Strain Fitness in Acidovorax sp. GW101-3H11 around Ac3H11_1423

Experiment: L-Proline (N)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAc3H11_1421 and Ac3H11_1422 are separated by 58 nucleotidesAc3H11_1422 and Ac3H11_1423 are separated by 199 nucleotidesAc3H11_1423 and Ac3H11_1424 are separated by 30 nucleotidesAc3H11_1424 and Ac3H11_1425 are separated by 33 nucleotides Ac3H11_1421 - Signal transduction histidine kinase CheA (EC 2.7.3.-), at 107,879 to 110,014 _1421 Ac3H11_1422 - Positive regulator of CheA protein activity (CheW), at 110,073 to 110,561 _1422 Ac3H11_1423 - Chemotaxis protein methyltransferase CheR (EC 2.1.1.80), at 110,761 to 111,573 _1423 Ac3H11_1424 - Chemotaxis protein CheD, at 111,604 to 112,350 _1424 Ac3H11_1425 - Chemotaxis response regulator protein-glutamate methylesterase CheB (EC 3.1.1.61), at 112,384 to 113,460 _1425 Position (kb) 110 111 112Strain fitness (log2 ratio) -2 -1 0 1at 109.913 kb on + strandat 109.913 kb on + strandat 109.913 kb on + strandat 109.914 kb on - strandat 109.914 kb on - strandat 110.087 kb on + strandat 110.087 kb on + strandat 110.087 kb on + strandat 110.087 kb on + strandat 110.087 kb on + strandat 110.088 kb on - strandat 110.088 kb on - strandat 110.088 kb on - strandat 110.088 kb on - strandat 110.088 kb on - strandat 110.124 kb on + strand, within Ac3H11_1422at 110.124 kb on + strand, within Ac3H11_1422at 110.124 kb on + strand, within Ac3H11_1422at 110.125 kb on - strand, within Ac3H11_1422at 110.155 kb on - strand, within Ac3H11_1422at 110.155 kb on - strand, within Ac3H11_1422at 110.155 kb on - strand, within Ac3H11_1422at 110.193 kb on + strand, within Ac3H11_1422at 110.193 kb on + strand, within Ac3H11_1422at 110.313 kb on + strand, within Ac3H11_1422at 110.313 kb on + strand, within Ac3H11_1422at 110.313 kb on + strand, within Ac3H11_1422at 110.313 kb on + strand, within Ac3H11_1422at 110.313 kb on + strand, within Ac3H11_1422at 110.314 kb on - strand, within Ac3H11_1422at 110.559 kb on + strandat 110.559 kb on + strandat 110.559 kb on + strandat 110.667 kb on + strandat 110.667 kb on + strandat 110.667 kb on + strandat 110.668 kb on - strandat 110.668 kb on - strandat 110.668 kb on - strandat 110.668 kb on - strandat 110.668 kb on - strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.731 kb on + strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.732 kb on - strandat 110.824 kb on + strandat 110.824 kb on + strandat 110.824 kb on + strandat 110.824 kb on + strandat 110.824 kb on + strandat 110.825 kb on - strandat 110.872 kb on + strand, within Ac3H11_1423at 110.872 kb on + strand, within Ac3H11_1423at 110.873 kb on - strand, within Ac3H11_1423at 110.873 kb on - strand, within Ac3H11_1423at 110.873 kb on - strand, within Ac3H11_1423at 110.873 kb on - strand, within Ac3H11_1423at 110.873 kb on - strand, within Ac3H11_1423at 110.926 kb on + strand, within Ac3H11_1423at 110.927 kb on - strand, within Ac3H11_1423at 110.927 kb on - strand, within Ac3H11_1423at 111.097 kb on - strand, within Ac3H11_1423at 111.112 kb on + strand, within Ac3H11_1423at 111.220 kb on + strand, within Ac3H11_1423at 111.221 kb on - strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.421 kb on + strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.422 kb on - strand, within Ac3H11_1423at 111.537 kb on + strandat 111.537 kb on + strandat 111.538 kb on - strandat 111.559 kb on + strandat 111.559 kb on + strandat 111.559 kb on + strandat 111.559 kb on + strandat 111.559 kb on + strandat 111.559 kb on + strandat 111.560 kb on - strandat 111.560 kb on - strandat 111.560 kb on - strandat 111.560 kb on - strandat 111.560 kb on - strandat 111.560 kb on - strandat 111.705 kb on + strand, within Ac3H11_1424at 111.705 kb on + strand, within Ac3H11_1424at 111.706 kb on - strand, within Ac3H11_1424at 111.706 kb on - strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.709 kb on + strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.710 kb on - strand, within Ac3H11_1424at 111.796 kb on + strand, within Ac3H11_1424at 111.797 kb on - strand, within Ac3H11_1424at 111.797 kb on - strand, within Ac3H11_1424at 111.797 kb on - strand, within Ac3H11_1424at 111.797 kb on - strand, within Ac3H11_1424at 111.847 kb on + strand, within Ac3H11_1424at 111.847 kb on + strand, within Ac3H11_1424at 111.847 kb on + strand, within Ac3H11_1424at 111.848 kb on - strand, within Ac3H11_1424at 111.848 kb on - strand, within Ac3H11_1424at 111.848 kb on - strand, within Ac3H11_1424at 111.848 kb on - strand, within Ac3H11_1424at 111.992 kb on - strand, within Ac3H11_1424at 112.000 kb on + strand, within Ac3H11_1424at 112.000 kb on + strand, within Ac3H11_1424at 112.000 kb on + strand, within Ac3H11_1424at 112.000 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.147 kb on + strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.148 kb on - strand, within Ac3H11_1424at 112.194 kb on + strand, within Ac3H11_1424at 112.194 kb on + strand, within Ac3H11_1424at 112.194 kb on + strand, within Ac3H11_1424at 112.194 kb on + strand, within Ac3H11_1424at 112.194 kb on + strand, within Ac3H11_1424at 112.195 kb on - strand, within Ac3H11_1424at 112.195 kb on - strand, within Ac3H11_1424at 112.195 kb on - strand, within Ac3H11_1424at 112.195 kb on - strand, within Ac3H11_1424at 112.198 kb on + strand, within Ac3H11_1424at 112.198 kb on + strand, within Ac3H11_1424at 112.198 kb on + strand, within Ac3H11_1424at 112.198 kb on + strand, within Ac3H11_1424at 112.198 kb on + strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.199 kb on - strand, within Ac3H11_1424at 112.364 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (N)
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109,913 + +0.6
109,913 + +0.5
109,913 + +0.5
109,914 - +0.9
109,914 - +0.3
110,087 + +0.6
110,087 + +1.1
110,087 + +0.9
110,087 + +0.4
110,087 + -0.2
110,088 - +0.4
110,088 - +1.0
110,088 - -0.2
110,088 - +0.4
110,088 - +0.8
110,124 + Ac3H11_1422 0.10 +0.7
110,124 + Ac3H11_1422 0.10 +0.4
110,124 + Ac3H11_1422 0.10 -0.0
110,125 - Ac3H11_1422 0.11 -0.0
110,155 - Ac3H11_1422 0.17 +0.6
110,155 - Ac3H11_1422 0.17 +0.7
110,155 - Ac3H11_1422 0.17 +0.3
110,193 + Ac3H11_1422 0.25 +0.2
110,193 + Ac3H11_1422 0.25 +0.2
110,313 + Ac3H11_1422 0.49 +0.3
110,313 + Ac3H11_1422 0.49 +0.8
110,313 + Ac3H11_1422 0.49 +1.1
110,313 + Ac3H11_1422 0.49 +0.1
110,313 + Ac3H11_1422 0.49 +0.7
110,314 - Ac3H11_1422 0.49 -0.8
110,559 + -0.2
110,559 + +0.9
110,559 + -1.9
110,667 + -0.1
110,667 + -0.2
110,667 + +1.2
110,668 - +0.4
110,668 - +0.7
110,668 - -0.2
110,668 - +0.2
110,668 - +0.4
110,731 + -0.3
110,731 + +0.3
110,731 + -0.4
110,731 + -0.5
110,731 + +0.1
110,731 + +0.3
110,731 + -0.4
110,731 + +0.5
110,731 + -0.6
110,732 - +0.5
110,732 - -0.1
110,732 - +0.4
110,732 - +0.3
110,732 - +0.7
110,732 - +1.0
110,732 - +0.7
110,732 - -0.4
110,824 + +0.7
110,824 + +0.6
110,824 + +0.3
110,824 + -0.3
110,824 + +0.2
110,825 - +0.4
110,872 + Ac3H11_1423 0.14 +0.8
110,872 + Ac3H11_1423 0.14 +0.8
110,873 - Ac3H11_1423 0.14 +0.9
110,873 - Ac3H11_1423 0.14 +1.0
110,873 - Ac3H11_1423 0.14 +0.7
110,873 - Ac3H11_1423 0.14 +0.4
110,873 - Ac3H11_1423 0.14 -0.1
110,926 + Ac3H11_1423 0.20 +0.2
110,927 - Ac3H11_1423 0.20 -0.4
110,927 - Ac3H11_1423 0.20 +0.4
111,097 - Ac3H11_1423 0.41 +1.4
111,112 + Ac3H11_1423 0.43 -0.1
111,220 + Ac3H11_1423 0.56 +0.7
111,221 - Ac3H11_1423 0.57 -0.0
111,421 + Ac3H11_1423 0.81 +0.4
111,421 + Ac3H11_1423 0.81 +0.8
111,421 + Ac3H11_1423 0.81 +0.8
111,421 + Ac3H11_1423 0.81 -0.3
111,421 + Ac3H11_1423 0.81 +0.6
111,421 + Ac3H11_1423 0.81 +0.8
111,421 + Ac3H11_1423 0.81 +0.3
111,422 - Ac3H11_1423 0.81 -0.9
111,422 - Ac3H11_1423 0.81 +1.5
111,422 - Ac3H11_1423 0.81 +0.7
111,422 - Ac3H11_1423 0.81 +0.7
111,422 - Ac3H11_1423 0.81 +0.1
111,422 - Ac3H11_1423 0.81 +0.1
111,422 - Ac3H11_1423 0.81 +0.5
111,537 + +0.4
111,537 + +0.2
111,538 - +0.8
111,559 + +0.1
111,559 + +0.3
111,559 + +0.2
111,559 + +0.7
111,559 + -0.4
111,559 + +1.4
111,560 - -0.1
111,560 - +0.5
111,560 - +0.8
111,560 - +1.3
111,560 - +0.3
111,560 - -1.3
111,705 + Ac3H11_1424 0.14 +0.6
111,705 + Ac3H11_1424 0.14 -0.6
111,706 - Ac3H11_1424 0.14 +0.8
111,706 - Ac3H11_1424 0.14 +0.1
111,709 + Ac3H11_1424 0.14 +0.0
111,709 + Ac3H11_1424 0.14 +0.1
111,709 + Ac3H11_1424 0.14 -0.0
111,709 + Ac3H11_1424 0.14 -0.5
111,709 + Ac3H11_1424 0.14 +0.1
111,709 + Ac3H11_1424 0.14 -0.1
111,709 + Ac3H11_1424 0.14 +0.6
111,709 + Ac3H11_1424 0.14 +0.2
111,709 + Ac3H11_1424 0.14 -0.5
111,709 + Ac3H11_1424 0.14 -0.2
111,709 + Ac3H11_1424 0.14 +0.6
111,709 + Ac3H11_1424 0.14 -0.4
111,709 + Ac3H11_1424 0.14 -0.1
111,709 + Ac3H11_1424 0.14 +0.4
111,710 - Ac3H11_1424 0.14 -0.5
111,710 - Ac3H11_1424 0.14 +0.6
111,710 - Ac3H11_1424 0.14 -0.1
111,710 - Ac3H11_1424 0.14 +0.4
111,710 - Ac3H11_1424 0.14 -0.1
111,710 - Ac3H11_1424 0.14 +0.4
111,710 - Ac3H11_1424 0.14 -0.4
111,710 - Ac3H11_1424 0.14 -0.0
111,710 - Ac3H11_1424 0.14 +0.9
111,710 - Ac3H11_1424 0.14 +0.5
111,710 - Ac3H11_1424 0.14 +0.2
111,710 - Ac3H11_1424 0.14 +0.7
111,710 - Ac3H11_1424 0.14 -0.8
111,710 - Ac3H11_1424 0.14 -0.5
111,710 - Ac3H11_1424 0.14 +0.7
111,710 - Ac3H11_1424 0.14 +0.8
111,710 - Ac3H11_1424 0.14 +0.1
111,710 - Ac3H11_1424 0.14 -0.5
111,710 - Ac3H11_1424 0.14 +0.1
111,796 + Ac3H11_1424 0.26 +0.7
111,797 - Ac3H11_1424 0.26 -0.8
111,797 - Ac3H11_1424 0.26 +0.8
111,797 - Ac3H11_1424 0.26 -0.2
111,797 - Ac3H11_1424 0.26 -0.2
111,847 + Ac3H11_1424 0.33 +0.8
111,847 + Ac3H11_1424 0.33 +0.4
111,847 + Ac3H11_1424 0.33 +0.0
111,848 - Ac3H11_1424 0.33 -0.4
111,848 - Ac3H11_1424 0.33 -0.3
111,848 - Ac3H11_1424 0.33 +0.7
111,848 - Ac3H11_1424 0.33 +0.2
111,992 - Ac3H11_1424 0.52 -0.3
112,000 + Ac3H11_1424 0.53 +0.6
112,000 + Ac3H11_1424 0.53 +0.0
112,000 + Ac3H11_1424 0.53 -0.1
112,000 + Ac3H11_1424 0.53 -0.5
112,147 + Ac3H11_1424 0.73 +0.2
112,147 + Ac3H11_1424 0.73 -1.0
112,147 + Ac3H11_1424 0.73 +0.7
112,147 + Ac3H11_1424 0.73 +0.3
112,147 + Ac3H11_1424 0.73 +0.7
112,147 + Ac3H11_1424 0.73 +0.2
112,147 + Ac3H11_1424 0.73 -0.9
112,147 + Ac3H11_1424 0.73 -0.0
112,147 + Ac3H11_1424 0.73 +0.9
112,148 - Ac3H11_1424 0.73 +0.2
112,148 - Ac3H11_1424 0.73 -1.0
112,148 - Ac3H11_1424 0.73 +0.1
112,148 - Ac3H11_1424 0.73 -0.6
112,148 - Ac3H11_1424 0.73 +0.2
112,148 - Ac3H11_1424 0.73 +0.1
112,148 - Ac3H11_1424 0.73 +0.1
112,148 - Ac3H11_1424 0.73 -0.6
112,148 - Ac3H11_1424 0.73 +0.2
112,148 - Ac3H11_1424 0.73 +0.5
112,148 - Ac3H11_1424 0.73 +0.5
112,194 + Ac3H11_1424 0.79 -0.5
112,194 + Ac3H11_1424 0.79 +0.2
112,194 + Ac3H11_1424 0.79 -0.5
112,194 + Ac3H11_1424 0.79 +0.0
112,194 + Ac3H11_1424 0.79 +0.4
112,195 - Ac3H11_1424 0.79 -0.5
112,195 - Ac3H11_1424 0.79 +0.5
112,195 - Ac3H11_1424 0.79 +0.3
112,195 - Ac3H11_1424 0.79 +0.2
112,198 + Ac3H11_1424 0.80 +0.4
112,198 + Ac3H11_1424 0.80 +0.3
112,198 + Ac3H11_1424 0.80 +0.7
112,198 + Ac3H11_1424 0.80 +1.3
112,198 + Ac3H11_1424 0.80 -0.2
112,199 - Ac3H11_1424 0.80 +0.9
112,199 - Ac3H11_1424 0.80 -0.2
112,199 - Ac3H11_1424 0.80 +0.6
112,199 - Ac3H11_1424 0.80 +0.4
112,199 - Ac3H11_1424 0.80 -0.4
112,199 - Ac3H11_1424 0.80 -0.2
112,199 - Ac3H11_1424 0.80 +1.5
112,364 + +0.6

Or see this region's nucleotide sequence