 -0.7
73,226 - CSW01_00390 0.74 +1.1
73,272 + CSW01_00390 0.76 +0.6
73,272 + CSW01_00390 0.76 -3.4
73,272 + CSW01_00390 0.76 +2.0
73,273 - CSW01_00390 0.76 +1.3
73,280 - CSW01_00390 0.77 -0.7
73,280 - CSW01_00390 0.77 -0.8
73,281 + CSW01_00390 0.77 -3.8
73,289 - CSW01_00390 0.77 +0.6
73,301 + CSW01_00390 0.78 +0.3
73,378 + CSW01_00390 0.81 -1.5
73,433 + CSW01_00390 0.83 +1.8
73,450 + CSW01_00390 0.84 -1.1
73,475 + CSW01_00390 0.85 -1.3
73,501 - CSW01_00390 0.86 -2.1
73,501 - CSW01_00390 0.86 +0.8
73,527 + CSW01_00390 0.87 -3.3
73,636 + -2.8
73,644 - -3.2
73,670 + +0.8
73,670 + -0.6
73,678 - -0.7
73,719 - -0.1
73,741 - -0.1
73,746 - +1.2
73,750 + -3.9
73,758 - +1.2
73,762 - -0.4
73,775 - +0.8
73,814 + +0.9
73,814 + +0.8
73,821 - -0.2
73,822 - -0.6
73,822 - -1.8
73,822 - -2.1
73,822 - +1.1
73,905 + +0.4
73,913 - +0.6
73,913 - +0.4
73,951 + -1.8
73,951 + -1.1
73,959 - CSW01_00395 0.10 -0.4
73,978 + CSW01_00395 0.13 -0.6
74,000 + CSW01_00395 0.15 -0.3
74,000 + CSW01_00395 0.15 +0.9
74,000 + CSW01_00395 0.15 +1.2
74,000 + CSW01_00395 0.15 -1.4
74,008 - CSW01_00395 0.16 -0.8
74,008 - CSW01_00395 0.16 +1.5
74,008 - CSW01_00395 0.16 +0.9
74,024 + CSW01_00395 0.18 -0.6
74,063 + CSW01_00395 0.23 +0.7
74,063 - CSW01_00395 0.23 -4.0
74,068 + CSW01_00395 0.24 -0.1
74,074 - CSW01_00395 0.25 -0.7
74,076 - CSW01_00395 0.25 +1.2
74,095 + CSW01_00395 0.27 -2.9
74,103 - CSW01_00395 0.28 -0.1
74,130 + CSW01_00395 0.32 -0.4
74,133 - CSW01_00395 0.32 -3.3
74,133 - CSW01_00395 0.32 -1.4
74,137 + CSW01_00395 0.33 -1.0
74,138 - CSW01_00395 0.33 -1.0
74,151 + CSW01_00395 0.35 -3.7
74,170 + CSW01_00395 0.37 +0.7
74,170 + CSW01_00395 0.37 -0.7
74,170 + CSW01_00395 0.37 -0.5
74,170 + CSW01_00395 0.37 -1.1
74,170 + CSW01_00395 0.37 +0.4
74,170 + CSW01_00395 0.37 -3.5
74,178 - CSW01_00395 0.38 +1.1
74,178 - CSW01_00395 0.38 -2.0
74,178 - CSW01_00395 0.38 -0.4
74,183 + CSW01_00395 0.39 +1.0
74,200 + CSW01_00395 0.41 -2.1
74,200 + CSW01_00395 0.41 -2.7
74,218 - CSW01_00395 0.43 -2.4
74,218 - CSW01_00395 0.43 -2.1
74,227 - CSW01_00395 0.44 +0.4
74,250 - CSW01_00395 0.47 -4.1
74,250 - CSW01_00395 0.47 -2.1
74,263 + CSW01_00395 0.49 +0.4
74,297 + CSW01_00395 0.53 +0.5
74,299 + CSW01_00395 0.53 -3.4
74,324 - CSW01_00395 0.57 +1.8
74,333 + CSW01_00395 0.58 -1.3
74,333 + CSW01_00395 0.58 -0.4
74,333 + CSW01_00395 0.58 -1.7
74,333 + CSW01_00395 0.58 +1.6
74,333 + CSW01_00395 0.58 -0.4
74,333 + CSW01_00395 0.58 +0.5
74,341 - CSW01_00395 0.59 +0.1
74,341 - CSW01_00395 0.59 -3.8
74,341 - CSW01_00395 0.59 +0.6
74,350 - CSW01_00395 0.60 +1.2
74,394 + CSW01_00395 0.66 +1.1
74,394 + CSW01_00395 0.66 +0.7
74,394 + CSW01_00395 0.66 +0.1
74,402 - CSW01_00395 0.67 -0.4
74,402 - CSW01_00395 0.67 -2.6
74,407 - CSW01_00395 0.67 +0.8
74,411 + CSW01_00395 0.68 -1.1
74,481 + CSW01_00395 0.77 +0.9
74,488 + CSW01_00395 0.77 -1.9
74,499 + CSW01_00395 0.79 -2.0
74,501 + CSW01_00395 0.79 -2.4
74,511 + CSW01_00395 0.80 -2.7
74,511 + CSW01_00395 0.80 +0.8
74,511 + CSW01_00395 0.80 +0.5
74,511 + CSW01_00395 0.80 -2.0
74,519 - CSW01_00395 0.81 +0.6
74,519 - CSW01_00395 0.81 -0.2
74,549 + CSW01_00395 0.85 +0.2
74,684 + -2.9
74,692 + -0.4
74,790 + -3.8
74,791 + -1.4
74,848 - CSW01_00400 0.17 -0.1
74,939 + CSW01_00400 0.40 -1.0
74,980 + CSW01_00400 0.51 +0.5
75,130 + CSW01_00400 0.89 +0.0
75,144 + -1.8
75,144 - -1.8
75,144 - -3.0
75,154 + +1.0
75,154 + -0.7
75,193 - +0.3
75,199 - +0.9
75,270 + +0.6
75,278 - +0.0
75,295 - -0.3
75,417 + CSW01_00405 0.17 -3.1
75,447 + CSW01_00405 0.20 +2.1
75,465 + CSW01_00405 0.22 -4.4
75,478 + CSW01_00405 0.24 +0.1
75,486 - CSW01_00405 0.25 -0.1
75,501 - CSW01_00405 0.26 -0.1
75,511 - CSW01_00405 0.27 +1.1
75,518 + CSW01_00405 0.28 -2.4
75,518 + CSW01_00405 0.28 +2.9
75,518 + CSW01_00405 0.28 -4.3
75,521 - CSW01_00405 0.29 -3.1
75,526 - CSW01_00405 0.29 -0.2
75,526 - CSW01_00405 0.29 -3.6
75,526 - CSW01_00405 0.29 -1.3
75,526 - CSW01_00405 0.29 -1.8
75,526 - CSW01_00405 0.29 +0.2
75,526 - CSW01_00405 0.29 -0.2
75,540 + CSW01_00405 0.31 +1.1
75,545 + CSW01_00405 0.31 +0.2
75,593 - CSW01_00405 0.37 +0.7
75,650 - CSW01_00405 0.43 -0.2
75,650 - CSW01_00405 0.43 -0.8
75,661 - CSW01_00405 0.44 -0.2

Or see this region's nucleotide sequence