Strain Fitness in Pseudomonas fluorescens FW300-N2E3 around AO353_08110

Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	1-ethyl-3-methylimidazolium acetate 30 mM
1,789,827	+		AO353_08100	0.17	+1.3
1,789,827	+		AO353_08100	0.17	+1.3
1,789,827	+		AO353_08100	0.17	-1.5
1,789,828	-		AO353_08100	0.18	+0.2
1,789,828	-		AO353_08100	0.18	-1.9
1,789,828	-		AO353_08100	0.18	-1.3
1,790,085	+		AO353_08100	0.88	-1.3
1,790,085	+		AO353_08100	0.88	-1.3
1,790,086	-		AO353_08100	0.88	-1.3
1,790,086	-		AO353_08100	0.88	+0.9
1,790,119	+				-1.2
1,790,119	+				-2.6
1,790,119	+				-0.1
1,790,119	+				-1.5
1,790,120	-				+0.7
1,790,120	-				-0.9
1,790,120	-				-1.9
1,790,120	-				-0.7
1,790,120	-				-0.2
1,790,146	+				-1.5
1,790,146	+				+2.3
1,790,146	+				-0.3
1,790,147	-				+1.5
1,790,147	-				+2.3
1,790,147	-				+0.9
1,790,187	+				-0.5
1,790,188	-				-1.9
1,790,188	-				-1.4
1,790,216	+				+1.2
1,790,217	-				+1.9
1,790,335	+		AO353_08105	0.37	-2.4
1,790,335	+		AO353_08105	0.37	-1.3
1,790,336	-		AO353_08105	0.37	-0.6
1,790,336	-		AO353_08105	0.37	-2.0
1,790,336	-		AO353_08105	0.37	+0.0
1,790,336	-		AO353_08105	0.37	-1.7
1,790,336	-		AO353_08105	0.37	-0.6
1,790,336	-		AO353_08105	0.37	-1.5
1,790,336	-		AO353_08105	0.37	-0.3
1,790,336	-		AO353_08105	0.37	-2.4
1,790,336	-		AO353_08105	0.37	-0.3
1,790,501	+		AO353_08105	0.78	-1.3
1,790,501	+		AO353_08105	0.78	-0.3
1,790,501	+		AO353_08105	0.78	-2.4
1,790,501	+		AO353_08105	0.78	+2.3
1,790,501	+		AO353_08105	0.78	+0.1
1,790,502	-		AO353_08105	0.78	+1.9
1,790,502	-		AO353_08105	0.78	-1.0
1,790,502	-		AO353_08105	0.78	-1.7
1,790,502	-		AO353_08105	0.78	-0.4
1,790,590	+				+1.3
1,790,590	+				+1.0
1,790,590	+				-0.7
1,790,599	+				-0.6
1,790,599	+				-2.0
1,790,599	+				-1.3
1,790,600	-				+0.3
1,790,600	-				-1.0
1,790,693	+				-1.5
1,790,693	+				+0.3
1,790,693	+				+0.9
1,790,693	+				+0.9
1,790,694	-				+0.8
1,790,716	+				-1.3
1,790,716	+				+0.6
1,790,716	+				+0.9
1,790,716	+				-1.0
1,790,716	+				-1.0
1,790,716	+				-0.1
1,790,716	+				-0.7
1,790,716	+				+1.5
1,790,717	-				+0.5
1,790,717	-				-0.5
1,790,717	-				-0.7
1,790,873	+				-1.5
1,790,873	+				-3.2
1,790,874	-				-1.7
1,790,876	-				-1.5
1,790,876	-				-1.9
1,790,876	-				-1.7
1,790,884	+				-1.0
1,790,936	+		AO353_08110	0.12	-0.7
1,790,936	+		AO353_08110	0.12	-1.9
1,790,936	+		AO353_08110	0.12	+0.1
1,790,936	+		AO353_08110	0.12	+0.6
1,790,936	+		AO353_08110	0.12	-1.3
1,790,936	+		AO353_08110	0.12	-0.3
1,790,936	+		AO353_08110	0.12	-1.0
1,790,936	+		AO353_08110	0.12	-0.7
1,790,937	-		AO353_08110	0.12	-1.9
1,790,937	-		AO353_08110	0.12	+0.5
1,790,937	-		AO353_08110	0.12	-2.3
1,790,937	-		AO353_08110	0.12	-0.3
1,790,937	-		AO353_08110	0.12	-0.5
1,790,937	-		AO353_08110	0.12	+0.7
1,790,937	-		AO353_08110	0.12	-0.7
1,790,937	-		AO353_08110	0.12	+2.4
1,790,937	-		AO353_08110	0.12	-0.3
1,790,937	-		AO353_08110	0.12	-1.7
1,790,937	-		AO353_08110	0.12	-1.0
1,790,938	+		AO353_08110	0.12	-0.1
1,790,957	+		AO353_08110	0.14	+0.5
1,790,957	+		AO353_08110	0.14	-0.3
1,791,117	-		AO353_08110	0.31	+2.3
1,791,125	+		AO353_08110	0.31	+0.3
1,791,125	+		AO353_08110	0.31	-0.3
1,791,125	+		AO353_08110	0.31	+0.3
1,791,126	-		AO353_08110	0.32	+1.3
1,791,126	-		AO353_08110	0.32	-0.3
1,791,126	-		AO353_08110	0.32	-1.6
1,791,264	+		AO353_08110	0.46	-0.0
1,791,264	+		AO353_08110	0.46	-2.5
1,791,264	+		AO353_08110	0.46	-1.0
1,791,265	-		AO353_08110	0.46	-0.7
1,791,426	-		AO353_08110	0.63	-1.7
1,791,648	+		AO353_08110	0.86	-0.7
1,791,649	-		AO353_08110	0.86	-1.3
1,791,649	-		AO353_08110	0.86	-1.3
1,791,649	-		AO353_08110	0.86	-2.5
1,791,649	-		AO353_08110	0.86	-2.3
1,791,649	-		AO353_08110	0.86	-0.7
1,791,694	+				-0.5
1,791,695	-				-2.8
1,791,695	-				-2.4
1,791,766	+				+2.3
1,791,766	+				+0.3
1,791,766	+				+0.3
1,791,767	-				+0.3
1,791,779	+				-0.1
1,791,780	-				+0.1
1,791,781	+				-0.6
1,791,781	+				-1.5
1,791,781	+				+0.1
1,791,781	+				+0.4
1,791,781	+				+0.5
1,791,781	+				+0.4
1,791,781	+				+0.4
1,791,781	+				+0.3
1,791,781	+				-2.4
1,791,781	+				+0.1
1,791,781	+				+0.3
1,791,782	-				-2.2
1,791,782	-				-1.1
1,791,782	-				+1.3
1,791,782	-				-1.3
1,791,782	-				-0.2
1,791,782	-				+0.0
1,791,782	-				+1.3
1,791,782	-				-1.5
1,791,782	-				-0.0
1,791,782	-				-1.3
1,791,782	-				+0.5
1,791,782	-				+0.0
1,791,782	-				-0.3
1,791,782	-				-0.2
1,791,782	-				+0.2
1,791,782	-				+0.3
1,791,782	-				+1.5
1,791,782	-				-1.3
1,791,782	-				-1.5
1,791,782	-				-3.1
1,791,795	+				+0.3
1,791,812	+				+0.8
1,791,855	+				+1.3
1,791,855	+				+0.3
1,791,855	+				-0.3
1,791,855	+				-0.7
1,791,856	-				-2.0
1,791,856	-				-0.0
1,791,856	-				-1.3
1,791,927	+				+0.3
1,791,928	-				-1.7
1,791,928	-				-1.5
1,792,163	+		AO353_08115	0.34	-1.0
1,792,164	-		AO353_08115	0.34	-1.7
1,792,164	-		AO353_08115	0.34	+1.3
1,792,202	+		AO353_08115	0.38	-1.1
1,792,387	+		AO353_08115	0.59	-1.9
1,792,387	+		AO353_08115	0.59	-0.9
1,792,388	-		AO353_08115	0.59	+0.3
1,792,388	-		AO353_08115	0.59	-2.2
1,792,453	+		AO353_08115	0.66	-0.9
1,792,453	+		AO353_08115	0.66	-0.5
1,792,453	+		AO353_08115	0.66	-1.0
1,792,453	+		AO353_08115	0.66	-1.3
1,792,454	-		AO353_08115	0.66	-0.0
1,792,454	-		AO353_08115	0.66	-1.2
1,792,454	-		AO353_08115	0.66	-1.3
1,792,454	-		AO353_08115	0.66	-1.3
1,792,455	+		AO353_08115	0.67	-0.5
1,792,455	+		AO353_08115	0.67	-0.3
1,792,455	+		AO353_08115	0.67	-0.8
1,792,455	+		AO353_08115	0.67	-0.9
1,792,455	+		AO353_08115	0.67	+0.7
1,792,531	+		AO353_08115	0.75	-2.2
1,792,532	-		AO353_08115	0.75	-1.3
1,792,532	-		AO353_08115	0.75	-1.9
1,792,532	-		AO353_08115	0.75	-3.7
1,792,532	-		AO353_08115	0.75	-0.7
1,792,532	-		AO353_08115	0.75	-1.3
1,792,532	-		AO353_08115	0.75	-2.6
1,792,579	+		AO353_08115	0.80	-1.0
1,792,580	-		AO353_08115	0.80	-3.5
1,792,749	+				+0.2
1,792,749	+				+0.3
1,792,749	+				-0.6
1,792,749	+				+0.8