Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_482

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_481 and Ac3H11_482 are separated by 53 nucleotidesAc3H11_482 and Ac3H11_483 are separated by 55 nucleotidesAc3H11_483 and Ac3H11_484 are separated by 48 nucleotides Ac3H11_481 - Probable Co/Zn/Cd efflux system membrane fusion protein, at 176,558 to 177,991 _481 Ac3H11_482 - RND multidrug efflux transporter; Acriflavin resistance protein, at 178,045 to 181,206 _482 Ac3H11_483 - Thioredoxin, at 181,262 to 181,594 _483 Ac3H11_484 - Molybdopterin biosynthesis protein MoeA, at 181,643 to 183,010 _484 Position (kb) 178 179 180 181 182Strain fitness (log2 ratio) -2 -1 0 1 2at 177.185 kb on + strand, within Ac3H11_481at 177.185 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.236 kb on + strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.237 kb on - strand, within Ac3H11_481at 177.329 kb on + strand, within Ac3H11_481at 177.524 kb on + strand, within Ac3H11_481at 177.524 kb on + strand, within Ac3H11_481at 177.524 kb on + strand, within Ac3H11_481at 177.524 kb on + strand, within Ac3H11_481at 177.524 kb on + strand, within Ac3H11_481at 177.525 kb on - strand, within Ac3H11_481at 177.525 kb on - strand, within Ac3H11_481at 177.525 kb on - strand, within Ac3H11_481at 178.196 kb on - strandat 178.574 kb on - strand, within Ac3H11_482at 178.574 kb on - strand, within Ac3H11_482at 178.588 kb on + strand, within Ac3H11_482at 178.588 kb on + strand, within Ac3H11_482at 178.589 kb on - strand, within Ac3H11_482at 178.589 kb on - strand, within Ac3H11_482at 178.589 kb on - strand, within Ac3H11_482at 178.589 kb on - strand, within Ac3H11_482at 178.589 kb on - strand, within Ac3H11_482at 179.044 kb on + strand, within Ac3H11_482at 179.044 kb on + strand, within Ac3H11_482at 179.044 kb on + strand, within Ac3H11_482at 179.044 kb on + strand, within Ac3H11_482at 179.045 kb on - strand, within Ac3H11_482at 179.045 kb on - strand, within Ac3H11_482at 179.045 kb on - strand, within Ac3H11_482at 179.045 kb on - strand, within Ac3H11_482at 179.272 kb on + strand, within Ac3H11_482at 179.272 kb on + strand, within Ac3H11_482at 179.272 kb on + strand, within Ac3H11_482at 179.272 kb on + strand, within Ac3H11_482at 179.273 kb on - strand, within Ac3H11_482at 179.273 kb on - strand, within Ac3H11_482at 179.273 kb on - strand, within Ac3H11_482at 179.273 kb on - strand, within Ac3H11_482at 179.273 kb on - strand, within Ac3H11_482at 179.377 kb on + strand, within Ac3H11_482at 179.377 kb on + strand, within Ac3H11_482at 179.377 kb on + strand, within Ac3H11_482at 179.378 kb on - strand, within Ac3H11_482at 179.378 kb on - strand, within Ac3H11_482at 179.378 kb on - strand, within Ac3H11_482at 179.581 kb on + strand, within Ac3H11_482at 179.581 kb on + strand, within Ac3H11_482at 179.581 kb on + strand, within Ac3H11_482at 179.582 kb on - strand, within Ac3H11_482at 179.582 kb on - strand, within Ac3H11_482at 179.582 kb on - strand, within Ac3H11_482at 179.582 kb on - strand, within Ac3H11_482at 179.867 kb on - strand, within Ac3H11_482at 179.932 kb on + strand, within Ac3H11_482at 179.933 kb on - strand, within Ac3H11_482at 179.933 kb on - strand, within Ac3H11_482at 180.082 kb on + strand, within Ac3H11_482at 180.082 kb on + strand, within Ac3H11_482at 180.082 kb on + strand, within Ac3H11_482at 180.082 kb on + strand, within Ac3H11_482at 180.082 kb on + strand, within Ac3H11_482at 180.082 kb on + strand, within Ac3H11_482at 180.083 kb on - strand, within Ac3H11_482at 180.083 kb on - strand, within Ac3H11_482at 180.083 kb on - strand, within Ac3H11_482at 180.106 kb on + strand, within Ac3H11_482at 180.107 kb on - strand, within Ac3H11_482at 180.107 kb on - strand, within Ac3H11_482at 180.314 kb on - strand, within Ac3H11_482at 180.334 kb on + strand, within Ac3H11_482at 180.334 kb on + strand, within Ac3H11_482at 180.334 kb on + strand, within Ac3H11_482at 180.334 kb on + strand, within Ac3H11_482at 180.335 kb on - strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.397 kb on + strand, within Ac3H11_482at 180.398 kb on - strand, within Ac3H11_482at 180.398 kb on - strand, within Ac3H11_482at 180.398 kb on - strand, within Ac3H11_482at 180.398 kb on - strand, within Ac3H11_482at 180.398 kb on - strand, within Ac3H11_482at 180.532 kb on + strand, within Ac3H11_482at 180.533 kb on - strand, within Ac3H11_482at 180.533 kb on - strand, within Ac3H11_482at 180.595 kb on + strand, within Ac3H11_482at 180.595 kb on + strand, within Ac3H11_482at 180.808 kb on + strand, within Ac3H11_482at 180.951 kb on + strandat 180.951 kb on + strandat 180.951 kb on + strandat 180.952 kb on - strandat 180.952 kb on - strandat 180.952 kb on - strandat 181.059 kb on + strandat 181.059 kb on + strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.060 kb on - strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.105 kb on + strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.106 kb on - strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.192 kb on + strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.193 kb on - strandat 181.204 kb on + strandat 181.204 kb on + strandat 181.205 kb on - strandat 181.205 kb on - strandat 181.223 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.249 kb on + strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.250 kb on - strandat 181.252 kb on + strandat 181.253 kb on - strandat 181.253 kb on - strandat 181.322 kb on + strand, within Ac3H11_483at 181.587 kb on + strandat 181.594 kb on + strandat 181.595 kb on - strandat 181.595 kb on - strandat 181.595 kb on - strandat 181.595 kb on - strandat 181.827 kb on + strand, within Ac3H11_484at 181.827 kb on + strand, within Ac3H11_484at 181.827 kb on + strand, within Ac3H11_484at 181.828 kb on - strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.931 kb on + strand, within Ac3H11_484at 181.932 kb on - strand, within Ac3H11_484at 181.932 kb on - strand, within Ac3H11_484at 182.026 kb on + strand, within Ac3H11_484at 182.029 kb on - strand, within Ac3H11_484

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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177,185 + Ac3H11_481 0.44 +0.3
177,185 + Ac3H11_481 0.44 +1.0
177,236 + Ac3H11_481 0.47 -0.4
177,236 + Ac3H11_481 0.47 +0.1
177,236 + Ac3H11_481 0.47 +0.2
177,236 + Ac3H11_481 0.47 +0.9
177,237 - Ac3H11_481 0.47 +0.8
177,237 - Ac3H11_481 0.47 +0.1
177,237 - Ac3H11_481 0.47 -0.6
177,237 - Ac3H11_481 0.47 +1.1
177,237 - Ac3H11_481 0.47 +0.1
177,329 + Ac3H11_481 0.54 +0.4
177,524 + Ac3H11_481 0.67 +0.5
177,524 + Ac3H11_481 0.67 +0.4
177,524 + Ac3H11_481 0.67 +1.0
177,524 + Ac3H11_481 0.67 -0.7
177,524 + Ac3H11_481 0.67 +0.4
177,525 - Ac3H11_481 0.67 +0.8
177,525 - Ac3H11_481 0.67 +0.5
177,525 - Ac3H11_481 0.67 +0.8
178,196 - +1.0
178,574 - Ac3H11_482 0.17 +0.5
178,574 - Ac3H11_482 0.17 -0.7
178,588 + Ac3H11_482 0.17 +0.3
178,588 + Ac3H11_482 0.17 -0.4
178,589 - Ac3H11_482 0.17 +1.3
178,589 - Ac3H11_482 0.17 +0.6
178,589 - Ac3H11_482 0.17 +0.4
178,589 - Ac3H11_482 0.17 -0.1
178,589 - Ac3H11_482 0.17 -0.0
179,044 + Ac3H11_482 0.32 +0.1
179,044 + Ac3H11_482 0.32 +0.3
179,044 + Ac3H11_482 0.32 +0.3
179,044 + Ac3H11_482 0.32 +0.2
179,045 - Ac3H11_482 0.32 -0.0
179,045 - Ac3H11_482 0.32 -0.7
179,045 - Ac3H11_482 0.32 +0.1
179,045 - Ac3H11_482 0.32 +0.6
179,272 + Ac3H11_482 0.39 -0.5
179,272 + Ac3H11_482 0.39 +0.1
179,272 + Ac3H11_482 0.39 +0.7
179,272 + Ac3H11_482 0.39 -0.2
179,273 - Ac3H11_482 0.39 +0.3
179,273 - Ac3H11_482 0.39 +0.6
179,273 - Ac3H11_482 0.39 -0.1
179,273 - Ac3H11_482 0.39 +0.1
179,273 - Ac3H11_482 0.39 -0.1
179,377 + Ac3H11_482 0.42 -0.1
179,377 + Ac3H11_482 0.42 -0.9
179,377 + Ac3H11_482 0.42 -0.1
179,378 - Ac3H11_482 0.42 -0.0
179,378 - Ac3H11_482 0.42 +0.5
179,378 - Ac3H11_482 0.42 -0.7
179,581 + Ac3H11_482 0.49 +0.9
179,581 + Ac3H11_482 0.49 +0.1
179,581 + Ac3H11_482 0.49 +0.7
179,582 - Ac3H11_482 0.49 +0.4
179,582 - Ac3H11_482 0.49 +0.2
179,582 - Ac3H11_482 0.49 +0.2
179,582 - Ac3H11_482 0.49 +0.2
179,867 - Ac3H11_482 0.58 +1.1
179,932 + Ac3H11_482 0.60 +1.9
179,933 - Ac3H11_482 0.60 +0.5
179,933 - Ac3H11_482 0.60 +0.9
180,082 + Ac3H11_482 0.64 -0.5
180,082 + Ac3H11_482 0.64 -0.0
180,082 + Ac3H11_482 0.64 -0.7
180,082 + Ac3H11_482 0.64 -0.1
180,082 + Ac3H11_482 0.64 +0.6
180,082 + Ac3H11_482 0.64 -0.2
180,083 - Ac3H11_482 0.64 +0.7
180,083 - Ac3H11_482 0.64 +0.4
180,083 - Ac3H11_482 0.64 -0.1
180,106 + Ac3H11_482 0.65 +0.5
180,107 - Ac3H11_482 0.65 -0.1
180,107 - Ac3H11_482 0.65 -0.5
180,314 - Ac3H11_482 0.72 -1.0
180,334 + Ac3H11_482 0.72 +0.3
180,334 + Ac3H11_482 0.72 -0.6
180,334 + Ac3H11_482 0.72 +0.4
180,334 + Ac3H11_482 0.72 +1.0
180,335 - Ac3H11_482 0.72 +0.8
180,397 + Ac3H11_482 0.74 -0.7
180,397 + Ac3H11_482 0.74 +0.7
180,397 + Ac3H11_482 0.74 -0.3
180,397 + Ac3H11_482 0.74 -1.1
180,397 + Ac3H11_482 0.74 +1.4
180,397 + Ac3H11_482 0.74 +1.9
180,397 + Ac3H11_482 0.74 +1.2
180,397 + Ac3H11_482 0.74 -0.4
180,397 + Ac3H11_482 0.74 -0.3
180,398 - Ac3H11_482 0.74 +0.1
180,398 - Ac3H11_482 0.74 +0.2
180,398 - Ac3H11_482 0.74 -0.2
180,398 - Ac3H11_482 0.74 -0.9
180,398 - Ac3H11_482 0.74 -0.2
180,532 + Ac3H11_482 0.79 -0.0
180,533 - Ac3H11_482 0.79 -0.3
180,533 - Ac3H11_482 0.79 +0.2
180,595 + Ac3H11_482 0.81 -0.2
180,595 + Ac3H11_482 0.81 +0.3
180,808 + Ac3H11_482 0.87 +0.5
180,951 + +0.5
180,951 + +0.3
180,951 + +1.4
180,952 - +0.4
180,952 - -1.3
180,952 - +0.4
181,059 + +0.8
181,059 + -0.2
181,060 - -0.2
181,060 - -1.2
181,060 - -0.5
181,060 - +0.3
181,060 - -0.4
181,105 + -0.3
181,105 + +0.6
181,105 + +0.1
181,105 + +0.4
181,105 + -0.7
181,105 + -1.6
181,105 + -1.3
181,106 - +0.2
181,106 - -0.4
181,106 - -0.5
181,106 - +0.2
181,106 - +0.5
181,106 - +0.8
181,106 - +0.6
181,106 - +0.5
181,106 - -1.9
181,106 - +0.8
181,106 - -0.9
181,106 - -0.3
181,106 - -0.0
181,106 - +0.1
181,106 - +0.4
181,106 - +0.3
181,192 + +0.5
181,192 + -1.0
181,192 + +0.5
181,192 + -1.0
181,192 + -0.5
181,192 + -0.4
181,193 - +0.6
181,193 - +0.4
181,193 - +0.0
181,193 - +1.4
181,193 - +0.2
181,204 + +1.4
181,204 + -0.4
181,205 - +0.8
181,205 - +0.2
181,223 + +1.3
181,249 + +0.4
181,249 + -0.4
181,249 + +0.8
181,249 + -0.9
181,249 + +0.3
181,249 + +1.6
181,249 + -0.1
181,249 + +0.1
181,249 + -1.4
181,250 - -0.8
181,250 - +0.3
181,250 - -0.6
181,250 - -0.3
181,250 - +1.2
181,250 - +0.3
181,250 - +0.3
181,250 - +1.9
181,250 - +0.8
181,250 - +1.5
181,250 - +1.6
181,250 - -0.4
181,250 - -0.6
181,252 + -0.3
181,253 - -0.3
181,253 - +0.7
181,322 + Ac3H11_483 0.18 +1.1
181,587 + -0.9
181,594 + +1.3
181,595 - +0.5
181,595 - -0.3
181,595 - -0.6
181,595 - +0.2
181,827 + Ac3H11_484 0.13 +0.5
181,827 + Ac3H11_484 0.13 +0.5
181,827 + Ac3H11_484 0.13 +0.4
181,828 - Ac3H11_484 0.14 -0.4
181,931 + Ac3H11_484 0.21 +0.7
181,931 + Ac3H11_484 0.21 +0.4
181,931 + Ac3H11_484 0.21 -0.9
181,931 + Ac3H11_484 0.21 -0.5
181,932 - Ac3H11_484 0.21 -0.2
181,932 - Ac3H11_484 0.21 -0.3
182,026 + Ac3H11_484 0.28 -0.1
182,029 - Ac3H11_484 0.28 -1.5

Or see this region's nucleotide sequence