Experiment: 1-ethyl-3-methylimidazolium acetate 30 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO353_03820 and AO353_03825 are separated by 9 nucleotides AO353_03825 and AO353_03830 are separated by 9 nucleotides AO353_03830 and AO353_03835 are separated by 335 nucleotides
AO353_03820: AO353_03820 - Asp/Glu/hydantoin racemase, at 817,703 to 818,335
_03820
AO353_03825: AO353_03825 - hypothetical protein, at 818,345 to 818,608
_03825
AO353_03830: AO353_03830 - antibiotic biosynthesis monooxygenase, at 818,618 to 818,983
_03830
AO353_03835: AO353_03835 - AraC family transcriptional regulator, at 819,319 to 820,248
_03835
Position (kb) 818
819 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 817.664 kb on - strand at 817.664 kb on - strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.681 kb on + strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.682 kb on - strand at 817.714 kb on + strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.715 kb on - strand at 817.722 kb on - strand at 817.722 kb on - strand at 817.722 kb on - strand at 817.722 kb on - strand at 817.724 kb on + strand at 817.724 kb on + strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.725 kb on - strand at 817.842 kb on - strand, within AO353_03820 at 817.842 kb on - strand, within AO353_03820 at 817.865 kb on + strand, within AO353_03820 at 817.865 kb on + strand, within AO353_03820 at 817.865 kb on + strand, within AO353_03820 at 817.866 kb on - strand, within AO353_03820 at 817.866 kb on - strand, within AO353_03820 at 817.866 kb on - strand, within AO353_03820 at 817.904 kb on - strand, within AO353_03820 at 818.274 kb on - strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.333 kb on + strand at 818.334 kb on - strand at 818.334 kb on - strand at 818.334 kb on - strand at 818.334 kb on - strand at 818.511 kb on + strand, within AO353_03825 at 818.512 kb on - strand, within AO353_03825 at 818.532 kb on - strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.566 kb on + strand, within AO353_03825 at 818.567 kb on - strand, within AO353_03825 at 818.567 kb on - strand, within AO353_03825 at 818.611 kb on + strand at 818.611 kb on + strand at 818.612 kb on - strand at 818.612 kb on - strand at 818.636 kb on + strand at 818.636 kb on + strand at 818.636 kb on + strand at 818.637 kb on - strand at 818.735 kb on + strand, within AO353_03830 at 818.775 kb on + strand, within AO353_03830 at 818.776 kb on - strand, within AO353_03830 at 819.002 kb on + strand at 819.002 kb on + strand at 819.002 kb on + strand at 819.003 kb on - strand at 819.003 kb on - strand at 819.046 kb on + strand at 819.046 kb on + strand at 819.061 kb on - strand at 819.088 kb on + strand at 819.088 kb on + strand at 819.088 kb on + strand at 819.089 kb on - strand at 819.089 kb on - strand at 819.089 kb on - strand at 819.089 kb on - strand at 819.201 kb on + strand at 819.201 kb on + strand at 819.201 kb on + strand at 819.201 kb on + strand at 819.202 kb on - strand at 819.202 kb on - strand at 819.279 kb on - strand at 819.405 kb on + strand at 819.406 kb on - strand at 819.406 kb on - strand at 819.562 kb on + strand, within AO353_03835 at 819.562 kb on + strand, within AO353_03835 at 819.562 kb on + strand, within AO353_03835 at 819.562 kb on + strand, within AO353_03835 at 819.563 kb on - strand, within AO353_03835 at 819.563 kb on - strand, within AO353_03835 at 819.563 kb on - strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.577 kb on + strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.578 kb on - strand, within AO353_03835 at 819.636 kb on + strand, within AO353_03835 at 819.637 kb on - strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.745 kb on + strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.746 kb on - strand, within AO353_03835 at 819.895 kb on + strand, within AO353_03835 at 819.895 kb on + strand, within AO353_03835 at 819.895 kb on + strand, within AO353_03835 at 819.896 kb on - strand, within AO353_03835 at 819.896 kb on - strand, within AO353_03835 at 819.960 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand, within AO353_03835 at 819.964 kb on + strand at 819.964 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835 at 819.965 kb on - strand, within AO353_03835
Per-strain Table
Position Strand Gene LocusTag Fraction 1-ethyl-3-methylimidazolium acetate 30 mM remove 817,664 - -0.0 817,664 - +0.5 817,681 + -0.0 817,681 + -3.3 817,681 + +0.6 817,681 + +1.4 817,681 + +2.0 817,682 - -1.6 817,682 - -0.0 817,682 - -0.1 817,682 - -0.5 817,682 - -0.6 817,682 - -0.3 817,682 - -1.0 817,714 + +2.1 817,715 - +0.7 817,715 - -0.8 817,715 - +0.6 817,715 - -0.1 817,715 - +0.1 817,722 - +1.0 817,722 - -0.6 817,722 - +0.3 817,722 - -0.6 817,724 + -1.0 817,724 + -0.7 817,725 - -0.2 817,725 - +1.5 817,725 - -0.0 817,725 - +1.7 817,725 - -0.0 817,842 - AO353_03820 0.22 -0.9 817,842 - AO353_03820 0.22 +1.6 817,865 + AO353_03820 0.26 -0.1 817,865 + AO353_03820 0.26 +0.7 817,865 + AO353_03820 0.26 +0.6 817,866 - AO353_03820 0.26 +3.3 817,866 - AO353_03820 0.26 -0.1 817,866 - AO353_03820 0.26 -0.2 817,904 - AO353_03820 0.32 +3.3 818,274 - +1.2 818,333 + +1.1 818,333 + +0.1 818,333 + +1.0 818,333 + -0.2 818,333 + +0.4 818,333 + -1.3 818,333 + -0.6 818,333 + +0.1 818,333 + -0.6 818,333 + +1.3 818,333 + +0.3 818,333 + +0.4 818,334 - +0.1 818,334 - -1.8 818,334 - -1.7 818,334 - +1.0 818,511 + AO353_03825 0.63 -0.2 818,512 - AO353_03825 0.63 -0.3 818,532 - AO353_03825 0.71 -2.3 818,566 + AO353_03825 0.84 -0.3 818,566 + AO353_03825 0.84 +1.0 818,566 + AO353_03825 0.84 +1.0 818,566 + AO353_03825 0.84 -0.6 818,567 - AO353_03825 0.84 +1.3 818,567 - AO353_03825 0.84 -0.4 818,611 + -1.3 818,611 + +0.4 818,612 - -0.4 818,612 - +0.4 818,636 + -0.2 818,636 + +0.6 818,636 + -0.6 818,637 - +0.7 818,735 + AO353_03830 0.32 +1.3 818,775 + AO353_03830 0.43 -0.2 818,776 - AO353_03830 0.43 +0.3 819,002 + +0.3 819,002 + -0.0 819,002 + -0.6 819,003 - +1.0 819,003 - +0.7 819,046 + -0.3 819,046 + +0.1 819,061 - +0.5 819,088 + -2.0 819,088 + -1.3 819,088 + +0.6 819,089 - +0.3 819,089 - +0.6 819,089 - +1.6 819,089 - +1.0 819,201 + -0.0 819,201 + +0.4 819,201 + -1.3 819,201 + -0.0 819,202 - -1.3 819,202 - +2.8 819,279 - +0.1 819,405 + +1.1 819,406 - -0.8 819,406 - +0.7 819,562 + AO353_03835 0.26 +0.6 819,562 + AO353_03835 0.26 -0.2 819,562 + AO353_03835 0.26 +0.6 819,562 + AO353_03835 0.26 +0.6 819,563 - AO353_03835 0.26 +0.3 819,563 - AO353_03835 0.26 -0.3 819,563 - AO353_03835 0.26 +1.7 819,577 + AO353_03835 0.28 -0.0 819,577 + AO353_03835 0.28 -0.3 819,577 + AO353_03835 0.28 +0.2 819,577 + AO353_03835 0.28 +1.3 819,578 - AO353_03835 0.28 -1.2 819,578 - AO353_03835 0.28 +0.3 819,578 - AO353_03835 0.28 +2.8 819,578 - AO353_03835 0.28 +0.5 819,636 + AO353_03835 0.34 -0.0 819,637 - AO353_03835 0.34 -0.6 819,745 + AO353_03835 0.46 +0.9 819,745 + AO353_03835 0.46 +1.1 819,745 + AO353_03835 0.46 +0.6 819,745 + AO353_03835 0.46 +1.0 819,746 - AO353_03835 0.46 +0.5 819,746 - AO353_03835 0.46 -0.9 819,746 - AO353_03835 0.46 -0.0 819,746 - AO353_03835 0.46 +0.5 819,746 - AO353_03835 0.46 +0.1 819,746 - AO353_03835 0.46 +0.7 819,746 - AO353_03835 0.46 -1.6 819,746 - AO353_03835 0.46 +0.8 819,895 + AO353_03835 0.62 -1.8 819,895 + AO353_03835 0.62 +0.3 819,895 + AO353_03835 0.62 +1.7 819,896 - AO353_03835 0.62 -0.6 819,896 - AO353_03835 0.62 -2.0 819,960 + AO353_03835 0.69 +1.0 819,964 + AO353_03835 0.69 +0.8 819,964 + AO353_03835 0.69 -1.0 819,964 + AO353_03835 0.69 -0.9 819,964 + AO353_03835 0.69 -1.0 819,964 + AO353_03835 0.69 -0.4 819,964 + AO353_03835 0.69 +0.3 819,964 + +1.0 819,964 - AO353_03835 0.69 +1.4 819,965 - AO353_03835 0.69 -0.3 819,965 - AO353_03835 0.69 -0.3 819,965 - AO353_03835 0.69 +0.1 819,965 - AO353_03835 0.69 +1.1 819,965 - AO353_03835 0.69 +1.0
Or see this region's nucleotide sequence