Experiment: ICP1_phage_2.3_MOI_rep2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_00075 and CSW01_00080 are separated by 9 nucleotides CSW01_00080 and CSW01_00085 are separated by 275 nucleotides CSW01_00085 and CSW01_00090 are separated by 87 nucleotides
CSW01_00075: CSW01_00075 - transcription elongation factor GreAB, at 13,876 to 14,367
_00075
CSW01_00080: CSW01_00080 - hypothetical protein, at 14,377 to 14,493
_00080
CSW01_00085: CSW01_00085 - heat-shock protein Hsp20, at 14,769 to 15,206
_00085
CSW01_00090: CSW01_00090 - valine--pyruvate transaminase, at 15,294 to 16,550
_00090
Position (kb) 14
15
16 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 13.892 kb on + strand at 14.055 kb on + strand, within CSW01_00075 at 14.096 kb on + strand, within CSW01_00075 at 14.096 kb on + strand, within CSW01_00075 at 14.096 kb on + strand, within CSW01_00075 at 14.104 kb on - strand, within CSW01_00075 at 14.104 kb on - strand, within CSW01_00075 at 14.108 kb on + strand, within CSW01_00075 at 14.110 kb on - strand, within CSW01_00075 at 14.114 kb on + strand, within CSW01_00075 at 14.120 kb on + strand, within CSW01_00075 at 14.166 kb on - strand, within CSW01_00075 at 14.166 kb on - strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.188 kb on + strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.196 kb on - strand, within CSW01_00075 at 14.197 kb on + strand, within CSW01_00075 at 14.225 kb on - strand, within CSW01_00075 at 14.225 kb on - strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.254 kb on + strand, within CSW01_00075 at 14.289 kb on - strand, within CSW01_00075 at 14.312 kb on + strand, within CSW01_00075 at 14.317 kb on + strand, within CSW01_00075 at 14.330 kb on - strand at 14.451 kb on + strand, within CSW01_00080 at 14.456 kb on + strand, within CSW01_00080 at 14.457 kb on - strand, within CSW01_00080 at 14.581 kb on + strand at 14.655 kb on + strand at 14.655 kb on + strand at 14.655 kb on + strand at 14.657 kb on + strand at 14.657 kb on + strand at 14.657 kb on + strand at 14.663 kb on - strand at 14.663 kb on - strand at 14.665 kb on - strand at 14.665 kb on - strand at 14.674 kb on - strand at 14.674 kb on - strand at 14.757 kb on + strand at 14.759 kb on + strand at 14.790 kb on + strand at 14.790 kb on + strand at 14.811 kb on + strand at 14.843 kb on - strand, within CSW01_00085 at 14.858 kb on + strand, within CSW01_00085 at 14.865 kb on + strand, within CSW01_00085 at 14.920 kb on + strand, within CSW01_00085 at 14.996 kb on + strand, within CSW01_00085 at 15.214 kb on - strand at 15.279 kb on + strand at 15.292 kb on + strand at 15.292 kb on + strand at 15.300 kb on - strand at 15.348 kb on + strand at 15.374 kb on + strand at 15.377 kb on - strand at 15.377 kb on - strand at 15.496 kb on - strand, within CSW01_00090 at 15.499 kb on + strand, within CSW01_00090 at 15.512 kb on + strand, within CSW01_00090 at 15.601 kb on - strand, within CSW01_00090 at 15.644 kb on + strand, within CSW01_00090 at 15.652 kb on - strand, within CSW01_00090 at 15.681 kb on - strand, within CSW01_00090 at 15.723 kb on - strand, within CSW01_00090 at 15.743 kb on + strand, within CSW01_00090 at 15.743 kb on + strand, within CSW01_00090 at 15.751 kb on - strand, within CSW01_00090 at 15.788 kb on + strand, within CSW01_00090 at 15.802 kb on + strand, within CSW01_00090 at 15.832 kb on - strand, within CSW01_00090 at 15.856 kb on - strand, within CSW01_00090 at 15.916 kb on + strand, within CSW01_00090 at 15.918 kb on + strand, within CSW01_00090 at 15.924 kb on - strand, within CSW01_00090 at 15.961 kb on + strand, within CSW01_00090 at 16.039 kb on - strand, within CSW01_00090 at 16.061 kb on + strand, within CSW01_00090 at 16.061 kb on + strand, within CSW01_00090 at 16.061 kb on + strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.069 kb on - strand, within CSW01_00090 at 16.180 kb on + strand, within CSW01_00090 at 16.180 kb on + strand, within CSW01_00090
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep2 remove 13,892 + -2.8 14,055 + CSW01_00075 0.36 -0.1 14,096 + CSW01_00075 0.45 +0.7 14,096 + CSW01_00075 0.45 -2.6 14,096 + CSW01_00075 0.45 -1.3 14,104 - CSW01_00075 0.46 +1.1 14,104 - CSW01_00075 0.46 +0.3 14,108 + CSW01_00075 0.47 +0.4 14,110 - CSW01_00075 0.48 -4.0 14,114 + CSW01_00075 0.48 -0.3 14,120 + CSW01_00075 0.50 +1.8 14,166 - CSW01_00075 0.59 +1.4 14,166 - CSW01_00075 0.59 -1.9 14,188 + CSW01_00075 0.63 +0.8 14,188 + CSW01_00075 0.63 -2.9 14,188 + CSW01_00075 0.63 -0.8 14,188 + CSW01_00075 0.63 -3.1 14,188 + CSW01_00075 0.63 +0.3 14,188 + CSW01_00075 0.63 +1.1 14,188 + CSW01_00075 0.63 -1.5 14,196 - CSW01_00075 0.65 -4.2 14,196 - CSW01_00075 0.65 -1.3 14,196 - CSW01_00075 0.65 +0.5 14,196 - CSW01_00075 0.65 +0.3 14,196 - CSW01_00075 0.65 -1.7 14,197 + CSW01_00075 0.65 +0.7 14,225 - CSW01_00075 0.71 -2.7 14,225 - CSW01_00075 0.71 +0.6 14,254 + CSW01_00075 0.77 -0.1 14,254 + CSW01_00075 0.77 +0.4 14,254 + CSW01_00075 0.77 -4.3 14,254 + CSW01_00075 0.77 +1.1 14,254 + CSW01_00075 0.77 +1.5 14,289 - CSW01_00075 0.84 -1.8 14,312 + CSW01_00075 0.89 -1.0 14,317 + CSW01_00075 0.90 +0.9 14,330 - -0.0 14,451 + CSW01_00080 0.63 +1.3 14,456 + CSW01_00080 0.68 -0.8 14,457 - CSW01_00080 0.68 -4.3 14,581 + +2.1 14,655 + -1.5 14,655 + -0.5 14,655 + +0.9 14,657 + -3.1 14,657 + -3.2 14,657 + -3.7 14,663 - -3.4 14,663 - +1.1 14,665 - +0.2 14,665 - +1.9 14,674 - -3.8 14,674 - +1.5 14,757 + -0.5 14,759 + +0.3 14,790 + -0.7 14,790 + -0.1 14,811 + -0.1 14,843 - CSW01_00085 0.17 +0.2 14,858 + CSW01_00085 0.20 -0.8 14,865 + CSW01_00085 0.22 +0.9 14,920 + CSW01_00085 0.34 +1.3 14,996 + CSW01_00085 0.52 -2.8 15,214 - -2.8 15,279 + -0.4 15,292 + +0.6 15,292 + +1.5 15,300 - +1.6 15,348 + -1.1 15,374 + +1.0 15,377 - -3.4 15,377 - +1.2 15,496 - CSW01_00090 0.16 -3.1 15,499 + CSW01_00090 0.16 +1.5 15,512 + CSW01_00090 0.17 +0.9 15,601 - CSW01_00090 0.24 +0.2 15,644 + CSW01_00090 0.28 +0.1 15,652 - CSW01_00090 0.28 +1.2 15,681 - CSW01_00090 0.31 +1.7 15,723 - CSW01_00090 0.34 +2.1 15,743 + CSW01_00090 0.36 +0.5 15,743 + CSW01_00090 0.36 +1.8 15,751 - CSW01_00090 0.36 -2.8 15,788 + CSW01_00090 0.39 -1.0 15,802 + CSW01_00090 0.40 +0.7 15,832 - CSW01_00090 0.43 -3.8 15,856 - CSW01_00090 0.45 -2.4 15,916 + CSW01_00090 0.49 -0.2 15,918 + CSW01_00090 0.50 +0.0 15,924 - CSW01_00090 0.50 +0.8 15,961 + CSW01_00090 0.53 -1.7 16,039 - CSW01_00090 0.59 -1.0 16,061 + CSW01_00090 0.61 +1.1 16,061 + CSW01_00090 0.61 -2.2 16,061 + CSW01_00090 0.61 -0.7 16,069 - CSW01_00090 0.62 -3.7 16,069 - CSW01_00090 0.62 +1.0 16,069 - CSW01_00090 0.62 +0.4 16,069 - CSW01_00090 0.62 -2.9 16,180 + CSW01_00090 0.70 +2.1 16,180 + CSW01_00090 0.70 +1.5
Or see this region's nucleotide sequence